EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000004070 (Gene tree)
Gene ID: 100512874
Gene Symbol: SCAF8
Alias: KIAA1116|RBM16
Full Name: SR-related CTD associated factor 8
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 216686 bases
Position: chr1:11929991-12146676
Accession: 100512874
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000053605	RRM_1	PF00076.22	2.2e-09	1	1
ENSSSCP00000035059	RRM_1	PF00076.22	2.6e-09	1	1
ENSSSCP00000040966	RRM_1	PF00076.22	2.6e-09	1	1
ENSSSCP00000041034	RRM_1	PF00076.22	2.6e-09	1	1
ENSSSCP00000004397	RRM_1	PF00076.22	2.6e-09	1	1
ENSSSCP00000059093	RRM_1	PF00076.22	2.6e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000056077	SCAF8-204	4946	XM_021072016	ENSSSCP00000059093	1269 (aa)	XP_020927675	A0A287BRN4
ENSSSCT00000065131	SCAF8-206	4172	-	ENSSSCP00000035059	1244 (aa)	-	A0A286ZTS4
ENSSSCT00000048023	SCAF8-205	4563	XM_013984702	ENSSSCP00000041034	1265 (aa)	XP_013840156	A0A287AAW2
ENSSSCT00000062929	SCAF8-201	4513	-	ENSSSCP00000040966	1265 (aa)	-	A0A287AAW2
ENSSSCT00000057187	SCAF8-203	3875	-	ENSSSCP00000053605	1062 (aa)	-	A0A287BAS4
ENSSSCT00000004499	SCAF8-202	5411	XM_021072020	ENSSSCP00000004397	1268 (aa)	XP_020927679	F1SB23

Gene Model

Click here to download ENSSSCG00000004070's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000004070's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000004070	SCAF8	100	96.145	ENSG00000213079	SCAF8	100	96.145	Homo_sapiens
ENSSSCG00000004070	SCAF8	88	68.230	ENSAPOG00000015527	SCAF8	77	67.561	Acanthochromis_polyacanthus
ENSSSCG00000004070	SCAF8	100	96.524	ENSAMEG00000007583	SCAF8	97	94.888	Ailuropoda_melanoleuca
ENSSSCG00000004070	SCAF8	88	68.230	ENSAOCG00000002421	SCAF8	76	67.561	Amphiprion_ocellaris
ENSSSCG00000004070	SCAF8	91	65.805	ENSATEG00000006959	SCAF8	97	64.871	Anabas_testudineus
ENSSSCG00000004070	SCAF8	100	79.173	ENSAPLG00000005765	SCAF8	100	79.034	Anas_platyrhynchos
ENSSSCG00000004070	SCAF8	100	74.443	ENSACAG00000005282	SCAF8	99	74.587	Anolis_carolinensis
ENSSSCG00000004070	SCAF8	100	95.987	ENSANAG00000036184	SCAF8	100	95.987	Aotus_nancymaae
ENSSSCG00000004070	SCAF8	88	68.113	ENSACLG00000018828	SCAF8	80	67.328	Astatotilapia_calliptera
ENSSSCG00000004070	SCAF8	100	96.457	ENSBTAG00000031917	SCAF8	100	96.457	Bos_taurus
ENSSSCG00000004070	SCAF8	100	95.830	ENSCJAG00000012631	SCAF8	97	94.272	Callithrix_jacchus
ENSSSCG00000004070	SCAF8	100	96.527	ENSCAFG00000000570	SCAF8	100	96.527	Canis_familiaris
ENSSSCG00000004070	SCAF8	100	96.469	ENSCAFG00020015048	SCAF8	99	96.367	Canis_lupus_dingo
ENSSSCG00000004070	SCAF8	100	96.220	ENSCHIG00000025041	SCAF8	100	95.906	Capra_hircus
ENSSSCG00000004070	SCAF8	100	95.264	ENSTSYG00000010991	SCAF8	97	95.264	Carlito_syrichta
ENSSSCG00000004070	SCAF8	66	97.845	ENSCAPG00000003300	SCAF8	84	97.807	Cavia_aperea
ENSSSCG00000004070	SCAF8	100	86.640	ENSCPOG00000022216	-	99	85.782	Cavia_porcellus
ENSSSCG00000004070	SCAF8	100	95.830	ENSCCAG00000024952	SCAF8	100	95.830	Cebus_capucinus
ENSSSCG00000004070	SCAF8	100	95.909	ENSCATG00000035361	SCAF8	100	95.909	Cercocebus_atys
ENSSSCG00000004070	SCAF8	100	94.462	ENSCLAG00000004910	SCAF8	100	94.528	Chinchilla_lanigera
ENSSSCG00000004070	SCAF8	100	96.054	ENSCSAG00000013430	SCAF8	100	94.505	Chlorocebus_sabaeus
ENSSSCG00000004070	SCAF8	97	89.730	ENSCPBG00000016330	SCAF8	100	76.324	Chrysemys_picta_bellii
ENSSSCG00000004070	SCAF8	100	95.751	ENSCANG00000039499	SCAF8	99	95.718	Colobus_angolensis_palliatus
ENSSSCG00000004070	SCAF8	100	91.267	ENSCGRG00001020167	Scaf8	100	91.267	Cricetulus_griseus_chok1gshd
ENSSSCG00000004070	SCAF8	100	91.091	ENSCGRG00000004120	Scaf8	99	91.197	Cricetulus_griseus_crigri
ENSSSCG00000004070	SCAF8	91	64.172	ENSCSEG00000000043	-	78	66.589	Cynoglossus_semilaevis
ENSSSCG00000004070	SCAF8	87	64.000	ENSCVAG00000000925	SCAF8	77	63.196	Cyprinodon_variegatus
ENSSSCG00000004070	SCAF8	98	89.500	ENSDNOG00000025271	SCAF8	100	93.109	Dasypus_novemcinctus
ENSSSCG00000004070	SCAF8	100	92.474	ENSDORG00000006391	Scaf8	100	92.429	Dipodomys_ordii
ENSSSCG00000004070	SCAF8	100	97.156	ENSEASG00005018879	SCAF8	100	97.089	Equus_asinus_asinus
ENSSSCG00000004070	SCAF8	100	97.244	ENSECAG00000005540	SCAF8	100	97.244	Equus_caballus
ENSSSCG00000004070	SCAF8	88	65.581	ENSELUG00000002779	SCAF8	75	64.855	Esox_lucius
ENSSSCG00000004070	SCAF8	100	96.614	ENSFCAG00000023424	SCAF8	100	96.614	Felis_catus
ENSSSCG00000004070	SCAF8	100	79.349	ENSFALG00000012433	SCAF8	100	79.455	Ficedula_albicollis
ENSSSCG00000004070	SCAF8	100	94.226	ENSFDAG00000010335	SCAF8	99	94.295	Fukomys_damarensis
ENSSSCG00000004070	SCAF8	91	69.174	ENSFHEG00000008284	SCAF8	77	68.681	Fundulus_heteroclitus
ENSSSCG00000004070	SCAF8	60	68.766	ENSGMOG00000018812	SCAF8	66	70.735	Gadus_morhua
ENSSSCG00000004070	SCAF8	100	80.238	ENSGALG00000013635	SCAF8	99	79.517	Gallus_gallus
ENSSSCG00000004070	SCAF8	86	68.842	ENSGAFG00000018033	SCAF8	78	65.479	Gambusia_affinis
ENSSSCG00000004070	SCAF8	93	54.218	ENSGACG00000006909	SCAF8	100	54.258	Gasterosteus_aculeatus
ENSSSCG00000004070	SCAF8	64	73.030	ENSGAGG00000017820	-	88	72.783	Gopherus_agassizii
ENSSSCG00000004070	SCAF8	100	96.066	ENSGGOG00000008645	SCAF8	100	96.066	Gorilla_gorilla
ENSSSCG00000004070	SCAF8	88	67.995	ENSHBUG00000019537	SCAF8	80	67.211	Haplochromis_burtoni
ENSSSCG00000004070	SCAF8	100	94.261	ENSHGLG00000003619	SCAF8	100	94.261	Heterocephalus_glaber_female
ENSSSCG00000004070	SCAF8	100	94.146	ENSHGLG00100004708	SCAF8	100	94.216	Heterocephalus_glaber_male
ENSSSCG00000004070	SCAF8	100	95.268	ENSSTOG00000026043	SCAF8	100	95.268	Ictidomys_tridecemlineatus
ENSSSCG00000004070	SCAF8	100	92.697	ENSJJAG00000020480	Scaf8	100	92.290	Jaculus_jaculus
ENSSSCG00000004070	SCAF8	88	67.647	ENSKMAG00000012767	SCAF8	78	67.176	Kryptolebias_marmoratus
ENSSSCG00000004070	SCAF8	64	77.037	ENSLBEG00000012484	-	59	77.143	Labrus_bergylta
ENSSSCG00000004070	SCAF8	90	75.000	ENSLACG00000001394	SCAF8	99	73.095	Latimeria_chalumnae
ENSSSCG00000004070	SCAF8	100	61.581	ENSLOCG00000016856	SCAF8	100	60.703	Lepisosteus_oculatus
ENSSSCG00000004070	SCAF8	100	93.323	ENSLAFG00000000022	SCAF8	100	93.873	Loxodonta_africana
ENSSSCG00000004070	SCAF8	100	96.066	ENSMFAG00000032738	SCAF8	100	96.066	Macaca_fascicularis
ENSSSCG00000004070	SCAF8	100	96.066	ENSMMUG00000015163	SCAF8	100	96.066	Macaca_mulatta
ENSSSCG00000004070	SCAF8	100	96.066	ENSMNEG00000043466	SCAF8	100	96.066	Macaca_nemestrina
ENSSSCG00000004070	SCAF8	100	95.896	ENSMLEG00000034845	SCAF8	99	95.896	Mandrillus_leucophaeus
ENSSSCG00000004070	SCAF8	86	65.050	ENSMAMG00000009457	SCAF8	76	63.861	Mastacembelus_armatus
ENSSSCG00000004070	SCAF8	88	67.995	ENSMZEG00005005698	SCAF8	80	67.211	Maylandia_zebra
ENSSSCG00000004070	SCAF8	100	79.905	ENSMGAG00000012762	SCAF8	100	79.705	Meleagris_gallopavo
ENSSSCG00000004070	SCAF8	100	90.449	ENSMAUG00000009513	Scaf8	100	90.563	Mesocricetus_auratus
ENSSSCG00000004070	SCAF8	100	95.204	ENSMICG00000028965	SCAF8	100	95.047	Microcebus_murinus
ENSSSCG00000004070	SCAF8	100	92.132	ENSMOCG00000014950	Scaf8	100	92.132	Microtus_ochrogaster
ENSSSCG00000004070	SCAF8	84	66.108	ENSMMOG00000002216	SCAF8	78	64.213	Mola_mola
ENSSSCG00000004070	SCAF8	100	86.987	ENSMODG00000008301	SCAF8	100	86.987	Monodelphis_domestica
ENSSSCG00000004070	SCAF8	88	67.409	ENSMALG00000011584	SCAF8	78	66.979	Monopterus_albus
ENSSSCG00000004070	SCAF8	100	90.709	MGP_CAROLIEiJ_G0021016	Scaf8	100	90.709	Mus_caroli
ENSSSCG00000004070	SCAF8	100	90.866	ENSMUSG00000046201	Scaf8	100	90.866	Mus_musculus
ENSSSCG00000004070	SCAF8	100	91.339	MGP_PahariEiJ_G0023334	Scaf8	100	91.339	Mus_pahari
ENSSSCG00000004070	SCAF8	100	95.893	ENSMPUG00000001974	SCAF8	100	94.419	Mustela_putorius_furo
ENSSSCG00000004070	SCAF8	100	94.538	ENSMLUG00000029190	SCAF8	100	94.173	Myotis_lucifugus
ENSSSCG00000004070	SCAF8	100	92.211	ENSNGAG00000012332	Scaf8	100	92.211	Nannospalax_galili
ENSSSCG00000004070	SCAF8	100	53.082	ENSNBRG00000009067	SCAF8	100	52.941	Neolamprologus_brichardi
ENSSSCG00000004070	SCAF8	100	94.662	ENSNLEG00000015509	SCAF8	99	94.620	Nomascus_leucogenys
ENSSSCG00000004070	SCAF8	68	100.000	ENSOPRG00000018413	-	76	92.929	Ochotona_princeps
ENSSSCG00000004070	SCAF8	100	94.108	ENSODEG00000007296	SCAF8	100	94.108	Octodon_degus
ENSSSCG00000004070	SCAF8	100	55.393	ENSONIG00000008119	SCAF8	99	55.031	Oreochromis_niloticus
ENSSSCG00000004070	SCAF8	100	95.426	ENSOCUG00000026063	SCAF8	100	95.426	Oryctolagus_cuniculus
ENSSSCG00000004070	SCAF8	88	67.175	ENSORLG00000017358	SCAF8	78	66.861	Oryzias_latipes
ENSSSCG00000004070	SCAF8	88	67.292	ENSORLG00020002214	SCAF8	78	66.978	Oryzias_latipes_hni
ENSSSCG00000004070	SCAF8	88	67.409	ENSORLG00015015779	SCAF8	78	67.095	Oryzias_latipes_hsok
ENSSSCG00000004070	SCAF8	88	67.409	ENSOMEG00000015471	SCAF8	77	67.292	Oryzias_melastigma
ENSSSCG00000004070	SCAF8	100	95.107	ENSOGAG00000034223	SCAF8	97	93.576	Otolemur_garnettii
ENSSSCG00000004070	SCAF8	100	96.064	ENSOARG00000004159	SCAF8	100	95.718	Ovis_aries
ENSSSCG00000004070	SCAF8	100	96.145	ENSPPAG00000039826	SCAF8	100	96.145	Pan_paniscus
ENSSSCG00000004070	SCAF8	100	96.693	ENSPPRG00000023175	SCAF8	100	96.693	Panthera_pardus
ENSSSCG00000004070	SCAF8	100	96.627	ENSPTIG00000014836	SCAF8	100	96.593	Panthera_tigris_altaica
ENSSSCG00000004070	SCAF8	100	95.987	ENSPTRG00000018727	SCAF8	100	95.987	Pan_troglodytes
ENSSSCG00000004070	SCAF8	100	95.909	ENSPANG00000017489	SCAF8	100	94.238	Papio_anubis
ENSSSCG00000004070	SCAF8	100	56.757	ENSPKIG00000021212	SCAF8	100	71.220	Paramormyrops_kingsleyae
ENSSSCG00000004070	SCAF8	98	88.971	ENSPSIG00000008614	SCAF8	85	88.971	Pelodiscus_sinensis
ENSSSCG00000004070	SCAF8	100	91.573	ENSPEMG00000010531	Scaf8	100	91.673	Peromyscus_maniculatus_bairdii
ENSSSCG00000004070	SCAF8	100	87.421	ENSPCIG00000001141	SCAF8	100	87.421	Phascolarctos_cinereus
ENSSSCG00000004070	SCAF8	91	73.415	ENSPFOG00000004176	SCAF8	100	55.403	Poecilia_formosa
ENSSSCG00000004070	SCAF8	86	69.420	ENSPLAG00000021432	SCAF8	77	66.510	Poecilia_latipinna
ENSSSCG00000004070	SCAF8	86	69.667	ENSPMEG00000007591	SCAF8	84	68.516	Poecilia_mexicana
ENSSSCG00000004070	SCAF8	86	69.297	ENSPREG00000000652	SCAF8	77	66.392	Poecilia_reticulata
ENSSSCG00000004070	SCAF8	100	94.501	ENSPPYG00000017121	SCAF8	100	94.187	Pongo_abelii
ENSSSCG00000004070	SCAF8	85	97.822	ENSPCAG00000013044	SCAF8	90	97.822	Procavia_capensis
ENSSSCG00000004070	SCAF8	100	95.519	ENSPCOG00000002067	SCAF8	99	95.325	Propithecus_coquereli
ENSSSCG00000004070	SCAF8	99	92.566	ENSPVAG00000005582	SCAF8	99	93.629	Pteropus_vampyrus
ENSSSCG00000004070	SCAF8	88	68.113	ENSPNYG00000007277	SCAF8	80	67.328	Pundamilia_nyererei
ENSSSCG00000004070	SCAF8	88	68.505	ENSPNAG00000024740	SCAF8	82	68.750	Pygocentrus_nattereri
ENSSSCG00000004070	SCAF8	100	90.945	ENSRNOG00000016919	Scaf8	100	90.945	Rattus_norvegicus
ENSSSCG00000004070	SCAF8	100	95.830	ENSRBIG00000035769	SCAF8	100	95.830	Rhinopithecus_bieti
ENSSSCG00000004070	SCAF8	100	95.751	ENSRROG00000013580	SCAF8	100	95.751	Rhinopithecus_roxellana
ENSSSCG00000004070	SCAF8	100	95.751	ENSSBOG00000027023	SCAF8	100	95.751	Saimiri_boliviensis_boliviensis
ENSSSCG00000004070	SCAF8	100	86.724	ENSSHAG00000009915	SCAF8	100	86.724	Sarcophilus_harrisii
ENSSSCG00000004070	SCAF8	100	54.678	ENSSFOG00015009481	SCAF8	93	70.526	Scleropages_formosus
ENSSSCG00000004070	SCAF8	88	67.564	ENSSMAG00000008275	SCAF8	77	66.667	Scophthalmus_maximus
ENSSSCG00000004070	SCAF8	100	77.929	ENSSPUG00000015219	SCAF8	100	78.172	Sphenodon_punctatus
ENSSSCG00000004070	SCAF8	100	80.255	ENSTGUG00000011151	SCAF8	100	80.660	Taeniopygia_guttata
ENSSSCG00000004070	SCAF8	86	68.272	ENSTRUG00000009243	SCAF8	78	68.025	Takifugu_rubripes
ENSSSCG00000004070	SCAF8	82	69.883	ENSTNIG00000016885	SCAF8	95	69.883	Tetraodon_nigroviridis
ENSSSCG00000004070	SCAF8	100	96.948	ENSTTRG00000014538	SCAF8	100	96.984	Tursiops_truncatus
ENSSSCG00000004070	SCAF8	100	96.142	ENSUAMG00000024736	SCAF8	99	96.111	Ursus_americanus
ENSSSCG00000004070	SCAF8	100	96.145	ENSUMAG00000013404	SCAF8	100	96.145	Ursus_maritimus
ENSSSCG00000004070	SCAF8	68	88.023	ENSVPAG00000012465	SCAF8	99	88.256	Vicugna_pacos
ENSSSCG00000004070	SCAF8	100	96.603	ENSVVUG00000007532	SCAF8	100	96.603	Vulpes_vulpes
ENSSSCG00000004070	SCAF8	100	78.198	ENSXETG00000013132	scaf8	100	62.072	Xenopus_tropicalis
ENSSSCG00000004070	SCAF8	86	69.420	ENSXMAG00000019192	SCAF8	78	68.804	Xiphophorus_maculatus