EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000004287 (Gene tree)
Gene ID: 100155174
Gene Symbol: -
Alias: -
Full Name: DEAD-box helicase 43
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 17761 bases
Position: chr1:53021222-53038982
Accession: 100155174
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000004630	KH_1	PF00013.29	1.2e-10	1	1
ENSSSCP00000004631	KH_1	PF00013.29	1.3e-10	1	1
ENSSSCP00000004630	DEAD	PF00270.29	3.2e-41	1	1
ENSSSCP00000004631	DEAD	PF00270.29	3.5e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000004739	-	1821	-	ENSSSCP00000004630	606 (aa)	-	F1S0I7
ENSSSCT00000004740	-	1932	XM_001925409	ENSSSCP00000004631	643 (aa)	XP_001925444	F1S0I6

Gene Model

Click here to download ENSSSCG00000004287's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000004287's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000004287	-	63	39.747	ENSSSCG00000016913	DDX4	53	40.103
ENSSSCG00000004287	-	63	35.623	ENSSSCG00000025329	DDX49	77	36.096
ENSSSCG00000004287	-	62	30.575	ENSSSCG00000005729	DDX31	53	30.575
ENSSSCG00000004287	-	68	44.369	ENSSSCG00000000104	DDX17	87	43.968
ENSSSCG00000004287	-	60	32.507	ENSSSCG00000011803	EIF4A2	88	32.507
ENSSSCG00000004287	-	62	35.751	ENSSSCG00000033149	DDX47	81	35.695
ENSSSCG00000004287	-	67	40.940	ENSSSCG00000000176	DDX23	57	39.623
ENSSSCG00000004287	-	67	35.714	ENSSSCG00000032642	DDX41	66	35.714
ENSSSCG00000004287	-	69	31.929	ENSSSCG00000024444	DDX59	66	34.772
ENSSSCG00000004287	-	62	32.275	ENSSSCG00000015097	DDX6	77	32.275
ENSSSCG00000004287	-	64	36.203	ENSSSCG00000022915	DDX27	53	36.579
ENSSSCG00000004287	-	96	68.730	ENSSSCG00000012169	-	93	71.695
ENSSSCG00000004287	-	60	30.227	ENSSSCG00000026038	DDX28	73	30.227
ENSSSCG00000004287	-	57	30.055	ENSSSCG00000002722	-	73	30.055
ENSSSCG00000004287	-	68	43.792	ENSSSCG00000032092	DDX5	72	47.554
ENSSSCG00000004287	-	60	40.415	ENSSSCG00000012252	DDX3X	58	40.415
ENSSSCG00000004287	-	68	36.607	ENSSSCG00000017289	DDX42	53	36.977
ENSSSCG00000004287	-	56	30.278	ENSSSCG00000009771	DDX55	64	30.556
ENSSSCG00000004287	-	65	39.320	ENSSSCG00000026430	DDX3Y	72	39.320
ENSSSCG00000004287	-	55	34.615	ENSSSCG00000017957	EIF4A1	86	34.615
ENSSSCG00000004287	-	58	32.386	ENSSSCG00000017155	EIF4A3	85	32.386
ENSSSCG00000004287	-	66	32.850	ENSSSCG00000021275	DDX52	83	30.845

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000004287	-	99	79.385	ENSAMEG00000007851	-	100	79.385	Ailuropoda_melanoleuca
ENSSSCG00000004287	-	100	85.226	ENSBTAG00000021814	-	100	85.226	Bos_taurus
ENSSSCG00000004287	-	99	76.733	ENSCAFG00020002717	-	99	76.568	Canis_lupus_dingo
ENSSSCG00000004287	-	99	78.671	ENSCAFG00020010029	-	100	78.516	Canis_lupus_dingo
ENSSSCG00000004287	-	100	85.070	ENSCHIG00000017351	-	100	85.070	Capra_hircus
ENSSSCG00000004287	-	77	75.480	ENSCAPG00000004247	-	99	75.480	Cavia_aperea
ENSSSCG00000004287	-	99	76.805	ENSCPOG00000003991	-	100	76.805	Cavia_porcellus
ENSSSCG00000004287	-	99	71.008	ENSCLAG00000010261	-	100	71.008	Chinchilla_lanigera
ENSSSCG00000004287	-	64	79.464	ENSCHOG00000003450	-	69	79.464	Choloepus_hoffmanni
ENSSSCG00000004287	-	99	77.898	ENSCGRG00001001145	Ddx43	100	77.280	Cricetulus_griseus_chok1gshd
ENSSSCG00000004287	-	87	81.883	ENSCGRG00000010217	Ddx43	100	81.883	Cricetulus_griseus_crigri
ENSSSCG00000004287	-	100	78.341	ENSDNOG00000017589	-	100	78.341	Dasypus_novemcinctus
ENSSSCG00000004287	-	99	78.053	ENSDORG00000030010	Ddx43	100	78.053	Dipodomys_ordii
ENSSSCG00000004287	-	83	87.798	ENSETEG00000001887	-	81	87.798	Echinops_telfairi
ENSSSCG00000004287	-	99	80.864	ENSEASG00005004346	-	89	80.093	Equus_asinus_asinus
ENSSSCG00000004287	-	99	80.710	ENSECAG00000017971	DDX43	98	80.093	Equus_caballus
ENSSSCG00000004287	-	100	76.698	ENSFCAG00000031631	-	100	75.926	Felis_catus
ENSSSCG00000004287	-	87	77.975	ENSHGLG00000001118	-	100	77.975	Heterocephalus_glaber_female
ENSSSCG00000004287	-	96	74.560	ENSHGLG00100011895	-	99	73.742	Heterocephalus_glaber_male
ENSSSCG00000004287	-	87	72.500	ENSSTOG00000032538	-	100	72.500	Ictidomys_tridecemlineatus
ENSSSCG00000004287	-	99	77.280	ENSJJAG00000014184	Ddx43	100	77.280	Jaculus_jaculus
ENSSSCG00000004287	-	93	81.561	ENSLAFG00000012755	-	97	82.453	Loxodonta_africana
ENSSSCG00000004287	-	99	78.053	ENSMAUG00000001441	Ddx43	100	77.434	Mesocricetus_auratus
ENSSSCG00000004287	-	99	77.006	ENSMOCG00000012956	Ddx43	100	76.235	Microtus_ochrogaster
ENSSSCG00000004287	-	99	77.898	MGP_CAROLIEiJ_G0032467	Ddx43	100	77.280	Mus_caroli
ENSSSCG00000004287	-	99	78.207	ENSMUSG00000070291	Ddx43	100	77.589	Mus_musculus
ENSSSCG00000004287	-	99	71.318	MGP_PahariEiJ_G0015333	Ddx43	86	83.730	Mus_pahari
ENSSSCG00000004287	-	99	78.207	MGP_SPRETEiJ_G0033607	Ddx43	100	77.589	Mus_spretus
ENSSSCG00000004287	-	100	79.969	ENSMPUG00000004342	-	100	79.815	Mustela_putorius_furo
ENSSSCG00000004287	-	99	80.338	ENSMLUG00000017604	-	100	80.338	Myotis_lucifugus
ENSSSCG00000004287	-	99	77.434	ENSNGAG00000015102	Ddx43	100	77.125	Nannospalax_galili
ENSSSCG00000004287	-	74	84.821	ENSOPRG00000013523	-	86	84.821	Ochotona_princeps
ENSSSCG00000004287	-	84	77.716	ENSODEG00000016207	-	99	77.716	Octodon_degus
ENSSSCG00000004287	-	99	72.952	ENSOCUG00000006338	-	100	72.952	Oryctolagus_cuniculus
ENSSSCG00000004287	-	98	65.604	ENSOCUG00000025811	-	96	65.247	Oryctolagus_cuniculus
ENSSSCG00000004287	-	100	84.603	ENSOARG00000010873	-	100	84.603	Ovis_aries
ENSSSCG00000004287	-	100	77.006	ENSPTIG00000017842	-	100	76.235	Panthera_tigris_altaica
ENSSSCG00000004287	-	87	82.593	ENSPEMG00000023986	Ddx43	100	82.593	Peromyscus_maniculatus_bairdii
ENSSSCG00000004287	-	99	76.316	ENSPCAG00000005962	-	99	76.507	Procavia_capensis
ENSSSCG00000004287	-	87	84.956	ENSPVAG00000012718	-	100	84.956	Pteropus_vampyrus
ENSSSCG00000004287	-	99	78.516	ENSRNOG00000050868	Ddx43	100	77.898	Rattus_norvegicus
ENSSSCG00000004287	-	84	83.394	ENSSARG00000013493	-	100	83.394	Sorex_araneus
ENSSSCG00000004287	-	87	81.216	ENSTTRG00000001488	-	99	81.216	Tursiops_truncatus
ENSSSCG00000004287	-	83	75.551	ENSUAMG00000012894	-	83	75.551	Ursus_americanus
ENSSSCG00000004287	-	100	79.661	ENSUMAG00000012291	-	100	79.661	Ursus_maritimus
ENSSSCG00000004287	-	94	81.322	ENSVPAG00000004969	-	100	81.322	Vicugna_pacos
ENSSSCG00000004287	-	99	78.671	ENSVVUG00000013908	-	100	78.516	Vulpes_vulpes