EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000004516 (Gene tree)
Gene ID: 100523937
Gene Symbol: MBD1
Alias: CXXC3|PCM1
Full Name: methyl-CpG binding domain protein 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 67225 bases
Position: chr1:99850564-99917788
Accession: 100156150
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000032035	MBD	PF01429.19	3.8e-16	1	1
ENSSSCP00000043813	MBD	PF01429.19	3.9e-16	1	1
ENSSSCP00000004871	MBD	PF01429.19	4.4e-16	1	1
ENSSSCP00000036854	MBD	PF01429.19	4.4e-16	1	1
ENSSSCP00000041254	MBD	PF01429.19	4.4e-16	1	1
ENSSSCP00000058248	MBD	PF01429.19	4.6e-16	1	1
ENSSSCP00000049738	MBD	PF01429.19	4.8e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000004987	MBD1-202	1545	XM_005654423	ENSSSCP00000004870	514 (aa)	XP_005654480	F1RPP5
ENSSSCT00000053129	MBD1-203	2469	XM_021093109	ENSSSCP00000058248	607 (aa)	XP_020948768	A0A287BQ63
ENSSSCT00000004988	MBD1-208	2912	XM_021093098	ENSSSCP00000004871	582 (aa)	XP_020948757	F1RPP4
ENSSSCT00000037626	MBD1-207	2277	-	ENSSSCP00000043813	543 (aa)	-	A0A287AIG7
ENSSSCT00000041102	MBD1-206	6270	XM_005654407	ENSSSCP00000041254	590 (aa)	XP_005654464	A0A287ABI3
ENSSSCT00000052502	MBD1-205	6213	XM_005654422	ENSSSCP00000032035	535 (aa)	XP_005654479	A0A286ZKQ9
ENSSSCT00000052786	MBD1-201	5879	XM_021093113	ENSSSCP00000036854	592 (aa)	XP_020948772	A0A286ZZD2
ENSSSCT00000040933	MBD1-204	4960	XM_005654404	ENSSSCP00000049738	618 (aa)	XP_005654461	A0A287B0J1

Gene Model

Click here to download ENSSSCG00000004516's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000004516's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000004516	MBD1	100	88.619	ENSG00000141644	MBD1	99	92.667	Homo_sapiens
ENSSSCG00000004516	MBD1	100	85.127	ENSAMEG00000000238	MBD1	95	87.981	Ailuropoda_melanoleuca
ENSSSCG00000004516	MBD1	67	43.317	ENSACAG00000006091	-	81	73.585	Anolis_carolinensis
ENSSSCG00000004516	MBD1	98	87.954	ENSANAG00000036253	MBD1	100	82.962	Aotus_nancymaae
ENSSSCG00000004516	MBD1	100	88.614	ENSBTAG00000003801	MBD1	100	88.944	Bos_taurus
ENSSSCG00000004516	MBD1	98	87.954	ENSCJAG00000004959	MBD1	99	81.546	Callithrix_jacchus
ENSSSCG00000004516	MBD1	100	83.677	ENSCAFG00000018928	MBD1	95	86.838	Canis_familiaris
ENSSSCG00000004516	MBD1	100	86.916	ENSCAFG00020024272	MBD1	100	87.695	Canis_lupus_dingo
ENSSSCG00000004516	MBD1	100	88.284	ENSCHIG00000021134	MBD1	100	88.284	Capra_hircus
ENSSSCG00000004516	MBD1	98	86.233	ENSTSYG00000000509	MBD1	99	83.601	Carlito_syrichta
ENSSSCG00000004516	MBD1	100	65.772	ENSCAPG00000015782	MBD1	100	70.000	Cavia_aperea
ENSSSCG00000004516	MBD1	100	67.559	ENSCPOG00000001671	MBD1	100	69.626	Cavia_porcellus
ENSSSCG00000004516	MBD1	100	84.441	ENSCCAG00000034600	MBD1	96	83.048	Cebus_capucinus
ENSSSCG00000004516	MBD1	98	88.528	ENSCATG00000029959	MBD1	100	86.446	Cercocebus_atys
ENSSSCG00000004516	MBD1	97	81.511	ENSCLAG00000007457	MBD1	87	81.350	Chinchilla_lanigera
ENSSSCG00000004516	MBD1	100	86.446	ENSCSAG00000018070	MBD1	100	86.446	Chlorocebus_sabaeus
ENSSSCG00000004516	MBD1	98	88.528	ENSCANG00000033425	MBD1	100	86.446	Colobus_angolensis_palliatus
ENSSSCG00000004516	MBD1	100	72.934	ENSCGRG00001014843	Mbd1	100	72.771	Cricetulus_griseus_chok1gshd
ENSSSCG00000004516	MBD1	100	58.805	ENSCGRG00000014135	Mbd1	86	80.172	Cricetulus_griseus_crigri
ENSSSCG00000004516	MBD1	100	82.876	ENSDNOG00000015998	MBD1	100	84.168	Dasypus_novemcinctus
ENSSSCG00000004516	MBD1	100	70.995	ENSDORG00000013917	Mbd1	97	78.659	Dipodomys_ordii
ENSSSCG00000004516	MBD1	100	86.003	ENSEASG00005003857	MBD1	100	87.558	Equus_asinus_asinus
ENSSSCG00000004516	MBD1	100	87.479	ENSECAG00000011497	MBD1	81	87.403	Equus_caballus
ENSSSCG00000004516	MBD1	100	90.149	ENSFCAG00000015730	MBD1	100	90.706	Felis_catus
ENSSSCG00000004516	MBD1	86	83.013	ENSFDAG00000011085	MBD1	96	77.177	Fukomys_damarensis
ENSSSCG00000004516	MBD1	50	50.769	ENSGAFG00000008975	mbd1b	50	31.235	Gambusia_affinis
ENSSSCG00000004516	MBD1	71	32.474	ENSGACG00000012106	-	58	33.243	Gasterosteus_aculeatus
ENSSSCG00000004516	MBD1	98	88.145	ENSGGOG00000016966	MBD1	100	86.116	Gorilla_gorilla
ENSSSCG00000004516	MBD1	100	81.983	ENSHGLG00000008740	MBD1	100	81.983	Heterocephalus_glaber_female
ENSSSCG00000004516	MBD1	86	88.535	ENSHGLG00100005198	MBD1	98	88.746	Heterocephalus_glaber_male
ENSSSCG00000004516	MBD1	55	30.303	ENSIPUG00000015243	-	50	55.385	Ictalurus_punctatus
ENSSSCG00000004516	MBD1	100	79.024	ENSSTOG00000007780	MBD1	100	79.187	Ictidomys_tridecemlineatus
ENSSSCG00000004516	MBD1	100	72.101	ENSJJAG00000022859	Mbd1	100	71.429	Jaculus_jaculus
ENSSSCG00000004516	MBD1	64	31.034	ENSKMAG00000020760	mbd1b	51	30.485	Kryptolebias_marmoratus
ENSSSCG00000004516	MBD1	96	36.994	ENSLACG00000002414	-	58	42.819	Latimeria_chalumnae
ENSSSCG00000004516	MBD1	100	74.759	ENSLAFG00000031328	MBD1	100	75.241	Loxodonta_africana
ENSSSCG00000004516	MBD1	100	88.993	ENSMFAG00000026335	MBD1	100	88.993	Macaca_fascicularis
ENSSSCG00000004516	MBD1	98	86.015	ENSMMUG00000009050	MBD1	99	85.370	Macaca_mulatta
ENSSSCG00000004516	MBD1	100	88.993	ENSMNEG00000038822	MBD1	100	88.993	Macaca_nemestrina
ENSSSCG00000004516	MBD1	98	88.528	ENSMLEG00000043121	MBD1	100	86.446	Mandrillus_leucophaeus
ENSSSCG00000004516	MBD1	72	34.872	ENSMAMG00000023341	-	50	66.102	Mastacembelus_armatus
ENSSSCG00000004516	MBD1	50	82.222	ENSMAUG00000021798	-	95	83.270	Mesocricetus_auratus
ENSSSCG00000004516	MBD1	98	86.667	ENSMICG00000006414	MBD1	100	86.607	Microcebus_murinus
ENSSSCG00000004516	MBD1	56	42.903	ENSMODG00000024864	-	100	51.481	Monodelphis_domestica
ENSSSCG00000004516	MBD1	68	44.533	ENSMODG00000001286	-	57	45.288	Monodelphis_domestica
ENSSSCG00000004516	MBD1	100	64.760	ENSMUSG00000024561	Mbd1	100	64.606	Mus_musculus
ENSSSCG00000004516	MBD1	100	64.809	MGP_PahariEiJ_G0019128	Mbd1	100	64.968	Mus_pahari
ENSSSCG00000004516	MBD1	98	66.396	MGP_SPRETEiJ_G0023304	Mbd1	99	66.234	Mus_spretus
ENSSSCG00000004516	MBD1	100	84.019	ENSMPUG00000008843	MBD1	95	85.897	Mustela_putorius_furo
ENSSSCG00000004516	MBD1	100	82.222	ENSMLUG00000008286	MBD1	95	84.727	Myotis_lucifugus
ENSSSCG00000004516	MBD1	100	68.264	ENSNGAG00000011412	Mbd1	100	68.264	Nannospalax_galili
ENSSSCG00000004516	MBD1	100	85.620	ENSNLEG00000011661	-	100	85.620	Nomascus_leucogenys
ENSSSCG00000004516	MBD1	98	71.924	ENSNLEG00000032711	-	94	67.000	Nomascus_leucogenys
ENSSSCG00000004516	MBD1	100	72.682	ENSOPRG00000007647	MBD1	100	72.682	Ochotona_princeps
ENSSSCG00000004516	MBD1	89	86.851	ENSODEG00000018451	MBD1	100	75.507	Octodon_degus
ENSSSCG00000004516	MBD1	84	46.396	ENSOANG00000014593	-	100	46.053	Ornithorhynchus_anatinus
ENSSSCG00000004516	MBD1	100	77.813	ENSOCUG00000006554	MBD1	99	81.029	Oryctolagus_cuniculus
ENSSSCG00000004516	MBD1	100	79.062	ENSOGAG00000003784	MBD1	95	81.646	Otolemur_garnettii
ENSSSCG00000004516	MBD1	100	84.494	ENSOARG00000004218	MBD1	94	86.859	Ovis_aries
ENSSSCG00000004516	MBD1	100	86.116	ENSPPAG00000038886	MBD1	100	86.116	Pan_paniscus
ENSSSCG00000004516	MBD1	100	90.149	ENSPPRG00000021387	MBD1	100	90.706	Panthera_pardus
ENSSSCG00000004516	MBD1	100	89.963	ENSPTIG00000021231	MBD1	100	90.520	Panthera_tigris_altaica
ENSSSCG00000004516	MBD1	98	88.145	ENSPTRG00000010021	MBD1	100	86.116	Pan_troglodytes
ENSSSCG00000004516	MBD1	98	88.528	ENSPANG00000010867	MBD1	99	83.923	Papio_anubis
ENSSSCG00000004516	MBD1	100	62.745	ENSPEMG00000022630	Mbd1	100	62.684	Peromyscus_maniculatus_bairdii
ENSSSCG00000004516	MBD1	96	47.120	ENSPCIG00000027937	-	79	47.404	Phascolarctos_cinereus
ENSSSCG00000004516	MBD1	72	33.500	ENSPMEG00000024145	mbd1b	50	31.553	Poecilia_mexicana
ENSSSCG00000004516	MBD1	100	86.281	ENSPPYG00000009158	MBD1	91	86.281	Pongo_abelii
ENSSSCG00000004516	MBD1	99	76.159	ENSPCAG00000001648	MBD1	90	88.213	Procavia_capensis
ENSSSCG00000004516	MBD1	100	86.964	ENSPCOG00000012450	MBD1	100	89.602	Propithecus_coquereli
ENSSSCG00000004516	MBD1	100	55.888	ENSRNOG00000024104	Mbd1	100	55.929	Rattus_norvegicus
ENSSSCG00000004516	MBD1	97	82.267	ENSRBIG00000041294	MBD1	99	83.029	Rhinopithecus_bieti
ENSSSCG00000004516	MBD1	100	88.246	ENSRROG00000032517	MBD1	100	88.246	Rhinopithecus_roxellana
ENSSSCG00000004516	MBD1	98	85.642	ENSSBOG00000027169	MBD1	97	83.333	Saimiri_boliviensis_boliviensis
ENSSSCG00000004516	MBD1	82	44.850	ENSSHAG00000003661	-	100	47.335	Sarcophilus_harrisii
ENSSSCG00000004516	MBD1	53	53.333	ENSSPAG00000021447	mbd1b	51	35.673	Stegastes_partitus
ENSSSCG00000004516	MBD1	70	30.508	ENSTRUG00000013422	mbd1b	50	31.175	Takifugu_rubripes
ENSSSCG00000004516	MBD1	75	81.435	ENSTBEG00000012651	-	68	82.083	Tupaia_belangeri
ENSSSCG00000004516	MBD1	100	85.667	ENSTTRG00000015523	MBD1	100	86.491	Tursiops_truncatus
ENSSSCG00000004516	MBD1	100	91.129	ENSUAMG00000004752	MBD1	100	91.613	Ursus_americanus
ENSSSCG00000004516	MBD1	100	87.974	ENSUMAG00000002947	MBD1	100	88.468	Ursus_maritimus