EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000004974 (Gene tree)
Gene ID: 100522415
Gene Symbol: LARP6
Alias: FLJ11196|acheron
Full Name: La ribonucleoprotein domain family member 6
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 26673 bases
Position: chr1:168503612-168530284
Accession: 100522415
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000052707	La	PF05383.17	1.7e-20	1	1
ENSSSCP00000005349	La	PF05383.17	1.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000005486	LARP6-202	2036	-	ENSSSCP00000005349	462 (aa)	-	F1SIT3
ENSSSCT00000063284	LARP6-201	6936	XM_003121764	ENSSSCP00000052707	492 (aa)	XP_003121812	A0A287B9D1

Gene Model

Click here to download ENSSSCG00000004974's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000004974's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000004974	LARP6	100	93.496	ENSG00000166173	LARP6	100	100.000	Homo_sapiens
ENSSSCG00000004974	LARP6	95	57.645	ENSAPOG00000021773	larp6a	63	60.000	Acanthochromis_polyacanthus
ENSSSCG00000004974	LARP6	87	90.654	ENSAMEG00000008897	LARP6	100	90.654	Ailuropoda_melanoleuca
ENSSSCG00000004974	LARP6	95	58.678	ENSACIG00000005166	larp6a	86	60.449	Amphilophus_citrinellus
ENSSSCG00000004974	LARP6	95	57.645	ENSAOCG00000002284	larp6a	63	60.000	Amphiprion_ocellaris
ENSSSCG00000004974	LARP6	95	58.058	ENSAPEG00000008077	larp6a	84	60.000	Amphiprion_percula
ENSSSCG00000004974	LARP6	95	57.645	ENSATEG00000004018	larp6a	62	60.000	Anabas_testudineus
ENSSSCG00000004974	LARP6	85	69.976	ENSAPLG00000009914	LARP6	99	69.976	Anas_platyrhynchos
ENSSSCG00000004974	LARP6	84	66.587	ENSACAG00000008613	LARP6	98	66.587	Anolis_carolinensis
ENSSSCG00000004974	LARP6	100	93.293	ENSANAG00000024860	LARP6	100	93.293	Aotus_nancymaae
ENSSSCG00000004974	LARP6	95	58.058	ENSACLG00000018561	larp6a	61	60.225	Astatotilapia_calliptera
ENSSSCG00000004974	LARP6	83	41.990	ENSAMXG00000036816	-	93	41.505	Astyanax_mexicanus
ENSSSCG00000004974	LARP6	89	58.297	ENSAMXG00000029387	larp6a	67	59.121	Astyanax_mexicanus
ENSSSCG00000004974	LARP6	100	94.715	ENSBTAG00000003915	LARP6	100	94.715	Bos_taurus
ENSSSCG00000004974	LARP6	100	93.089	ENSCJAG00000018642	-	100	93.089	Callithrix_jacchus
ENSSSCG00000004974	LARP6	100	92.480	ENSCJAG00000046236	-	100	92.480	Callithrix_jacchus
ENSSSCG00000004974	LARP6	86	92.471	ENSCAFG00000017616	LARP6	99	92.471	Canis_familiaris
ENSSSCG00000004974	LARP6	100	90.041	ENSCAFG00020007296	LARP6	100	90.854	Canis_lupus_dingo
ENSSSCG00000004974	LARP6	100	94.309	ENSCHIG00000013742	LARP6	100	94.309	Capra_hircus
ENSSSCG00000004974	LARP6	86	91.059	ENSTSYG00000028124	LARP6	87	91.059	Carlito_syrichta
ENSSSCG00000004974	LARP6	86	90.094	ENSCAPG00000015452	LARP6	99	90.094	Cavia_aperea
ENSSSCG00000004974	LARP6	100	89.047	ENSCPOG00000022687	LARP6	100	89.047	Cavia_porcellus
ENSSSCG00000004974	LARP6	100	93.089	ENSCCAG00000036320	LARP6	100	93.089	Cebus_capucinus
ENSSSCG00000004974	LARP6	100	93.699	ENSCATG00000042432	LARP6	100	93.699	Cercocebus_atys
ENSSSCG00000004974	LARP6	100	90.872	ENSCLAG00000007893	LARP6	100	90.872	Chinchilla_lanigera
ENSSSCG00000004974	LARP6	100	94.106	ENSCSAG00000013672	LARP6	100	94.106	Chlorocebus_sabaeus
ENSSSCG00000004974	LARP6	97	91.632	ENSCHOG00000003318	LARP6	100	91.632	Choloepus_hoffmanni
ENSSSCG00000004974	LARP6	89	68.879	ENSCPBG00000010771	LARP6	84	68.879	Chrysemys_picta_bellii
ENSSSCG00000004974	LARP6	86	94.824	ENSCANG00000025833	LARP6	100	94.824	Colobus_angolensis_palliatus
ENSSSCG00000004974	LARP6	99	89.388	ENSCGRG00001024472	Larp6	99	89.388	Cricetulus_griseus_chok1gshd
ENSSSCG00000004974	LARP6	99	89.388	ENSCGRG00000004527	Larp6	99	89.388	Cricetulus_griseus_crigri
ENSSSCG00000004974	LARP6	95	57.971	ENSCSEG00000011196	larp6a	65	60.135	Cynoglossus_semilaevis
ENSSSCG00000004974	LARP6	87	59.641	ENSCVAG00000009605	larp6a	65	59.641	Cyprinodon_variegatus
ENSSSCG00000004974	LARP6	87	58.482	ENSDARG00000005355	larp6a	97	61.268	Danio_rerio
ENSSSCG00000004974	LARP6	100	91.463	ENSDNOG00000042993	LARP6	100	91.057	Dasypus_novemcinctus
ENSSSCG00000004974	LARP6	100	80.364	ENSDORG00000023910	Larp6	100	79.555	Dipodomys_ordii
ENSSSCG00000004974	LARP6	79	88.931	ENSETEG00000020390	LARP6	78	88.931	Echinops_telfairi
ENSSSCG00000004974	LARP6	100	94.512	ENSEASG00005005490	LARP6	73	94.512	Equus_asinus_asinus
ENSSSCG00000004974	LARP6	100	94.309	ENSECAG00000014190	LARP6	100	94.309	Equus_caballus
ENSSSCG00000004974	LARP6	87	59.284	ENSELUG00000007341	larp6a	64	59.284	Esox_lucius
ENSSSCG00000004974	LARP6	100	91.667	ENSFCAG00000001361	LARP6	100	91.667	Felis_catus
ENSSSCG00000004974	LARP6	97	64.792	ENSFALG00000012389	LARP6	99	64.124	Ficedula_albicollis
ENSSSCG00000004974	LARP6	89	90.455	ENSFDAG00000019994	LARP6	86	90.455	Fukomys_damarensis
ENSSSCG00000004974	LARP6	87	59.641	ENSFHEG00000010312	larp6a	63	59.641	Fundulus_heteroclitus
ENSSSCG00000004974	LARP6	89	69.615	ENSGALG00000004046	LARP6	89	69.615	Gallus_gallus
ENSSSCG00000004974	LARP6	87	59.865	ENSGAFG00000009426	larp6a	65	59.865	Gambusia_affinis
ENSSSCG00000004974	LARP6	86	60.412	ENSGACG00000014622	larp6a	97	60.412	Gasterosteus_aculeatus
ENSSSCG00000004974	LARP6	81	69.424	ENSGAGG00000010802	LARP6	59	69.424	Gopherus_agassizii
ENSSSCG00000004974	LARP6	86	94.588	ENSGGOG00000024151	LARP6	100	94.588	Gorilla_gorilla
ENSSSCG00000004974	LARP6	95	58.058	ENSHBUG00000021014	larp6a	61	60.225	Haplochromis_burtoni
ENSSSCG00000004974	LARP6	100	90.101	ENSHGLG00000015112	LARP6	100	90.101	Heterocephalus_glaber_female
ENSSSCG00000004974	LARP6	86	92.471	ENSHGLG00100013159	LARP6	100	92.471	Heterocephalus_glaber_male
ENSSSCG00000004974	LARP6	95	56.557	ENSHCOG00000001241	larp6a	84	59.009	Hippocampus_comes
ENSSSCG00000004974	LARP6	85	60.092	ENSIPUG00000010187	larp6	65	61.009	Ictalurus_punctatus
ENSSSCG00000004974	LARP6	91	36.842	ENSIPUG00000002828	-	96	36.842	Ictalurus_punctatus
ENSSSCG00000004974	LARP6	94	93.492	ENSSTOG00000024279	LARP6	98	93.584	Ictidomys_tridecemlineatus
ENSSSCG00000004974	LARP6	100	87.602	ENSJJAG00000011013	Larp6	100	87.602	Jaculus_jaculus
ENSSSCG00000004974	LARP6	87	60.850	ENSKMAG00000001702	larp6a	60	60.850	Kryptolebias_marmoratus
ENSSSCG00000004974	LARP6	95	56.173	ENSLBEG00000000170	larp6a	84	57.942	Labrus_bergylta
ENSSSCG00000004974	LARP6	97	64.375	ENSLACG00000018706	LARP6	90	63.750	Latimeria_chalumnae
ENSSSCG00000004974	LARP6	84	40.047	ENSLACG00000002786	-	98	42.453	Latimeria_chalumnae
ENSSSCG00000004974	LARP6	96	60.619	ENSLOCG00000014592	larp6a	69	59.631	Lepisosteus_oculatus
ENSSSCG00000004974	LARP6	86	43.649	ENSLOCG00000008547	-	84	42.725	Lepisosteus_oculatus
ENSSSCG00000004974	LARP6	91	92.170	ENSLAFG00000016343	LARP6	100	92.170	Loxodonta_africana
ENSSSCG00000004974	LARP6	91	95.111	ENSMFAG00000035507	LARP6	100	95.111	Macaca_fascicularis
ENSSSCG00000004974	LARP6	100	91.057	ENSMMUG00000004429	LARP6	100	90.650	Macaca_mulatta
ENSSSCG00000004974	LARP6	100	93.902	ENSMNEG00000045335	LARP6	100	93.902	Macaca_nemestrina
ENSSSCG00000004974	LARP6	86	94.824	ENSMLEG00000038587	LARP6	100	94.824	Mandrillus_leucophaeus
ENSSSCG00000004974	LARP6	95	57.819	ENSMAMG00000005261	larp6a	62	60.179	Mastacembelus_armatus
ENSSSCG00000004974	LARP6	95	58.058	ENSMZEG00005005774	larp6a	61	60.225	Maylandia_zebra
ENSSSCG00000004974	LARP6	85	70.853	ENSMGAG00000005077	LARP6	99	70.853	Meleagris_gallopavo
ENSSSCG00000004974	LARP6	99	89.388	ENSMAUG00000018486	Larp6	99	89.388	Mesocricetus_auratus
ENSSSCG00000004974	LARP6	100	90.650	ENSMICG00000011234	LARP6	100	90.650	Microcebus_murinus
ENSSSCG00000004974	LARP6	100	88.821	ENSMOCG00000010492	Larp6	100	88.821	Microtus_ochrogaster
ENSSSCG00000004974	LARP6	95	58.385	ENSMMOG00000016284	larp6a	85	60.360	Mola_mola
ENSSSCG00000004974	LARP6	97	75.208	ENSMODG00000009034	LARP6	93	75.208	Monodelphis_domestica
ENSSSCG00000004974	LARP6	95	58.436	ENSMALG00000014439	larp6a	84	60.314	Monopterus_albus
ENSSSCG00000004974	LARP6	100	89.634	MGP_CAROLIEiJ_G0032314	Larp6	100	89.634	Mus_caroli
ENSSSCG00000004974	LARP6	100	89.634	ENSMUSG00000034839	Larp6	100	89.634	Mus_musculus
ENSSSCG00000004974	LARP6	100	88.821	MGP_PahariEiJ_G0015180	Larp6	100	88.821	Mus_pahari
ENSSSCG00000004974	LARP6	100	89.431	MGP_SPRETEiJ_G0033452	Larp6	100	89.431	Mus_spretus
ENSSSCG00000004974	LARP6	87	90.654	ENSMPUG00000017086	LARP6	100	90.654	Mustela_putorius_furo
ENSSSCG00000004974	LARP6	100	92.276	ENSMLUG00000010319	LARP6	100	92.276	Myotis_lucifugus
ENSSSCG00000004974	LARP6	100	90.244	ENSNGAG00000014238	Larp6	100	90.244	Nannospalax_galili
ENSSSCG00000004974	LARP6	95	58.471	ENSNBRG00000008120	larp6a	84	60.225	Neolamprologus_brichardi
ENSSSCG00000004974	LARP6	100	92.886	ENSNLEG00000013691	LARP6	100	91.667	Nomascus_leucogenys
ENSSSCG00000004974	LARP6	85	75.419	ENSMEUG00000002270	LARP6	98	65.638	Notamacropus_eugenii
ENSSSCG00000004974	LARP6	72	78.125	ENSOPRG00000004868	-	100	78.125	Ochotona_princeps
ENSSSCG00000004974	LARP6	100	86.613	ENSODEG00000015958	LARP6	100	86.613	Octodon_degus
ENSSSCG00000004974	LARP6	95	58.025	ENSONIG00000002901	larp6a	84	60.179	Oreochromis_niloticus
ENSSSCG00000004974	LARP6	86	81.604	ENSOCUG00000009306	LARP6	99	81.604	Oryctolagus_cuniculus
ENSSSCG00000004974	LARP6	95	58.264	ENSORLG00000014256	larp6a	86	60.811	Oryzias_latipes
ENSSSCG00000004974	LARP6	95	58.264	ENSORLG00020019657	larp6a	63	60.811	Oryzias_latipes_hni
ENSSSCG00000004974	LARP6	95	58.264	ENSORLG00015017915	larp6a	63	60.811	Oryzias_latipes_hsok
ENSSSCG00000004974	LARP6	95	58.264	ENSOMEG00000017049	larp6a	63	60.811	Oryzias_melastigma
ENSSSCG00000004974	LARP6	100	90.447	ENSOGAG00000000522	LARP6	100	90.447	Otolemur_garnettii
ENSSSCG00000004974	LARP6	87	93.925	ENSOARG00000018750	LARP6	99	93.925	Ovis_aries
ENSSSCG00000004974	LARP6	86	94.588	ENSPPAG00000031247	LARP6	100	94.588	Pan_paniscus
ENSSSCG00000004974	LARP6	100	91.463	ENSPPRG00000011282	LARP6	100	91.463	Panthera_pardus
ENSSSCG00000004974	LARP6	86	91.529	ENSPTIG00000015318	LARP6	86	91.529	Panthera_tigris_altaica
ENSSSCG00000004974	LARP6	100	93.496	ENSPTRG00000007234	LARP6	100	93.496	Pan_troglodytes
ENSSSCG00000004974	LARP6	100	93.902	ENSPANG00000016362	LARP6	100	93.902	Papio_anubis
ENSSSCG00000004974	LARP6	95	57.434	ENSPKIG00000004511	LARP6	67	58.261	Paramormyrops_kingsleyae
ENSSSCG00000004974	LARP6	96	59.336	ENSPKIG00000020103	larp6a	84	61.521	Paramormyrops_kingsleyae
ENSSSCG00000004974	LARP6	64	80.000	ENSPSIG00000009071	LARP6	89	80.000	Pelodiscus_sinensis
ENSSSCG00000004974	LARP6	95	58.264	ENSPMGG00000006958	larp6a	86	60.899	Periophthalmus_magnuspinnatus
ENSSSCG00000004974	LARP6	99	89.796	ENSPEMG00000012909	Larp6	99	89.796	Peromyscus_maniculatus_bairdii
ENSSSCG00000004974	LARP6	99	74.847	ENSPCIG00000020765	LARP6	95	74.847	Phascolarctos_cinereus
ENSSSCG00000004974	LARP6	87	59.821	ENSPFOG00000014175	larp6a	84	59.821	Poecilia_formosa
ENSSSCG00000004974	LARP6	87	59.865	ENSPLAG00000011105	larp6a	62	59.865	Poecilia_latipinna
ENSSSCG00000004974	LARP6	87	59.641	ENSPMEG00000011085	larp6a	63	59.641	Poecilia_mexicana
ENSSSCG00000004974	LARP6	87	59.865	ENSPREG00000008067	larp6a	63	59.865	Poecilia_reticulata
ENSSSCG00000004974	LARP6	100	93.496	ENSPPYG00000006604	LARP6	100	93.496	Pongo_abelii
ENSSSCG00000004974	LARP6	65	92.771	ENSPCAG00000014197	LARP6	76	92.771	Procavia_capensis
ENSSSCG00000004974	LARP6	100	91.260	ENSPCOG00000022934	LARP6	100	91.260	Propithecus_coquereli
ENSSSCG00000004974	LARP6	100	94.106	ENSPVAG00000005618	LARP6	100	94.106	Pteropus_vampyrus
ENSSSCG00000004974	LARP6	95	58.471	ENSPNYG00000009835	larp6a	84	60.225	Pundamilia_nyererei
ENSSSCG00000004974	LARP6	87	58.837	ENSPNAG00000017966	larp6a	72	59.732	Pygocentrus_nattereri
ENSSSCG00000004974	LARP6	100	88.211	ENSRNOG00000012438	Larp6	100	88.211	Rattus_norvegicus
ENSSSCG00000004974	LARP6	98	91.546	ENSRBIG00000032902	LARP6	98	91.546	Rhinopithecus_bieti
ENSSSCG00000004974	LARP6	99	94.227	ENSRROG00000043074	LARP6	99	94.227	Rhinopithecus_roxellana
ENSSSCG00000004974	LARP6	86	93.882	ENSSBOG00000024190	LARP6	100	93.882	Saimiri_boliviensis_boliviensis
ENSSSCG00000004974	LARP6	87	74.299	ENSSHAG00000018495	LARP6	100	74.299	Sarcophilus_harrisii
ENSSSCG00000004974	LARP6	85	60.046	ENSSFOG00015023268	larp6a	82	60.798	Scleropages_formosus
ENSSSCG00000004974	LARP6	95	53.390	ENSSFOG00015002254	LARP6	91	52.830	Scleropages_formosus
ENSSSCG00000004974	LARP6	95	57.764	ENSSMAG00000009953	larp6a	62	59.685	Scophthalmus_maximus
ENSSSCG00000004974	LARP6	95	58.351	ENSSDUG00000007438	larp6a	62	60.538	Seriola_dumerili
ENSSSCG00000004974	LARP6	95	58.351	ENSSLDG00000016647	larp6a	62	60.538	Seriola_lalandi_dorsalis
ENSSSCG00000004974	LARP6	86	70.616	ENSSPUG00000011312	LARP6	99	70.616	Sphenodon_punctatus
ENSSSCG00000004974	LARP6	95	57.645	ENSSPAG00000020502	larp6a	62	60.000	Stegastes_partitus
ENSSSCG00000004974	LARP6	85	69.431	ENSTGUG00000005808	LARP6	99	69.431	Taeniopygia_guttata
ENSSSCG00000004974	LARP6	95	57.407	ENSTRUG00000003151	larp6a	65	59.688	Takifugu_rubripes
ENSSSCG00000004974	LARP6	95	56.965	ENSTNIG00000011926	larp6a	88	58.810	Tetraodon_nigroviridis
ENSSSCG00000004974	LARP6	86	89.882	ENSTBEG00000015077	LARP6	100	89.882	Tupaia_belangeri
ENSSSCG00000004974	LARP6	87	89.486	ENSUAMG00000010467	LARP6	87	89.302	Ursus_americanus
ENSSSCG00000004974	LARP6	86	92.235	ENSVVUG00000015227	LARP6	95	92.235	Vulpes_vulpes
ENSSSCG00000004974	LARP6	96	66.176	ENSXETG00000020340	larp6	88	68.879	Xenopus_tropicalis
ENSSSCG00000004974	LARP6	87	60.090	ENSXCOG00000012654	larp6a	89	60.090	Xiphophorus_couchianus
ENSSSCG00000004974	LARP6	87	60.090	ENSXMAG00000021015	larp6a	60	60.090	Xiphophorus_maculatus