EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSSSCG00000005012 (Gene tree)
Gene ID: 780425
Gene Symbol: ARF6
Alias: -
Full Name: ADP ribosylation factor 6
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 21520 bases
Position: chr1:179712932-179734451
Accession: 780425
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000005391	MMR_HSR1	PF01926.23	0.00017	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000058177	ARF6-201	3896	XM_005659939	ENSSSCP00000058854	175 (aa)	XP_005659996	Q007T5
ENSSSCT00000005528	ARF6-202	1033	-	ENSSSCP00000005391	148 (aa)	-	A0A2C9F363

Gene Model

Click here to download ENSSSCG00000005012's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc04014	Ras signaling pathway	KEGG
ssc04072	Phospholipase D signaling pathway	KEGG
ssc04144	Endocytosis	KEGG
ssc04666	Fc gamma R-mediated phagocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000005012's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000005012	ARF6	93	49.635	ENSSSCG00000031782	ARL3	80	49.635
ENSSSCG00000005012	ARF6	95	36.879	ENSSSCG00000036967	ARL8A	76	36.879
ENSSSCG00000005012	ARF6	100	44.000	ENSSSCG00000011734	ARL14	78	44.000
ENSSSCG00000005012	ARF6	97	42.953	ENSSSCG00000027278	ARL6	80	42.953
ENSSSCG00000005012	ARF6	95	46.575	ENSSSCG00000034293	ARL4C	76	46.575
ENSSSCG00000005012	ARF6	99	44.000	ENSSSCG00000031541	ARL5A	84	44.000
ENSSSCG00000005012	ARF6	86	30.935	ENSSSCG00000032467	RAB5C	62	30.935
ENSSSCG00000005012	ARF6	80	30.000	ENSSSCG00000037653	RAB5A	58	30.000
ENSSSCG00000005012	ARF6	89	36.090	ENSSSCG00000029985	ARL10	56	35.088
ENSSSCG00000005012	ARF6	100	69.595	ENSSSCG00000031381	-	82	69.595
ENSSSCG00000005012	ARF6	100	65.541	ENSSSCG00000016593	ARF5	82	65.541
ENSSSCG00000005012	ARF6	100	68.421	ENSSSCG00000013992	-	84	68.421
ENSSSCG00000005012	ARF6	100	42.667	ENSSSCG00000036810	ARL11	75	42.667
ENSSSCG00000005012	ARF6	93	49.275	ENSSSCG00000034387	ARL2-SNX15	65	49.275
ENSSSCG00000005012	ARF6	93	44.755	ENSSSCG00000032709	ARL4A	72	44.755
ENSSSCG00000005012	ARF6	87	35.036	ENSSSCG00000035304	ARFRP1	68	35.036
ENSSSCG00000005012	ARF6	88	38.346	ENSSSCG00000010260	SAR1A	66	38.346
ENSSSCG00000005012	ARF6	88	43.704	ENSSSCG00000017380	ARL4D	68	43.704
ENSSSCG00000005012	ARF6	99	65.986	ENSSSCG00000031791	ARF4	82	65.986
ENSSSCG00000005012	ARF6	99	69.863	ENSSSCG00000031893	-	81	69.863
ENSSSCG00000005012	ARF6	93	59.854	ENSSSCG00000000870	ARL1	81	57.823
ENSSSCG00000005012	ARF6	88	38.346	ENSSSCG00000014305	SAR1B	66	38.346
ENSSSCG00000005012	ARF6	95	38.298	ENSSSCG00000011535	-	76	38.298
ENSSSCG00000005012	ARF6	99	43.333	ENSSSCG00000031456	ARL5B	83	43.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000005012	ARF6	100	97.368	ENSAPLG00000001640	ARF6	85	97.368	Anas_platyrhynchos
ENSSSCG00000005012	ARF6	100	99.324	ENSACAG00000001335	ARF6	85	99.324	Anolis_carolinensis
ENSSSCG00000005012	ARF6	95	98.582	ENSLBEG00000024782	ARF6	77	98.582	Labrus_bergylta
ENSSSCG00000005012	ARF6	100	100.000	ENSMFAG00000001534	ARF6	100	100.000	Macaca_fascicularis
ENSSSCG00000005012	ARF6	100	100.000	ENSMNEG00000035341	ARF6	100	100.000	Macaca_nemestrina
ENSSSCG00000005012	ARF6	97	70.548	ENSPMAG00000010222	ARF6	81	70.548	Petromyzon_marinus
ENSSSCG00000005012	ARF6	93	99.270	ENSPVAG00000017937	ARF6	100	99.270	Pteropus_vampyrus
ENSSSCG00000005012	ARF6	100	100.000	ENSSMAG00000006815	ARF6	100	100.000	Scophthalmus_maximus
ENSSSCG00000005012	ARF6	100	96.622	ENSTNIG00000019582	arf6b	85	96.622	Tetraodon_nigroviridis
ENSSSCG00000005012	ARF6	100	100.000	ENSUMAG00000007345	ARF6	98	100.000	Ursus_maritimus
ENSSSCG00000005012	ARF6	100	100.000	ENSVVUG00000029816	ARF6	90	100.000	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001889	liver development	-	IEA	Process
GO:0005768	endosome	-	ISS	Component
GO:0005794	Golgi apparatus	-	IEA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005886	plasma membrane	-	ISS	Component
GO:0005938	cell cortex	-	IEA	Component
GO:0030139	endocytic vesicle	-	ISS	Component
GO:0030838	positive regulation of actin filament polymerization	-	IEA	Process
GO:0030866	cortical actin cytoskeleton organization	-	IEA	Process
GO:0031527	filopodium membrane	-	IEA	Component
GO:0031901	early endosome membrane	-	IEA	Component
GO:0031996	thioesterase binding	-	IEA	Function
GO:0032154	cleavage furrow	-	ISS	Component
GO:0032456	endocytic recycling	-	IEA	Process
GO:0033028	myeloid cell apoptotic process	-	IEA	Process
GO:0034394	protein localization to cell surface	-	IEA	Process
GO:0035020	regulation of Rac protein signal transduction	-	IEA	Process
GO:0036010	protein localization to endosome	-	ISS	Process
GO:0047485	protein N-terminus binding	-	IEA	Function
GO:0050714	positive regulation of protein secretion	-	IEA	Process
GO:0051489	regulation of filopodium assembly	-	IEA	Process
GO:0051549	positive regulation of keratinocyte migration	-	IEA	Process
GO:0055038	recycling endosome membrane	-	ISS	Component
GO:0060998	regulation of dendritic spine development	-	ISS	Process
GO:0090073	positive regulation of protein homodimerization activity	-	IEA	Process
GO:0090162	establishment of epithelial cell polarity	-	IEA	Process
GO:0090543	Flemming body	-	ISS	Component
GO:0097178	ruffle assembly	-	IEA	Process
GO:0097284	hepatocyte apoptotic process	-	IEA	Process
GO:1903078	positive regulation of protein localization to plasma membrane	-	IEA	Process
GO:1903393	positive regulation of adherens junction organization	-	IEA	Process
GO:2000009	negative regulation of protein localization to cell surface	-	IEA	Process