EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000005217 (Gene tree)
Gene ID: 100154484
Gene Symbol: RCL1
Alias: RNAC|RPCL1
Full Name: RNA terminal phosphate cyclase like 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 62445 bases
Position: chr1:217142880-217205324
Accession: 100154484
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000005608	RTC	PF01137.21	4.7e-61	1	1
ENSSSCP00000005608	RTC_insert	PF05189.13	1.2e-36	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000005750	RCL1-201	2460	XM_001926437	ENSSSCP00000005608	450 (aa)	XP_001926472	F1SK46

Gene Model

Click here to download ENSSSCG00000005217's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000005217's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000005217	RCL1	83	98.123	ENSG00000120158	RCL1	100	99.070	Homo_sapiens
ENSSSCG00000005217	RCL1	83	79.144	ENSAPOG00000015666	rcl1	100	79.144	Acanthochromis_polyacanthus
ENSSSCG00000005217	RCL1	83	97.855	ENSAMEG00000002631	RCL1	100	97.855	Ailuropoda_melanoleuca
ENSSSCG00000005217	RCL1	82	78.919	ENSACIG00000021195	rcl1	99	78.919	Amphilophus_citrinellus
ENSSSCG00000005217	RCL1	83	78.342	ENSAOCG00000002223	rcl1	100	78.342	Amphiprion_ocellaris
ENSSSCG00000005217	RCL1	83	78.610	ENSAPEG00000006905	rcl1	100	78.610	Amphiprion_percula
ENSSSCG00000005217	RCL1	82	76.757	ENSATEG00000020026	rcl1	99	76.757	Anabas_testudineus
ENSSSCG00000005217	RCL1	73	87.500	ENSAPLG00000006031	RCL1	100	87.500	Anas_platyrhynchos
ENSSSCG00000005217	RCL1	83	85.791	ENSACAG00000003640	RCL1	100	85.791	Anolis_carolinensis
ENSSSCG00000005217	RCL1	83	97.319	ENSANAG00000037372	RCL1	100	97.319	Aotus_nancymaae
ENSSSCG00000005217	RCL1	82	78.919	ENSACLG00000021724	rcl1	99	78.919	Astatotilapia_calliptera
ENSSSCG00000005217	RCL1	82	78.533	ENSAMXG00000033394	rcl1	99	78.533	Astyanax_mexicanus
ENSSSCG00000005217	RCL1	82	46.809	WBGene00022852	ZK1127.5	99	46.809	Caenorhabditis_elegans
ENSSSCG00000005217	RCL1	83	97.855	ENSCJAG00000011202	RCL1	100	97.855	Callithrix_jacchus
ENSSSCG00000005217	RCL1	83	96.515	ENSCAFG00000002091	RCL1	100	96.515	Canis_familiaris
ENSSSCG00000005217	RCL1	99	87.333	ENSCAFG00020000638	RCL1	94	87.333	Canis_lupus_dingo
ENSSSCG00000005217	RCL1	83	96.247	ENSCHIG00000012407	RCL1	100	96.247	Capra_hircus
ENSSSCG00000005217	RCL1	73	98.165	ENSTSYG00000009592	RCL1	97	98.343	Carlito_syrichta
ENSSSCG00000005217	RCL1	56	79.769	ENSCAPG00000013575	RCL1	100	79.769	Cavia_aperea
ENSSSCG00000005217	RCL1	83	96.783	ENSCPOG00000015354	RCL1	100	96.783	Cavia_porcellus
ENSSSCG00000005217	RCL1	83	97.855	ENSCCAG00000033505	RCL1	100	97.855	Cebus_capucinus
ENSSSCG00000005217	RCL1	83	97.051	ENSCATG00000034721	RCL1	100	97.051	Cercocebus_atys
ENSSSCG00000005217	RCL1	83	97.319	ENSCLAG00000007445	RCL1	100	97.319	Chinchilla_lanigera
ENSSSCG00000005217	RCL1	83	97.587	ENSCSAG00000008811	RCL1	100	97.587	Chlorocebus_sabaeus
ENSSSCG00000005217	RCL1	72	81.734	ENSCHOG00000007216	RCL1	100	81.734	Choloepus_hoffmanni
ENSSSCG00000005217	RCL1	96	81.062	ENSCPBG00000025481	RCL1	94	89.970	Chrysemys_picta_bellii
ENSSSCG00000005217	RCL1	81	59.189	ENSCING00000019565	-	98	59.189	Ciona_intestinalis
ENSSSCG00000005217	RCL1	83	97.855	ENSCANG00000027099	RCL1	100	97.855	Colobus_angolensis_palliatus
ENSSSCG00000005217	RCL1	83	95.979	ENSCGRG00001013748	Rcl1	100	95.979	Cricetulus_griseus_chok1gshd
ENSSSCG00000005217	RCL1	73	96.037	ENSCGRG00000005843	Rcl1	99	96.037	Cricetulus_griseus_crigri
ENSSSCG00000005217	RCL1	82	79.189	ENSCSEG00000000712	rcl1	97	79.189	Cynoglossus_semilaevis
ENSSSCG00000005217	RCL1	82	80.541	ENSCVAG00000011536	rcl1	99	80.541	Cyprinodon_variegatus
ENSSSCG00000005217	RCL1	81	76.839	ENSDARG00000038312	rcl1	100	76.839	Danio_rerio
ENSSSCG00000005217	RCL1	59	96.604	ENSDNOG00000019911	RCL1	100	97.209	Dasypus_novemcinctus
ENSSSCG00000005217	RCL1	83	96.247	ENSDORG00000015645	Rcl1	100	96.247	Dipodomys_ordii
ENSSSCG00000005217	RCL1	82	53.439	FBgn0020909	Rtc1	98	53.439	Drosophila_melanogaster
ENSSSCG00000005217	RCL1	60	100.000	ENSETEG00000014087	-	82	100.000	Echinops_telfairi
ENSSSCG00000005217	RCL1	83	53.600	ENSEBUG00000016621	-	100	53.600	Eptatretus_burgeri
ENSSSCG00000005217	RCL1	83	97.855	ENSEASG00005010653	RCL1	100	97.855	Equus_asinus_asinus
ENSSSCG00000005217	RCL1	83	97.855	ENSECAG00000015973	RCL1	100	97.855	Equus_caballus
ENSSSCG00000005217	RCL1	83	82.038	ENSEEUG00000009801	RCL1	100	82.038	Erinaceus_europaeus
ENSSSCG00000005217	RCL1	83	76.471	ENSELUG00000007353	rcl1	100	76.471	Esox_lucius
ENSSSCG00000005217	RCL1	83	95.442	ENSFCAG00000014557	RCL1	100	95.442	Felis_catus
ENSSSCG00000005217	RCL1	79	82.535	ENSFALG00000010553	RCL1	94	82.535	Ficedula_albicollis
ENSSSCG00000005217	RCL1	73	95.719	ENSFDAG00000004209	RCL1	100	95.719	Fukomys_damarensis
ENSSSCG00000005217	RCL1	84	78.158	ENSFHEG00000011228	rcl1	99	80.000	Fundulus_heteroclitus
ENSSSCG00000005217	RCL1	82	77.568	ENSGMOG00000004677	rcl1	99	77.568	Gadus_morhua
ENSSSCG00000005217	RCL1	82	86.179	ENSGALG00000015024	RCL1	99	86.179	Gallus_gallus
ENSSSCG00000005217	RCL1	82	78.378	ENSGAFG00000007257	rcl1	99	78.378	Gambusia_affinis
ENSSSCG00000005217	RCL1	83	77.807	ENSGACG00000017474	rcl1	100	77.807	Gasterosteus_aculeatus
ENSSSCG00000005217	RCL1	83	89.812	ENSGAGG00000003689	RCL1	100	89.812	Gopherus_agassizii
ENSSSCG00000005217	RCL1	83	97.587	ENSGGOG00000015041	RCL1	100	97.587	Gorilla_gorilla
ENSSSCG00000005217	RCL1	82	79.189	ENSHBUG00000001393	rcl1	99	79.189	Haplochromis_burtoni
ENSSSCG00000005217	RCL1	83	80.697	ENSHGLG00000005368	-	100	80.161	Heterocephalus_glaber_female
ENSSSCG00000005217	RCL1	83	96.515	ENSHGLG00000016452	RCL1	100	96.515	Heterocephalus_glaber_female
ENSSSCG00000005217	RCL1	83	89.544	ENSHGLG00100008718	-	100	89.544	Heterocephalus_glaber_male
ENSSSCG00000005217	RCL1	83	81.501	ENSHGLG00100018010	-	100	80.965	Heterocephalus_glaber_male
ENSSSCG00000005217	RCL1	82	78.108	ENSHCOG00000020170	rcl1	99	78.108	Hippocampus_comes
ENSSSCG00000005217	RCL1	82	80.707	ENSIPUG00000018054	RCL1	99	80.707	Ictalurus_punctatus
ENSSSCG00000005217	RCL1	83	96.515	ENSSTOG00000000023	RCL1	100	96.515	Ictidomys_tridecemlineatus
ENSSSCG00000005217	RCL1	83	84.718	ENSJJAG00000015632	-	100	84.718	Jaculus_jaculus
ENSSSCG00000005217	RCL1	83	95.710	ENSJJAG00000022803	-	100	95.710	Jaculus_jaculus
ENSSSCG00000005217	RCL1	81	78.202	ENSKMAG00000011946	rcl1	99	78.202	Kryptolebias_marmoratus
ENSSSCG00000005217	RCL1	82	76.216	ENSLBEG00000003957	rcl1	99	76.216	Labrus_bergylta
ENSSSCG00000005217	RCL1	78	79.261	ENSLACG00000004594	RCL1	98	85.174	Latimeria_chalumnae
ENSSSCG00000005217	RCL1	83	82.353	ENSLOCG00000010148	rcl1	99	82.353	Lepisosteus_oculatus
ENSSSCG00000005217	RCL1	83	93.298	ENSLAFG00000017495	RCL1	100	93.298	Loxodonta_africana
ENSSSCG00000005217	RCL1	83	97.587	ENSMFAG00000037906	RCL1	100	97.587	Macaca_fascicularis
ENSSSCG00000005217	RCL1	83	97.587	ENSMNEG00000012288	RCL1	100	97.587	Macaca_nemestrina
ENSSSCG00000005217	RCL1	83	97.587	ENSMLEG00000043088	RCL1	100	97.587	Mandrillus_leucophaeus
ENSSSCG00000005217	RCL1	82	79.189	ENSMAMG00000008311	rcl1	99	79.189	Mastacembelus_armatus
ENSSSCG00000005217	RCL1	82	78.919	ENSMZEG00005017292	rcl1	99	78.919	Maylandia_zebra
ENSSSCG00000005217	RCL1	83	96.247	ENSMICG00000015562	RCL1	100	96.247	Microcebus_murinus
ENSSSCG00000005217	RCL1	83	96.515	ENSMOCG00000012145	Rcl1	100	96.515	Microtus_ochrogaster
ENSSSCG00000005217	RCL1	82	75.741	ENSMMOG00000021264	rcl1	99	75.741	Mola_mola
ENSSSCG00000005217	RCL1	79	94.366	ENSMODG00000015377	RCL1	94	94.366	Monodelphis_domestica
ENSSSCG00000005217	RCL1	82	77.838	ENSMALG00000018618	rcl1	99	77.838	Monopterus_albus
ENSSSCG00000005217	RCL1	83	96.783	MGP_CAROLIEiJ_G0022853	Rcl1	100	96.783	Mus_caroli
ENSSSCG00000005217	RCL1	83	96.247	ENSMUSG00000024785	Rcl1	100	96.247	Mus_musculus
ENSSSCG00000005217	RCL1	83	96.247	MGP_PahariEiJ_G0014346	Rcl1	100	97.647	Mus_pahari
ENSSSCG00000005217	RCL1	83	96.515	MGP_SPRETEiJ_G0023771	Rcl1	100	97.059	Mus_spretus
ENSSSCG00000005217	RCL1	83	96.783	ENSMPUG00000004998	RCL1	100	96.783	Mustela_putorius_furo
ENSSSCG00000005217	RCL1	83	96.515	ENSMLUG00000009654	RCL1	100	96.515	Myotis_lucifugus
ENSSSCG00000005217	RCL1	83	96.783	ENSNGAG00000015327	Rcl1	100	96.783	Nannospalax_galili
ENSSSCG00000005217	RCL1	75	78.042	ENSNBRG00000019854	rcl1	96	74.581	Neolamprologus_brichardi
ENSSSCG00000005217	RCL1	83	94.906	ENSNLEG00000008891	RCL1	100	94.906	Nomascus_leucogenys
ENSSSCG00000005217	RCL1	83	87.668	ENSMEUG00000007653	RCL1	100	87.668	Notamacropus_eugenii
ENSSSCG00000005217	RCL1	83	95.979	ENSOPRG00000010965	RCL1	100	95.979	Ochotona_princeps
ENSSSCG00000005217	RCL1	73	79.217	ENSODEG00000004151	RCL1	96	80.183	Octodon_degus
ENSSSCG00000005217	RCL1	82	78.919	ENSONIG00000003871	rcl1	99	78.919	Oreochromis_niloticus
ENSSSCG00000005217	RCL1	56	87.352	ENSOANG00000013193	-	100	87.352	Ornithorhynchus_anatinus
ENSSSCG00000005217	RCL1	83	97.051	ENSOCUG00000008161	RCL1	100	97.051	Oryctolagus_cuniculus
ENSSSCG00000005217	RCL1	83	76.471	ENSORLG00000010443	rcl1	100	76.471	Oryzias_latipes
ENSSSCG00000005217	RCL1	83	76.471	ENSORLG00020012211	rcl1	100	76.471	Oryzias_latipes_hni
ENSSSCG00000005217	RCL1	83	76.203	ENSORLG00015001122	rcl1	100	76.203	Oryzias_latipes_hsok
ENSSSCG00000005217	RCL1	84	77.454	ENSOMEG00000022976	rcl1	88	77.454	Oryzias_melastigma
ENSSSCG00000005217	RCL1	83	95.442	ENSOGAG00000007480	RCL1	100	95.442	Otolemur_garnettii
ENSSSCG00000005217	RCL1	83	96.515	ENSOARG00000013463	RCL1	100	96.515	Ovis_aries
ENSSSCG00000005217	RCL1	83	97.855	ENSPPAG00000037958	RCL1	100	97.855	Pan_paniscus
ENSSSCG00000005217	RCL1	83	94.638	ENSPPRG00000022645	RCL1	100	94.638	Panthera_pardus
ENSSSCG00000005217	RCL1	72	95.706	ENSPTIG00000019031	RCL1	97	94.712	Panthera_tigris_altaica
ENSSSCG00000005217	RCL1	83	97.587	ENSPTRG00000020743	RCL1	100	97.587	Pan_troglodytes
ENSSSCG00000005217	RCL1	83	97.587	ENSPANG00000025151	RCL1	100	97.587	Papio_anubis
ENSSSCG00000005217	RCL1	83	78.610	ENSPKIG00000021022	rcl1	100	78.610	Paramormyrops_kingsleyae
ENSSSCG00000005217	RCL1	73	90.244	ENSPSIG00000012302	RCL1	100	90.244	Pelodiscus_sinensis
ENSSSCG00000005217	RCL1	83	76.471	ENSPMGG00000024007	rcl1	100	76.471	Periophthalmus_magnuspinnatus
ENSSSCG00000005217	RCL1	83	97.051	ENSPEMG00000023275	Rcl1	100	97.051	Peromyscus_maniculatus_bairdii
ENSSSCG00000005217	RCL1	79	31.302	ENSPMAG00000009110	rtca	95	31.302	Petromyzon_marinus
ENSSSCG00000005217	RCL1	83	94.638	ENSPCIG00000000188	RCL1	100	94.638	Phascolarctos_cinereus
ENSSSCG00000005217	RCL1	82	79.189	ENSPFOG00000019682	rcl1	99	79.189	Poecilia_formosa
ENSSSCG00000005217	RCL1	82	79.189	ENSPLAG00000022354	rcl1	99	79.189	Poecilia_latipinna
ENSSSCG00000005217	RCL1	82	79.189	ENSPMEG00000008131	rcl1	99	79.189	Poecilia_mexicana
ENSSSCG00000005217	RCL1	82	78.919	ENSPREG00000008032	rcl1	99	78.919	Poecilia_reticulata
ENSSSCG00000005217	RCL1	83	97.855	ENSPPYG00000019244	RCL1	100	97.855	Pongo_abelii
ENSSSCG00000005217	RCL1	83	85.523	ENSPCAG00000001440	RCL1	100	85.523	Procavia_capensis
ENSSSCG00000005217	RCL1	83	97.587	ENSPCOG00000009611	RCL1	100	97.587	Propithecus_coquereli
ENSSSCG00000005217	RCL1	83	97.587	ENSPVAG00000015752	RCL1	100	97.587	Pteropus_vampyrus
ENSSSCG00000005217	RCL1	82	78.919	ENSPNYG00000012910	rcl1	99	78.919	Pundamilia_nyererei
ENSSSCG00000005217	RCL1	88	75.188	ENSPNAG00000028307	rcl1	96	75.188	Pygocentrus_nattereri
ENSSSCG00000005217	RCL1	83	95.979	ENSRNOG00000015491	Rcl1	100	95.979	Rattus_norvegicus
ENSSSCG00000005217	RCL1	83	97.587	ENSRBIG00000035818	RCL1	100	97.587	Rhinopithecus_bieti
ENSSSCG00000005217	RCL1	83	97.587	ENSRROG00000029781	RCL1	100	97.587	Rhinopithecus_roxellana
ENSSSCG00000005217	RCL1	81	36.486	YOL010W	-	97	36.486	Saccharomyces_cerevisiae
ENSSSCG00000005217	RCL1	83	97.319	ENSSBOG00000026369	RCL1	100	97.319	Saimiri_boliviensis_boliviensis
ENSSSCG00000005217	RCL1	73	92.727	ENSSHAG00000014086	RCL1	100	92.727	Sarcophilus_harrisii
ENSSSCG00000005217	RCL1	83	79.679	ENSSFOG00015023020	rcl1	100	79.679	Scleropages_formosus
ENSSSCG00000005217	RCL1	82	79.189	ENSSMAG00000019751	rcl1	85	79.189	Scophthalmus_maximus
ENSSSCG00000005217	RCL1	83	78.075	ENSSDUG00000006349	rcl1	100	78.075	Seriola_dumerili
ENSSSCG00000005217	RCL1	83	78.342	ENSSLDG00000022076	rcl1	100	78.342	Seriola_lalandi_dorsalis
ENSSSCG00000005217	RCL1	83	96.515	ENSSARG00000009260	RCL1	100	96.515	Sorex_araneus
ENSSSCG00000005217	RCL1	83	88.740	ENSSPUG00000016330	RCL1	100	88.740	Sphenodon_punctatus
ENSSSCG00000005217	RCL1	83	80.214	ENSSPAG00000018038	rcl1	100	80.214	Stegastes_partitus
ENSSSCG00000005217	RCL1	83	85.067	ENSTGUG00000005138	RCL1	100	85.067	Taeniopygia_guttata
ENSSSCG00000005217	RCL1	82	78.919	ENSTRUG00000010493	rcl1	99	78.919	Takifugu_rubripes
ENSSSCG00000005217	RCL1	82	77.778	ENSTNIG00000013214	rcl1	99	77.778	Tetraodon_nigroviridis
ENSSSCG00000005217	RCL1	83	91.153	ENSTBEG00000016339	RCL1	100	91.153	Tupaia_belangeri
ENSSSCG00000005217	RCL1	83	97.319	ENSTTRG00000016525	RCL1	100	97.319	Tursiops_truncatus
ENSSSCG00000005217	RCL1	83	97.855	ENSUAMG00000005598	RCL1	100	97.855	Ursus_americanus
ENSSSCG00000005217	RCL1	73	97.248	ENSUMAG00000017890	RCL1	97	97.248	Ursus_maritimus
ENSSSCG00000005217	RCL1	73	98.471	ENSVPAG00000009188	RCL1	100	98.471	Vicugna_pacos
ENSSSCG00000005217	RCL1	73	96.951	ENSVVUG00000007304	RCL1	89	96.951	Vulpes_vulpes
ENSSSCG00000005217	RCL1	83	75.401	ENSXETG00000000592	rcl1	100	75.401	Xenopus_tropicalis
ENSSSCG00000005217	RCL1	82	79.189	ENSXCOG00000004922	rcl1	99	79.189	Xiphophorus_couchianus
ENSSSCG00000005217	RCL1	82	79.189	ENSXMAG00000022366	RCL1	99	79.189	Xiphophorus_maculatus