EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000005366 (Gene tree)
Gene ID: 106509205
Gene Symbol: NCBP1
Alias: CBP80|NCBP|Sto1
Full Name: nuclear cap binding protein subunit 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 51352 bases
Position: chr1:239492573-239543924
Accession: 106509205
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000005759	MIF4G_like	PF09088.11	2.3e-36	1	1
ENSSSCP00000005759	MIF4G_like_2	PF09090.11	4e-85	1	1
ENSSSCP00000005759	MIF4G	PF02854.19	1.4e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000005906	NCBP1-201	3783	XM_021066300	ENSSSCP00000005759	790 (aa)	XP_020921959	F1ST49

Gene Model

Click here to download ENSSSCG00000005366's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03013	RNA transport	KEGG
ssc03015	mRNA surveillance pathway	KEGG
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000005366's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000005366	NCBP1	100	99.494	ENSG00000136937	NCBP1	100	99.494	Homo_sapiens
ENSSSCG00000005366	NCBP1	99	83.627	ENSAPOG00000008002	NCBP1	99	82.997	Acanthochromis_polyacanthus
ENSSSCG00000005366	NCBP1	100	99.369	ENSAMEG00000004763	NCBP1	100	99.369	Ailuropoda_melanoleuca
ENSSSCG00000005366	NCBP1	99	83.985	ENSACIG00000000274	NCBP1	99	83.354	Amphilophus_citrinellus
ENSSSCG00000005366	NCBP1	99	83.753	ENSAOCG00000021148	NCBP1	99	83.123	Amphiprion_ocellaris
ENSSSCG00000005366	NCBP1	99	83.753	ENSAPEG00000001701	NCBP1	99	83.123	Amphiprion_percula
ENSSSCG00000005366	NCBP1	99	83.123	ENSATEG00000006929	NCBP1	99	82.746	Anabas_testudineus
ENSSSCG00000005366	NCBP1	95	90.357	ENSAPLG00000016318	NCBP1	100	90.489	Anas_platyrhynchos
ENSSSCG00000005366	NCBP1	100	87.141	ENSACAG00000004409	NCBP1	87	87.016	Anolis_carolinensis
ENSSSCG00000005366	NCBP1	100	96.582	ENSANAG00000025744	NCBP1	99	99.580	Aotus_nancymaae
ENSSSCG00000005366	NCBP1	99	82.872	ENSACLG00000014812	NCBP1	99	82.682	Astatotilapia_calliptera
ENSSSCG00000005366	NCBP1	99	81.784	ENSAMXG00000016364	NCBP1	99	81.281	Astyanax_mexicanus
ENSSSCG00000005366	NCBP1	100	99.241	ENSBTAG00000009732	NCBP1	100	99.241	Bos_taurus
ENSSSCG00000005366	NCBP1	99	34.649	WBGene00018156	ncbp-1	99	34.155	Caenorhabditis_elegans
ENSSSCG00000005366	NCBP1	100	99.494	ENSCJAG00000010840	NCBP1	100	99.559	Callithrix_jacchus
ENSSSCG00000005366	NCBP1	100	99.747	ENSCAFG00000002445	NCBP1	100	99.747	Canis_familiaris
ENSSSCG00000005366	NCBP1	99	98.859	ENSCAFG00020017997	NCBP1	100	99.707	Canis_lupus_dingo
ENSSSCG00000005366	NCBP1	100	98.987	ENSCHIG00000020139	NCBP1	100	98.987	Capra_hircus
ENSSSCG00000005366	NCBP1	52	97.330	ENSTSYG00000011914	NCBP1	98	99.687	Carlito_syrichta
ENSSSCG00000005366	NCBP1	81	89.219	ENSCAPG00000014252	NCBP1	90	89.062	Cavia_aperea
ENSSSCG00000005366	NCBP1	97	97.523	ENSCPOG00000012573	NCBP1	99	97.523	Cavia_porcellus
ENSSSCG00000005366	NCBP1	100	99.620	ENSCCAG00000032297	NCBP1	100	99.620	Cebus_capucinus
ENSSSCG00000005366	NCBP1	100	99.494	ENSCATG00000010052	NCBP1	100	99.494	Cercocebus_atys
ENSSSCG00000005366	NCBP1	100	99.494	ENSCLAG00000014339	NCBP1	100	99.494	Chinchilla_lanigera
ENSSSCG00000005366	NCBP1	100	99.494	ENSCSAG00000010929	NCBP1	100	99.494	Chlorocebus_sabaeus
ENSSSCG00000005366	NCBP1	91	97.458	ENSCHOG00000010332	NCBP1	91	97.458	Choloepus_hoffmanni
ENSSSCG00000005366	NCBP1	100	86.038	ENSCPBG00000024344	NCBP1	99	90.417	Chrysemys_picta_bellii
ENSSSCG00000005366	NCBP1	99	54.235	ENSCING00000008990	-	99	54.109	Ciona_intestinalis
ENSSSCG00000005366	NCBP1	99	53.199	ENSCSAVG00000005300	-	99	53.927	Ciona_savignyi
ENSSSCG00000005366	NCBP1	100	99.494	ENSCANG00000036913	NCBP1	100	99.494	Colobus_angolensis_palliatus
ENSSSCG00000005366	NCBP1	100	98.228	ENSCGRG00001015771	Ncbp1	100	98.228	Cricetulus_griseus_chok1gshd
ENSSSCG00000005366	NCBP1	99	98.333	ENSCGRG00000010311	Ncbp1	100	98.333	Cricetulus_griseus_crigri
ENSSSCG00000005366	NCBP1	99	82.997	ENSCSEG00000012377	NCBP1	99	83.357	Cynoglossus_semilaevis
ENSSSCG00000005366	NCBP1	99	80.881	ENSCVAG00000008795	NCBP1	99	81.509	Cyprinodon_variegatus
ENSSSCG00000005366	NCBP1	100	98.228	ENSDNOG00000006885	NCBP1	100	98.228	Dasypus_novemcinctus
ENSSSCG00000005366	NCBP1	100	93.955	ENSDORG00000013652	Ncbp1	100	93.955	Dipodomys_ordii
ENSSSCG00000005366	NCBP1	100	57.267	FBgn0022942	Cbp80	100	57.750	Drosophila_melanogaster
ENSSSCG00000005366	NCBP1	84	34.018	FBgn0038887	CG7907	87	34.018	Drosophila_melanogaster
ENSSSCG00000005366	NCBP1	89	93.668	ENSETEG00000009705	NCBP1	89	93.668	Echinops_telfairi
ENSSSCG00000005366	NCBP1	100	73.459	ENSEBUG00000008386	NCBP1	100	73.208	Eptatretus_burgeri
ENSSSCG00000005366	NCBP1	100	99.241	ENSEASG00005022795	NCBP1	100	99.241	Equus_asinus_asinus
ENSSSCG00000005366	NCBP1	100	99.367	ENSECAG00000013847	NCBP1	100	99.367	Equus_caballus
ENSSSCG00000005366	NCBP1	95	94.024	ENSEEUG00000015973	NCBP1	99	93.625	Erinaceus_europaeus
ENSSSCG00000005366	NCBP1	99	81.006	ENSELUG00000022519	NCBP1	99	81.761	Esox_lucius
ENSSSCG00000005366	NCBP1	100	99.620	ENSFCAG00000001206	NCBP1	100	99.620	Felis_catus
ENSSSCG00000005366	NCBP1	98	89.186	ENSFALG00000001193	NCBP1	100	89.313	Ficedula_albicollis
ENSSSCG00000005366	NCBP1	100	99.241	ENSFDAG00000010864	NCBP1	100	99.241	Fukomys_damarensis
ENSSSCG00000005366	NCBP1	99	82.390	ENSFHEG00000000655	NCBP1	99	81.887	Fundulus_heteroclitus
ENSSSCG00000005366	NCBP1	99	79.623	ENSGMOG00000008653	NCBP1	99	79.623	Gadus_morhua
ENSSSCG00000005366	NCBP1	98	90.372	ENSGALG00000002087	NCBP1	100	90.038	Gallus_gallus
ENSSSCG00000005366	NCBP1	99	82.890	ENSGAFG00000017787	NCBP1	99	82.763	Gambusia_affinis
ENSSSCG00000005366	NCBP1	99	82.183	ENSGACG00000016772	NCBP1	98	81.807	Gasterosteus_aculeatus
ENSSSCG00000005366	NCBP1	100	88.553	ENSGAGG00000019483	NCBP1	99	90.139	Gopherus_agassizii
ENSSSCG00000005366	NCBP1	100	99.494	ENSGGOG00000001376	NCBP1	100	99.494	Gorilla_gorilla
ENSSSCG00000005366	NCBP1	99	82.872	ENSHBUG00000020843	NCBP1	99	82.494	Haplochromis_burtoni
ENSSSCG00000005366	NCBP1	100	99.367	ENSHGLG00000001882	NCBP1	100	99.367	Heterocephalus_glaber_female
ENSSSCG00000005366	NCBP1	100	86.616	ENSHGLG00000018112	-	100	86.616	Heterocephalus_glaber_female
ENSSSCG00000005366	NCBP1	100	86.364	ENSHGLG00100017373	-	100	86.364	Heterocephalus_glaber_male
ENSSSCG00000005366	NCBP1	100	99.367	ENSHGLG00100013014	NCBP1	100	99.367	Heterocephalus_glaber_male
ENSSSCG00000005366	NCBP1	79	72.381	ENSHCOG00000000204	NCBP1	92	72.381	Hippocampus_comes
ENSSSCG00000005366	NCBP1	99	82.264	ENSIPUG00000007275	ncbp1	99	81.887	Ictalurus_punctatus
ENSSSCG00000005366	NCBP1	100	99.241	ENSSTOG00000002695	NCBP1	100	99.241	Ictidomys_tridecemlineatus
ENSSSCG00000005366	NCBP1	99	82.242	ENSKMAG00000003594	NCBP1	99	86.382	Kryptolebias_marmoratus
ENSSSCG00000005366	NCBP1	99	81.242	ENSLBEG00000011661	NCBP1	99	80.745	Labrus_bergylta
ENSSSCG00000005366	NCBP1	100	80.348	ENSLACG00000013955	NCBP1	100	79.851	Latimeria_chalumnae
ENSSSCG00000005366	NCBP1	99	72.319	ENSLOCG00000009579	NCBP1	99	72.319	Lepisosteus_oculatus
ENSSSCG00000005366	NCBP1	100	98.734	ENSLAFG00000005999	NCBP1	100	98.734	Loxodonta_africana
ENSSSCG00000005366	NCBP1	100	99.494	ENSMFAG00000030994	NCBP1	100	99.494	Macaca_fascicularis
ENSSSCG00000005366	NCBP1	99	99.487	ENSMMUG00000012281	NCBP1	99	99.487	Macaca_mulatta
ENSSSCG00000005366	NCBP1	100	99.494	ENSMNEG00000042790	NCBP1	100	99.494	Macaca_nemestrina
ENSSSCG00000005366	NCBP1	100	99.494	ENSMLEG00000030374	NCBP1	100	99.494	Mandrillus_leucophaeus
ENSSSCG00000005366	NCBP1	99	83.375	ENSMAMG00000014806	NCBP1	99	82.872	Mastacembelus_armatus
ENSSSCG00000005366	NCBP1	99	82.872	ENSMZEG00005003469	NCBP1	99	82.494	Maylandia_zebra
ENSSSCG00000005366	NCBP1	97	82.682	ENSMZEG00005009290	-	99	82.552	Maylandia_zebra
ENSSSCG00000005366	NCBP1	99	97.583	ENSMAUG00000020583	Ncbp1	99	97.583	Mesocricetus_auratus
ENSSSCG00000005366	NCBP1	100	99.114	ENSMICG00000012682	NCBP1	100	99.114	Microcebus_murinus
ENSSSCG00000005366	NCBP1	100	97.848	ENSMOCG00000015818	Ncbp1	100	97.848	Microtus_ochrogaster
ENSSSCG00000005366	NCBP1	91	82.378	ENSMMOG00000002610	NCBP1	99	82.238	Mola_mola
ENSSSCG00000005366	NCBP1	100	93.671	ENSMODG00000003202	NCBP1	99	93.418	Monodelphis_domestica
ENSSSCG00000005366	NCBP1	99	82.746	ENSMALG00000003547	NCBP1	99	82.242	Monopterus_albus
ENSSSCG00000005366	NCBP1	100	97.848	MGP_CAROLIEiJ_G0025982	Ncbp1	100	97.848	Mus_caroli
ENSSSCG00000005366	NCBP1	100	97.848	ENSMUSG00000028330	Ncbp1	100	97.848	Mus_musculus
ENSSSCG00000005366	NCBP1	100	98.101	MGP_PahariEiJ_G0028318	Ncbp1	100	98.101	Mus_pahari
ENSSSCG00000005366	NCBP1	100	97.848	MGP_SPRETEiJ_G0026945	Ncbp1	100	97.848	Mus_spretus
ENSSSCG00000005366	NCBP1	100	99.620	ENSMPUG00000006399	NCBP1	100	99.620	Mustela_putorius_furo
ENSSSCG00000005366	NCBP1	99	97.946	ENSMLUG00000015201	NCBP1	100	97.946	Myotis_lucifugus
ENSSSCG00000005366	NCBP1	100	98.101	ENSNGAG00000014101	Ncbp1	100	98.101	Nannospalax_galili
ENSSSCG00000005366	NCBP1	76	86.344	ENSNBRG00000014674	NCBP1	97	86.344	Neolamprologus_brichardi
ENSSSCG00000005366	NCBP1	100	99.494	ENSNLEG00000016909	NCBP1	100	99.494	Nomascus_leucogenys
ENSSSCG00000005366	NCBP1	89	95.045	ENSMEUG00000010672	NCBP1	90	92.793	Notamacropus_eugenii
ENSSSCG00000005366	NCBP1	84	92.373	ENSOPRG00000002144	-	88	92.373	Ochotona_princeps
ENSSSCG00000005366	NCBP1	100	99.241	ENSODEG00000003232	NCBP1	100	99.241	Octodon_degus
ENSSSCG00000005366	NCBP1	99	82.872	ENSONIG00000001502	NCBP1	99	82.494	Oreochromis_niloticus
ENSSSCG00000005366	NCBP1	79	95.345	ENSOANG00000001918	NCBP1	100	95.345	Ornithorhynchus_anatinus
ENSSSCG00000005366	NCBP1	98	98.458	ENSOCUG00000013853	NCBP1	97	98.458	Oryctolagus_cuniculus
ENSSSCG00000005366	NCBP1	99	81.203	ENSORLG00000011008	NCBP1	99	80.827	Oryzias_latipes
ENSSSCG00000005366	NCBP1	99	81.203	ENSORLG00020017455	NCBP1	99	80.827	Oryzias_latipes_hni
ENSSSCG00000005366	NCBP1	99	81.328	ENSORLG00015012127	NCBP1	99	80.952	Oryzias_latipes_hsok
ENSSSCG00000005366	NCBP1	99	82.080	ENSOMEG00000020698	NCBP1	99	81.955	Oryzias_melastigma
ENSSSCG00000005366	NCBP1	100	99.369	ENSOGAG00000013888	NCBP1	100	99.369	Otolemur_garnettii
ENSSSCG00000005366	NCBP1	100	98.987	ENSOARG00000011233	NCBP1	100	98.987	Ovis_aries
ENSSSCG00000005366	NCBP1	100	99.494	ENSPPAG00000026462	NCBP1	100	99.494	Pan_paniscus
ENSSSCG00000005366	NCBP1	100	99.747	ENSPPRG00000022574	NCBP1	100	99.747	Panthera_pardus
ENSSSCG00000005366	NCBP1	100	99.747	ENSPTIG00000018507	NCBP1	100	99.747	Panthera_tigris_altaica
ENSSSCG00000005366	NCBP1	100	99.494	ENSPTRG00000021167	NCBP1	100	99.494	Pan_troglodytes
ENSSSCG00000005366	NCBP1	100	99.494	ENSPANG00000025591	NCBP1	100	99.494	Papio_anubis
ENSSSCG00000005366	NCBP1	100	81.258	ENSPKIG00000015861	NCBP1	100	81.132	Paramormyrops_kingsleyae
ENSSSCG00000005366	NCBP1	64	89.258	ENSPSIG00000009558	NCBP1	100	89.453	Pelodiscus_sinensis
ENSSSCG00000005366	NCBP1	99	79.723	ENSPMGG00000020476	NCBP1	99	79.219	Periophthalmus_magnuspinnatus
ENSSSCG00000005366	NCBP1	100	97.722	ENSPEMG00000020105	Ncbp1	100	97.722	Peromyscus_maniculatus_bairdii
ENSSSCG00000005366	NCBP1	100	67.621	ENSPMAG00000005533	NCBP1	100	67.621	Petromyzon_marinus
ENSSSCG00000005366	NCBP1	100	93.418	ENSPCIG00000015800	NCBP1	99	94.512	Phascolarctos_cinereus
ENSSSCG00000005366	NCBP1	99	82.080	ENSPFOG00000004158	NCBP1	99	81.704	Poecilia_formosa
ENSSSCG00000005366	NCBP1	99	82.516	ENSPLAG00000020002	NCBP1	99	82.138	Poecilia_latipinna
ENSSSCG00000005366	NCBP1	99	82.516	ENSPMEG00000019821	NCBP1	99	82.138	Poecilia_mexicana
ENSSSCG00000005366	NCBP1	99	82.412	ENSPREG00000006035	NCBP1	99	82.035	Poecilia_reticulata
ENSSSCG00000005366	NCBP1	100	99.494	ENSPPYG00000019426	NCBP1	100	99.494	Pongo_abelii
ENSSSCG00000005366	NCBP1	90	90.030	ENSPCAG00000009943	NCBP1	90	90.030	Procavia_capensis
ENSSSCG00000005366	NCBP1	82	99.187	ENSPCOG00000020024	NCBP1	98	99.187	Propithecus_coquereli
ENSSSCG00000005366	NCBP1	100	99.114	ENSPVAG00000005924	NCBP1	100	99.114	Pteropus_vampyrus
ENSSSCG00000005366	NCBP1	91	82.821	ENSPNYG00000002140	NCBP1	99	82.682	Pundamilia_nyererei
ENSSSCG00000005366	NCBP1	99	82.412	ENSPNAG00000027753	NCBP1	99	81.784	Pygocentrus_nattereri
ENSSSCG00000005366	NCBP1	100	97.975	ENSRNOG00000023605	Ncbp1	100	97.975	Rattus_norvegicus
ENSSSCG00000005366	NCBP1	100	99.494	ENSRBIG00000043175	NCBP1	100	99.494	Rhinopithecus_bieti
ENSSSCG00000005366	NCBP1	100	99.494	ENSRROG00000029767	NCBP1	100	99.494	Rhinopithecus_roxellana
ENSSSCG00000005366	NCBP1	100	99.620	ENSSBOG00000019378	NCBP1	100	99.620	Saimiri_boliviensis_boliviensis
ENSSSCG00000005366	NCBP1	99	62.264	ENSSHAG00000015882	NCBP1	99	60.794	Sarcophilus_harrisii
ENSSSCG00000005366	NCBP1	99	81.643	ENSSFOG00015001872	NCBP1	100	80.886	Scleropages_formosus
ENSSSCG00000005366	NCBP1	99	81.864	ENSSMAG00000007463	NCBP1	99	81.612	Scophthalmus_maximus
ENSSSCG00000005366	NCBP1	99	83.270	ENSSDUG00000007019	NCBP1	100	82.853	Seriola_dumerili
ENSSSCG00000005366	NCBP1	99	82.997	ENSSLDG00000021924	NCBP1	99	82.620	Seriola_lalandi_dorsalis
ENSSSCG00000005366	NCBP1	85	90.611	ENSSARG00000007274	NCBP1	87	90.611	Sorex_araneus
ENSSSCG00000005366	NCBP1	100	82.152	ENSSPUG00000008609	NCBP1	100	82.152	Sphenodon_punctatus
ENSSSCG00000005366	NCBP1	99	83.501	ENSSPAG00000012550	NCBP1	99	83.123	Stegastes_partitus
ENSSSCG00000005366	NCBP1	100	83.648	ENSTGUG00000001472	NCBP1	100	83.774	Taeniopygia_guttata
ENSSSCG00000005366	NCBP1	99	81.990	ENSTRUG00000005287	NCBP1	99	81.612	Takifugu_rubripes
ENSSSCG00000005366	NCBP1	100	95.823	ENSTBEG00000004035	NCBP1	100	95.823	Tupaia_belangeri
ENSSSCG00000005366	NCBP1	88	99.507	ENSTTRG00000000507	NCBP1	88	99.507	Tursiops_truncatus
ENSSSCG00000005366	NCBP1	100	99.620	ENSUAMG00000005471	NCBP1	100	99.620	Ursus_americanus
ENSSSCG00000005366	NCBP1	97	97.269	ENSUMAG00000011865	NCBP1	100	99.707	Ursus_maritimus
ENSSSCG00000005366	NCBP1	100	95.316	ENSVPAG00000010537	NCBP1	100	95.316	Vicugna_pacos
ENSSSCG00000005366	NCBP1	100	99.747	ENSVVUG00000019725	NCBP1	100	99.747	Vulpes_vulpes
ENSSSCG00000005366	NCBP1	100	81.416	ENSXETG00000010179	ncbp1	100	81.416	Xenopus_tropicalis
ENSSSCG00000005366	NCBP1	99	82.642	ENSXMAG00000018253	NCBP1	99	82.264	Xiphophorus_maculatus