EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000005703 (Gene tree)
Gene ID: 100522920
Gene Symbol: PRDM12
Alias: PFM9
Full Name: PR/SET domain 12
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 15589 bases
Position: chr1:270723880-270739468
Accession: 100522920
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000006110	zf-C2H2	PF00096.26	1.4e-12	1	2
ENSSSCP00000006110	zf-C2H2	PF00096.26	1.4e-12	2	2
ENSSSCP00000006110	zf-met	PF12874.7	1.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000006272	PRDM12-201	1095	XM_003122237	ENSSSCP00000006110	364 (aa)	XP_003122285	F1S0X7

Gene Model

Click here to download ENSSSCG00000005703's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000005703's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000005703	PRDM12	100	98.365	ENSG00000130711	PRDM12	100	98.365	Homo_sapiens
ENSSSCG00000005703	PRDM12	99	62.963	ENSAPOG00000018234	-	93	66.860	Acanthochromis_polyacanthus
ENSSSCG00000005703	PRDM12	99	75.000	ENSAPOG00000016051	prdm12b	90	80.580	Acanthochromis_polyacanthus
ENSSSCG00000005703	PRDM12	89	95.046	ENSAMEG00000016234	PRDM12	99	95.046	Ailuropoda_melanoleuca
ENSSSCG00000005703	PRDM12	99	75.648	ENSACIG00000005193	-	91	80.290	Amphilophus_citrinellus
ENSSSCG00000005703	PRDM12	91	79.827	ENSACIG00000019578	prdm12b	93	79.943	Amphilophus_citrinellus
ENSSSCG00000005703	PRDM12	99	76.316	ENSAOCG00000015040	prdm12b	92	80.286	Amphiprion_ocellaris
ENSSSCG00000005703	PRDM12	99	76.923	ENSAPEG00000015092	prdm12b	92	80.980	Amphiprion_percula
ENSSSCG00000005703	PRDM12	100	72.135	ENSAPEG00000022849	-	89	78.363	Amphiprion_percula
ENSSSCG00000005703	PRDM12	99	75.065	ENSATEG00000014595	-	96	82.371	Anabas_testudineus
ENSSSCG00000005703	PRDM12	93	99.412	ENSANAG00000020616	PRDM12	100	99.412	Aotus_nancymaae
ENSSSCG00000005703	PRDM12	99	78.202	ENSACLG00000011876	prdm12b	92	82.440	Astatotilapia_calliptera
ENSSSCG00000005703	PRDM12	89	81.579	ENSACLG00000007631	-	87	81.579	Astatotilapia_calliptera
ENSSSCG00000005703	PRDM12	99	78.788	ENSAMXG00000008540	PRDM12	90	84.356	Astyanax_mexicanus
ENSSSCG00000005703	PRDM12	99	82.703	ENSAMXG00000033665	prdm12b	90	88.623	Astyanax_mexicanus
ENSSSCG00000005703	PRDM12	100	98.901	ENSBTAG00000023797	PRDM12	100	98.901	Bos_taurus
ENSSSCG00000005703	PRDM12	100	98.352	ENSCJAG00000020540	PRDM12	100	98.352	Callithrix_jacchus
ENSSSCG00000005703	PRDM12	88	99.065	ENSCAFG00000023076	PRDM12	99	99.065	Canis_familiaris
ENSSSCG00000005703	PRDM12	100	100.000	ENSCAFG00020024046	PRDM12	100	100.000	Canis_lupus_dingo
ENSSSCG00000005703	PRDM12	100	99.451	ENSCHIG00000025005	PRDM12	100	99.451	Capra_hircus
ENSSSCG00000005703	PRDM12	93	92.353	ENSCPOG00000005901	PRDM12	95	98.083	Cavia_porcellus
ENSSSCG00000005703	PRDM12	100	99.176	ENSCCAG00000037485	PRDM12	100	99.176	Cebus_capucinus
ENSSSCG00000005703	PRDM12	100	99.176	ENSCATG00000020327	PRDM12	100	99.176	Cercocebus_atys
ENSSSCG00000005703	PRDM12	92	97.904	ENSCLAG00000005499	PRDM12	92	97.904	Chinchilla_lanigera
ENSSSCG00000005703	PRDM12	100	99.451	ENSCSAG00000014756	PRDM12	100	99.451	Chlorocebus_sabaeus
ENSSSCG00000005703	PRDM12	100	89.560	ENSCPBG00000022628	PRDM12	94	93.413	Chrysemys_picta_bellii
ENSSSCG00000005703	PRDM12	100	98.634	ENSCGRG00001015005	Prdm12	100	98.634	Cricetulus_griseus_chok1gshd
ENSSSCG00000005703	PRDM12	99	72.564	ENSCVAG00000000944	-	90	77.778	Cyprinodon_variegatus
ENSSSCG00000005703	PRDM12	99	77.212	ENSCVAG00000017166	prdm12b	92	82.111	Cyprinodon_variegatus
ENSSSCG00000005703	PRDM12	99	81.383	ENSDARG00000007430	prdm12b	93	86.257	Danio_rerio
ENSSSCG00000005703	PRDM12	99	98.352	ENSDNOG00000042302	PRDM12	99	98.352	Dasypus_novemcinctus
ENSSSCG00000005703	PRDM12	89	62.678	ENSEBUG00000016780	prdm12b	78	64.103	Eptatretus_burgeri
ENSSSCG00000005703	PRDM12	100	98.901	ENSEASG00005008472	PRDM12	100	98.901	Equus_asinus_asinus
ENSSSCG00000005703	PRDM12	100	98.626	ENSECAG00000005933	PRDM12	100	98.626	Equus_caballus
ENSSSCG00000005703	PRDM12	99	80.106	ENSELUG00000009905	prdm12b	91	85.417	Esox_lucius
ENSSSCG00000005703	PRDM12	99	76.294	ENSELUG00000013674	PRDM12	89	83.333	Esox_lucius
ENSSSCG00000005703	PRDM12	100	99.725	ENSFCAG00000043086	PRDM12	100	99.725	Felis_catus
ENSSSCG00000005703	PRDM12	100	89.835	ENSFALG00000001445	PRDM12	84	93.713	Ficedula_albicollis
ENSSSCG00000005703	PRDM12	99	77.128	ENSFHEG00000003944	prdm12b	92	81.686	Fundulus_heteroclitus
ENSSSCG00000005703	PRDM12	99	73.846	ENSFHEG00000007746	-	88	80.236	Fundulus_heteroclitus
ENSSSCG00000005703	PRDM12	91	82.282	ENSGMOG00000011797	prdm12b	94	82.282	Gadus_morhua
ENSSSCG00000005703	PRDM12	100	89.835	ENSGALG00000003895	PRDM12	94	93.713	Gallus_gallus
ENSSSCG00000005703	PRDM12	100	77.333	ENSGAFG00000010827	prdm12b	90	82.596	Gambusia_affinis
ENSSSCG00000005703	PRDM12	100	78.284	ENSGACG00000016713	prdm12b	91	83.432	Gasterosteus_aculeatus
ENSSSCG00000005703	PRDM12	100	89.835	ENSGAGG00000014083	PRDM12	94	93.713	Gopherus_agassizii
ENSSSCG00000005703	PRDM12	100	98.361	ENSGGOG00000010568	PRDM12	100	98.361	Gorilla_gorilla
ENSSSCG00000005703	PRDM12	89	81.579	ENSHBUG00000022537	-	80	81.579	Haplochromis_burtoni
ENSSSCG00000005703	PRDM12	99	76.720	ENSHBUG00000022878	prdm12b	93	80.692	Haplochromis_burtoni
ENSSSCG00000005703	PRDM12	100	96.986	ENSHGLG00000013939	PRDM12	100	96.986	Heterocephalus_glaber_female
ENSSSCG00000005703	PRDM12	99	72.973	ENSHCOG00000021167	-	95	76.176	Hippocampus_comes
ENSSSCG00000005703	PRDM12	89	81.287	ENSHCOG00000003663	prdm12b	89	80.516	Hippocampus_comes
ENSSSCG00000005703	PRDM12	99	82.038	ENSIPUG00000017053	prdm12b	91	87.425	Ictalurus_punctatus
ENSSSCG00000005703	PRDM12	99	76.022	ENSIPUG00000019544	PRDM12	90	82.317	Ictalurus_punctatus
ENSSSCG00000005703	PRDM12	99	95.028	ENSSTOG00000005986	PRDM12	87	99.401	Ictidomys_tridecemlineatus
ENSSSCG00000005703	PRDM12	91	99.091	ENSJJAG00000005424	Prdm12	100	99.091	Jaculus_jaculus
ENSSSCG00000005703	PRDM12	99	76.022	ENSKMAG00000021205	-	92	81.651	Kryptolebias_marmoratus
ENSSSCG00000005703	PRDM12	90	78.492	ENSKMAG00000016921	prdm12b	89	78.771	Kryptolebias_marmoratus
ENSSSCG00000005703	PRDM12	99	76.720	ENSLBEG00000017769	prdm12b	88	84.132	Labrus_bergylta
ENSSSCG00000005703	PRDM12	99	74.870	ENSLBEG00000007776	-	89	81.602	Labrus_bergylta
ENSSSCG00000005703	PRDM12	99	86.777	ENSLACG00000017560	PRDM12	94	90.390	Latimeria_chalumnae
ENSSSCG00000005703	PRDM12	99	81.572	ENSLOCG00000005429	prdm12b	93	86.726	Lepisosteus_oculatus
ENSSSCG00000005703	PRDM12	99	94.624	ENSLAFG00000006979	PRDM12	99	94.624	Loxodonta_africana
ENSSSCG00000005703	PRDM12	100	96.730	ENSMFAG00000040322	PRDM12	100	96.730	Macaca_fascicularis
ENSSSCG00000005703	PRDM12	100	99.176	ENSMNEG00000037234	PRDM12	100	99.176	Macaca_nemestrina
ENSSSCG00000005703	PRDM12	99	76.240	ENSMAMG00000013212	prdm12b	90	83.383	Mastacembelus_armatus
ENSSSCG00000005703	PRDM12	89	81.250	ENSMAMG00000018988	-	86	81.250	Mastacembelus_armatus
ENSSSCG00000005703	PRDM12	89	81.579	ENSMZEG00005000415	PRDM12	86	81.579	Maylandia_zebra
ENSSSCG00000005703	PRDM12	94	93.548	ENSMGAG00000005438	PRDM12	94	93.713	Meleagris_gallopavo
ENSSSCG00000005703	PRDM12	100	96.986	ENSMAUG00000013040	Prdm12	100	96.986	Mesocricetus_auratus
ENSSSCG00000005703	PRDM12	100	98.352	ENSMICG00000015480	PRDM12	100	98.352	Microcebus_murinus
ENSSSCG00000005703	PRDM12	99	95.265	ENSMOCG00000021026	Prdm12	93	98.830	Microtus_ochrogaster
ENSSSCG00000005703	PRDM12	100	91.758	ENSMODG00000012108	PRDM12	94	95.808	Monodelphis_domestica
ENSSSCG00000005703	PRDM12	99	66.398	ENSMALG00000021901	prdm12b	88	71.171	Monopterus_albus
ENSSSCG00000005703	PRDM12	100	98.630	MGP_CAROLIEiJ_G0023414	Prdm12	100	98.630	Mus_caroli
ENSSSCG00000005703	PRDM12	100	98.630	ENSMUSG00000079466	Prdm12	100	98.630	Mus_musculus
ENSSSCG00000005703	PRDM12	100	98.630	MGP_PahariEiJ_G0024871	Prdm12	100	98.630	Mus_pahari
ENSSSCG00000005703	PRDM12	100	98.630	MGP_SPRETEiJ_G0024331	Prdm12	100	98.630	Mus_spretus
ENSSSCG00000005703	PRDM12	100	95.055	ENSNGAG00000018480	Prdm12	100	95.055	Nannospalax_galili
ENSSSCG00000005703	PRDM12	99	72.460	ENSNBRG00000024312	-	95	76.608	Neolamprologus_brichardi
ENSSSCG00000005703	PRDM12	99	75.526	ENSNBRG00000006727	prdm12b	93	80.000	Neolamprologus_brichardi
ENSSSCG00000005703	PRDM12	100	81.593	ENSMEUG00000003828	PRDM12	94	84.731	Notamacropus_eugenii
ENSSSCG00000005703	PRDM12	91	98.788	ENSOPRG00000008680	PRDM12	100	98.788	Ochotona_princeps
ENSSSCG00000005703	PRDM12	94	98.251	ENSODEG00000016282	PRDM12	64	98.251	Octodon_degus
ENSSSCG00000005703	PRDM12	62	89.868	ENSOANG00000001043	PRDM12	91	96.954	Ornithorhynchus_anatinus
ENSSSCG00000005703	PRDM12	86	93.610	ENSOCUG00000008241	PRDM12	98	94.754	Oryctolagus_cuniculus
ENSSSCG00000005703	PRDM12	89	79.765	ENSORLG00000017558	-	87	80.352	Oryzias_latipes
ENSSSCG00000005703	PRDM12	100	76.178	ENSORLG00000007114	prdm12b	92	80.980	Oryzias_latipes
ENSSSCG00000005703	PRDM12	100	75.591	ENSORLG00020019565	prdm12b	91	80.692	Oryzias_latipes_hni
ENSSSCG00000005703	PRDM12	89	79.532	ENSORLG00020013167	-	87	80.117	Oryzias_latipes_hni
ENSSSCG00000005703	PRDM12	89	79.765	ENSORLG00015003435	-	87	80.352	Oryzias_latipes_hsok
ENSSSCG00000005703	PRDM12	91	80.403	ENSORLG00015007621	prdm12b	92	80.747	Oryzias_latipes_hsok
ENSSSCG00000005703	PRDM12	99	73.834	ENSOMEG00000007762	-	94	78.632	Oryzias_melastigma
ENSSSCG00000005703	PRDM12	99	75.789	ENSOMEG00000004134	prdm12b	91	80.286	Oryzias_melastigma
ENSSSCG00000005703	PRDM12	91	100.000	ENSOGAG00000007557	PRDM12	100	100.000	Otolemur_garnettii
ENSSSCG00000005703	PRDM12	79	98.606	ENSPPAG00000031506	-	97	98.606	Pan_paniscus
ENSSSCG00000005703	PRDM12	100	87.397	ENSPPRG00000023024	PRDM12	92	87.397	Panthera_pardus
ENSSSCG00000005703	PRDM12	100	98.634	ENSPTRG00000043324	-	100	98.634	Pan_troglodytes
ENSSSCG00000005703	PRDM12	100	98.634	ENSPTRG00000021475	PRDM12	100	98.634	Pan_troglodytes
ENSSSCG00000005703	PRDM12	100	99.176	ENSPANG00000025967	PRDM12	100	99.176	Papio_anubis
ENSSSCG00000005703	PRDM12	94	78.348	ENSPKIG00000004305	PRDM12	94	80.539	Paramormyrops_kingsleyae
ENSSSCG00000005703	PRDM12	99	80.688	ENSPKIG00000007228	prdm12b	94	85.632	Paramormyrops_kingsleyae
ENSSSCG00000005703	PRDM12	100	89.011	ENSPSIG00000006739	PRDM12	94	92.814	Pelodiscus_sinensis
ENSSSCG00000005703	PRDM12	99	73.368	ENSPMGG00000002356	-	88	80.655	Periophthalmus_magnuspinnatus
ENSSSCG00000005703	PRDM12	100	77.480	ENSPMGG00000008867	prdm12b	92	82.507	Periophthalmus_magnuspinnatus
ENSSSCG00000005703	PRDM12	95	95.965	ENSPEMG00000009969	Prdm12	91	99.096	Peromyscus_maniculatus_bairdii
ENSSSCG00000005703	PRDM12	100	92.033	ENSPCIG00000024119	PRDM12	94	96.108	Phascolarctos_cinereus
ENSSSCG00000005703	PRDM12	99	77.867	ENSPFOG00000019841	prdm12b	93	82.216	Poecilia_formosa
ENSSSCG00000005703	PRDM12	90	83.333	ENSPLAG00000016626	prdm12b	90	82.891	Poecilia_latipinna
ENSSSCG00000005703	PRDM12	97	76.902	ENSPMEG00000016698	prdm12b	89	82.371	Poecilia_mexicana
ENSSSCG00000005703	PRDM12	96	73.481	ENSPREG00000003211	-	90	77.982	Poecilia_reticulata
ENSSSCG00000005703	PRDM12	100	77.225	ENSPREG00000015073	prdm12b	89	82.749	Poecilia_reticulata
ENSSSCG00000005703	PRDM12	96	97.151	ENSPPYG00000019694	PRDM12	100	97.151	Pongo_abelii
ENSSSCG00000005703	PRDM12	100	99.180	ENSPCOG00000022255	PRDM12	100	99.180	Propithecus_coquereli
ENSSSCG00000005703	PRDM12	100	98.361	ENSPVAG00000001511	PRDM12	100	98.361	Pteropus_vampyrus
ENSSSCG00000005703	PRDM12	89	81.579	ENSPNYG00000013589	-	86	81.579	Pundamilia_nyererei
ENSSSCG00000005703	PRDM12	99	76.053	ENSPNYG00000009607	prdm12b	93	79.943	Pundamilia_nyererei
ENSSSCG00000005703	PRDM12	99	82.574	ENSPNAG00000024532	prdm12b	91	88.922	Pygocentrus_nattereri
ENSSSCG00000005703	PRDM12	99	74.731	ENSPNAG00000013396	PRDM12	88	80.547	Pygocentrus_nattereri
ENSSSCG00000005703	PRDM12	100	98.630	ENSRNOG00000009218	Prdm12	100	98.630	Rattus_norvegicus
ENSSSCG00000005703	PRDM12	87	99.369	ENSRBIG00000042712	PRDM12	91	96.960	Rhinopithecus_bieti
ENSSSCG00000005703	PRDM12	88	99.377	ENSRROG00000043554	PRDM12	100	99.377	Rhinopithecus_roxellana
ENSSSCG00000005703	PRDM12	100	91.233	ENSSHAG00000015972	PRDM12	94	95.224	Sarcophilus_harrisii
ENSSSCG00000005703	PRDM12	99	74.293	ENSSMAG00000003754	prdm12b	90	80.342	Scophthalmus_maximus
ENSSSCG00000005703	PRDM12	93	81.395	ENSSDUG00000019071	-	90	83.486	Seriola_dumerili
ENSSSCG00000005703	PRDM12	99	75.584	ENSSDUG00000023498	prdm12b	90	81.214	Seriola_dumerili
ENSSSCG00000005703	PRDM12	99	78.415	ENSSLDG00000013562	-	93	84.356	Seriola_lalandi_dorsalis
ENSSSCG00000005703	PRDM12	99	75.916	ENSSLDG00000009557	prdm12b	90	81.924	Seriola_lalandi_dorsalis
ENSSSCG00000005703	PRDM12	100	89.286	ENSSPUG00000013424	PRDM12	94	93.114	Sphenodon_punctatus
ENSSSCG00000005703	PRDM12	99	65.803	ENSSPAG00000022420	-	87	74.769	Stegastes_partitus
ENSSSCG00000005703	PRDM12	99	76.115	ENSSPAG00000018824	prdm12b	90	81.871	Stegastes_partitus
ENSSSCG00000005703	PRDM12	99	77.249	ENSTRUG00000018659	prdm12b	92	82.405	Takifugu_rubripes
ENSSSCG00000005703	PRDM12	99	75.472	ENSTRUG00000013239	-	93	81.627	Takifugu_rubripes
ENSSSCG00000005703	PRDM12	99	75.610	ENSTNIG00000005859	-	92	80.909	Tetraodon_nigroviridis
ENSSSCG00000005703	PRDM12	99	77.573	ENSTNIG00000009020	prdm12b	91	83.481	Tetraodon_nigroviridis
ENSSSCG00000005703	PRDM12	96	99.140	ENSUAMG00000009653	PRDM12	97	99.140	Ursus_americanus
ENSSSCG00000005703	PRDM12	91	100.000	ENSVVUG00000027662	PRDM12	79	100.000	Vulpes_vulpes
ENSSSCG00000005703	PRDM12	100	77.748	ENSXCOG00000002836	prdm12b	91	82.596	Xiphophorus_couchianus
ENSSSCG00000005703	PRDM12	99	73.958	ENSXMAG00000028012	-	88	80.294	Xiphophorus_maculatus
ENSSSCG00000005703	PRDM12	99	77.333	ENSXMAG00000005537	prdm12b	91	82.111	Xiphophorus_maculatus