EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000005724 (Gene tree)
Gene ID: 100511239
Gene Symbol: SETX
Alias: ALS4|AOA2|KIAA0625|SCAR1|Sen1
Full Name: senataxin
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 75405 bases
Position: chr1:272095358-272170762
Accession: 100511239
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000041416	SEN1_N	PF12726.7	1.2e-12	1	1
ENSSSCP00000040167	SEN1_N	PF12726.7	1.2e-12	1	1
ENSSSCP00000006132	SEN1_N	PF12726.7	1.3e-12	1	1
ENSSSCP00000058630	SEN1_N	PF12726.7	1.3e-12	1	1
ENSSSCP00000031784	SEN1_N	PF12726.7	2.3e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000042827	SETX-203	8366	XM_021070705	ENSSSCP00000040167	2611 (aa)	XP_020926364	A0A287A8P6
ENSSSCT00000040524	SETX-204	8256	-	ENSSSCP00000041416	2575 (aa)	-	A0A287AC84
ENSSSCT00000006294	SETX-202	8466	-	ENSSSCP00000006132	2661 (aa)	-	F1S0U6
ENSSSCT00000045724	SETX-201	8599	XM_013987041	ENSSSCP00000058630	2661 (aa)	XP_013842495	F1S0U6
ENSSSCT00000043081	SETX-205	8330	XM_021070698	ENSSSCP00000031784	2585 (aa)	XP_020926357	A0A286ZJS3

Gene Model

Click here to download ENSSSCG00000005724's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000005724's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000005724	SETX	99	76.198	ENSG00000107290	SETX	93	86.631	Homo_sapiens
ENSSSCG00000005724	SETX	77	45.787	ENSAMXG00000014406	-	80	51.128	Astyanax_mexicanus
ENSSSCG00000005724	SETX	99	75.390	ENSCJAG00000018245	SETX	99	75.278	Callithrix_jacchus
ENSSSCG00000005724	SETX	99	69.425	ENSCPOG00000001492	SETX	99	69.388	Cavia_porcellus
ENSSSCG00000005724	SETX	99	72.717	ENSCLAG00000012582	SETX	99	72.783	Chinchilla_lanigera
ENSSSCG00000005724	SETX	72	94.030	ENSETEG00000008111	-	72	94.030	Echinops_telfairi
ENSSSCG00000005724	SETX	91	88.210	ENSECAG00000012019	SETX	97	88.210	Equus_caballus
ENSSSCG00000005724	SETX	69	45.331	ENSELUG00000022536	-	71	51.341	Esox_lucius
ENSSSCG00000005724	SETX	99	77.773	ENSFCAG00000007102	SETX	99	77.637	Felis_catus
ENSSSCG00000005724	SETX	77	75.000	ENSFALG00000001464	SETX	86	73.000	Ficedula_albicollis
ENSSSCG00000005724	SETX	99	74.722	ENSGGOG00000027664	SETX	90	89.437	Gorilla_gorilla
ENSSSCG00000005724	SETX	50	50.000	ENSIPUG00000006685	setx	83	50.000	Ictalurus_punctatus
ENSSSCG00000005724	SETX	83	54.633	ENSLOCG00000004264	SETX	88	54.792	Lepisosteus_oculatus
ENSSSCG00000005724	SETX	99	65.284	ENSMOCG00000000848	Setx	99	65.067	Microtus_ochrogaster
ENSSSCG00000005724	SETX	99	68.261	MGP_PahariEiJ_G0024821	Setx	99	68.532	Mus_pahari
ENSSSCG00000005724	SETX	99	74.628	ENSNLEG00000012839	SETX	97	86.429	Nomascus_leucogenys
ENSSSCG00000005724	SETX	98	70.010	ENSOCUG00000005616	SETX	96	69.720	Oryctolagus_cuniculus
ENSSSCG00000005724	SETX	99	76.777	ENSOGAG00000013387	SETX	99	75.706	Otolemur_garnettii
ENSSSCG00000005724	SETX	99	75.900	ENSPPAG00000004108	SETX	90	88.380	Pan_paniscus
ENSSSCG00000005724	SETX	99	77.415	ENSPPRG00000012867	SETX	99	77.340	Panthera_pardus
ENSSSCG00000005724	SETX	99	77.349	ENSPTIG00000021101	SETX	99	77.274	Panthera_tigris_altaica
ENSSSCG00000005724	SETX	99	75.641	ENSPTRG00000021495	SETX	99	75.566	Pan_troglodytes
ENSSSCG00000005724	SETX	86	47.929	ENSPKIG00000025162	SETX	86	54.406	Paramormyrops_kingsleyae
ENSSSCG00000005724	SETX	61	92.857	ENSSARG00000002336	-	63	92.857	Sorex_araneus
ENSSSCG00000005724	SETX	80	73.455	ENSSPUG00000016332	SETX	84	71.770	Sphenodon_punctatus
ENSSSCG00000005724	SETX	78	74.662	ENSTGUG00000005117	SETX	86	72.546	Taeniopygia_guttata
ENSSSCG00000005724	SETX	79	66.224	ENSXETG00000006254	setx	89	64.570	Xenopus_tropicalis