EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000005906 (Gene tree)
Gene ID: 100514403
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 10657 bases
Position: chr4:383004-393660
Accession: 100514403
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000006315	CPSF_A	PF03178.15	7.8e-92	1	1
ENSSSCP00000029546	CPSF_A	PF03178.15	1.1e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000033207	CPSF1-202	4284	-	ENSSSCP00000029546	1427 (aa)	-	K7GNU1
ENSSSCT00000006486	CPSF1-201	4290	XM_021090408	ENSSSCP00000006315	1429 (aa)	XP_020946067	F1RSN8

Gene Model

Click here to download ENSSSCG00000005906's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000005906's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000005906	CPSF1	100	95.920	ENSG00000071894	CPSF1	100	95.920	Homo_sapiens
ENSSSCG00000005906	CPSF1	100	77.193	ENSAPOG00000019621	cpsf1	100	77.058	Acanthochromis_polyacanthus
ENSSSCG00000005906	CPSF1	97	95.139	ENSAMEG00000005557	CPSF1	100	95.139	Ailuropoda_melanoleuca
ENSSSCG00000005906	CPSF1	100	77.263	ENSACIG00000006112	cpsf1	100	77.332	Amphilophus_citrinellus
ENSSSCG00000005906	CPSF1	100	78.321	ENSAOCG00000007120	cpsf1	100	78.183	Amphiprion_ocellaris
ENSSSCG00000005906	CPSF1	100	78.611	ENSAPEG00000005755	cpsf1	100	78.611	Amphiprion_percula
ENSSSCG00000005906	CPSF1	100	76.970	ENSATEG00000011097	cpsf1	100	77.104	Anabas_testudineus
ENSSSCG00000005906	CPSF1	93	81.501	ENSACAG00000009655	CPSF1	100	81.501	Anolis_carolinensis
ENSSSCG00000005906	CPSF1	100	96.055	ENSANAG00000036514	CPSF1	100	96.055	Aotus_nancymaae
ENSSSCG00000005906	CPSF1	100	76.332	ENSACLG00000012231	cpsf1	99	77.856	Astatotilapia_calliptera
ENSSSCG00000005906	CPSF1	100	73.393	ENSAMXG00000008485	cpsf1	100	73.462	Astyanax_mexicanus
ENSSSCG00000005906	CPSF1	100	94.894	ENSBTAG00000008355	CPSF1	100	94.894	Bos_taurus
ENSSSCG00000005906	CPSF1	100	31.402	WBGene00022301	cpsf-1	100	40.169	Caenorhabditis_elegans
ENSSSCG00000005906	CPSF1	100	95.848	ENSCJAG00000021421	CPSF1	100	95.848	Callithrix_jacchus
ENSSSCG00000005906	CPSF1	97	96.567	ENSCAFG00000001600	CPSF1	100	97.561	Canis_familiaris
ENSSSCG00000005906	CPSF1	100	96.814	ENSCAFG00020020821	CPSF1	100	96.814	Canis_lupus_dingo
ENSSSCG00000005906	CPSF1	100	91.310	ENSCHIG00000015833	CPSF1	100	91.310	Capra_hircus
ENSSSCG00000005906	CPSF1	100	96.194	ENSTSYG00000028560	CPSF1	100	96.194	Carlito_syrichta
ENSSSCG00000005906	CPSF1	97	94.273	ENSCAPG00000014921	CPSF1	99	94.384	Cavia_aperea
ENSSSCG00000005906	CPSF1	100	93.910	ENSCPOG00000011448	CPSF1	100	93.910	Cavia_porcellus
ENSSSCG00000005906	CPSF1	100	96.055	ENSCCAG00000037658	CPSF1	100	96.055	Cebus_capucinus
ENSSSCG00000005906	CPSF1	100	95.779	ENSCATG00000037234	CPSF1	100	95.779	Cercocebus_atys
ENSSSCG00000005906	CPSF1	100	95.776	ENSCLAG00000012166	CPSF1	100	95.776	Chinchilla_lanigera
ENSSSCG00000005906	CPSF1	100	95.779	ENSCSAG00000008502	CPSF1	100	95.779	Chlorocebus_sabaeus
ENSSSCG00000005906	CPSF1	99	87.282	ENSCPBG00000018910	CPSF1	96	87.282	Chrysemys_picta_bellii
ENSSSCG00000005906	CPSF1	96	47.418	ENSCING00000000514	-	100	47.274	Ciona_intestinalis
ENSSSCG00000005906	CPSF1	99	47.051	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSSSCG00000005906	CPSF1	99	90.503	ENSCANG00000032760	CPSF1	99	90.503	Colobus_angolensis_palliatus
ENSSSCG00000005906	CPSF1	100	95.291	ENSCGRG00001016344	Cpsf1	100	95.291	Cricetulus_griseus_chok1gshd
ENSSSCG00000005906	CPSF1	100	92.867	ENSCGRG00000003118	Cpsf1	100	92.867	Cricetulus_griseus_crigri
ENSSSCG00000005906	CPSF1	100	76.763	ENSCSEG00000013464	cpsf1	100	76.833	Cynoglossus_semilaevis
ENSSSCG00000005906	CPSF1	87	76.696	ENSCVAG00000014059	cpsf1	100	75.926	Cyprinodon_variegatus
ENSSSCG00000005906	CPSF1	100	78.542	ENSDARG00000034178	cpsf1	100	78.611	Danio_rerio
ENSSSCG00000005906	CPSF1	57	95.942	ENSDNOG00000043654	CPSF1	94	95.942	Dasypus_novemcinctus
ENSSSCG00000005906	CPSF1	97	95.552	ENSDORG00000006278	Cpsf1	99	95.674	Dipodomys_ordii
ENSSSCG00000005906	CPSF1	100	44.400	FBgn0024698	Cpsf160	100	44.258	Drosophila_melanogaster
ENSSSCG00000005906	CPSF1	80	97.987	ENSETEG00000006022	CPSF1	83	97.987	Echinops_telfairi
ENSSSCG00000005906	CPSF1	100	97.368	ENSEASG00005010774	CPSF1	100	97.368	Equus_asinus_asinus
ENSSSCG00000005906	CPSF1	100	97.368	ENSECAG00000022209	CPSF1	100	97.368	Equus_caballus
ENSSSCG00000005906	CPSF1	100	94.533	ENSEEUG00000000471	CPSF1	100	94.533	Erinaceus_europaeus
ENSSSCG00000005906	CPSF1	100	77.839	ENSELUG00000012271	cpsf1	100	77.944	Esox_lucius
ENSSSCG00000005906	CPSF1	100	95.706	ENSFDAG00000016060	CPSF1	100	95.706	Fukomys_damarensis
ENSSSCG00000005906	CPSF1	100	76.272	ENSFHEG00000016801	cpsf1	100	76.341	Fundulus_heteroclitus
ENSSSCG00000005906	CPSF1	100	77.533	ENSGMOG00000000796	cpsf1	100	77.739	Gadus_morhua
ENSSSCG00000005906	CPSF1	95	83.929	ENSGAFG00000018890	cpsf1	100	83.929	Gambusia_affinis
ENSSSCG00000005906	CPSF1	100	78.082	ENSGACG00000008703	cpsf1	100	77.945	Gasterosteus_aculeatus
ENSSSCG00000005906	CPSF1	100	84.008	ENSGAGG00000004276	CPSF1	98	87.322	Gopherus_agassizii
ENSSSCG00000005906	CPSF1	100	96.122	ENSGGOG00000016185	CPSF1	100	96.122	Gorilla_gorilla
ENSSSCG00000005906	CPSF1	100	78.507	ENSHBUG00000018900	cpsf1	100	78.438	Haplochromis_burtoni
ENSSSCG00000005906	CPSF1	100	95.637	ENSHGLG00000016139	CPSF1	100	95.637	Heterocephalus_glaber_female
ENSSSCG00000005906	CPSF1	100	95.568	ENSHGLG00100009750	CPSF1	100	95.568	Heterocephalus_glaber_male
ENSSSCG00000005906	CPSF1	100	76.303	ENSHCOG00000018509	cpsf1	100	76.220	Hippocampus_comes
ENSSSCG00000005906	CPSF1	100	75.668	ENSIPUG00000011259	cpsf1	100	75.668	Ictalurus_punctatus
ENSSSCG00000005906	CPSF1	97	95.578	ENSSTOG00000009957	CPSF1	99	95.578	Ictidomys_tridecemlineatus
ENSSSCG00000005906	CPSF1	100	95.291	ENSJJAG00000023002	Cpsf1	100	95.291	Jaculus_jaculus
ENSSSCG00000005906	CPSF1	91	85.893	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
ENSSSCG00000005906	CPSF1	100	76.689	ENSLBEG00000003601	cpsf1	100	77.079	Labrus_bergylta
ENSSSCG00000005906	CPSF1	88	81.731	ENSLACG00000000233	CPSF1	92	81.731	Latimeria_chalumnae
ENSSSCG00000005906	CPSF1	100	77.610	ENSLOCG00000008484	cpsf1	100	77.610	Lepisosteus_oculatus
ENSSSCG00000005906	CPSF1	97	95.061	ENSLAFG00000022601	CPSF1	100	95.061	Loxodonta_africana
ENSSSCG00000005906	CPSF1	100	95.779	ENSMFAG00000037013	CPSF1	99	96.966	Macaca_fascicularis
ENSSSCG00000005906	CPSF1	100	95.848	ENSMMUG00000007380	CPSF1	100	95.848	Macaca_mulatta
ENSSSCG00000005906	CPSF1	97	95.848	ENSMNEG00000043564	CPSF1	100	95.848	Macaca_nemestrina
ENSSSCG00000005906	CPSF1	100	95.779	ENSMLEG00000043010	CPSF1	100	95.779	Mandrillus_leucophaeus
ENSSSCG00000005906	CPSF1	100	77.297	ENSMAMG00000003803	cpsf1	100	77.665	Mastacembelus_armatus
ENSSSCG00000005906	CPSF1	100	76.471	ENSMZEG00005001168	cpsf1	100	76.401	Maylandia_zebra
ENSSSCG00000005906	CPSF1	100	95.014	ENSMAUG00000003601	Cpsf1	100	95.014	Mesocricetus_auratus
ENSSSCG00000005906	CPSF1	100	96.330	ENSMICG00000015767	CPSF1	100	96.330	Microcebus_murinus
ENSSSCG00000005906	CPSF1	100	95.429	ENSMOCG00000022758	Cpsf1	100	95.429	Microtus_ochrogaster
ENSSSCG00000005906	CPSF1	100	78.008	ENSMMOG00000021245	cpsf1	100	78.077	Mola_mola
ENSSSCG00000005906	CPSF1	100	92.823	ENSMODG00000010755	CPSF1	100	92.823	Monodelphis_domestica
ENSSSCG00000005906	CPSF1	100	76.892	ENSMALG00000020545	cpsf1	100	76.892	Monopterus_albus
ENSSSCG00000005906	CPSF1	100	95.706	MGP_CAROLIEiJ_G0019936	Cpsf1	100	95.706	Mus_caroli
ENSSSCG00000005906	CPSF1	100	95.637	ENSMUSG00000034022	Cpsf1	100	95.637	Mus_musculus
ENSSSCG00000005906	CPSF1	100	95.568	MGP_PahariEiJ_G0019946	Cpsf1	100	95.568	Mus_pahari
ENSSSCG00000005906	CPSF1	100	95.637	MGP_SPRETEiJ_G0020839	Cpsf1	100	95.637	Mus_spretus
ENSSSCG00000005906	CPSF1	93	95.923	ENSMPUG00000006419	CPSF1	93	95.923	Mustela_putorius_furo
ENSSSCG00000005906	CPSF1	100	95.222	ENSNGAG00000022460	Cpsf1	100	95.222	Nannospalax_galili
ENSSSCG00000005906	CPSF1	100	74.033	ENSNBRG00000000813	cpsf1	100	74.102	Neolamprologus_brichardi
ENSSSCG00000005906	CPSF1	86	83.643	ENSNLEG00000010633	-	100	88.426	Nomascus_leucogenys
ENSSSCG00000005906	CPSF1	82	97.093	ENSMEUG00000014922	CPSF1	85	97.093	Notamacropus_eugenii
ENSSSCG00000005906	CPSF1	60	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSSSCG00000005906	CPSF1	100	95.914	ENSODEG00000013995	CPSF1	100	95.914	Octodon_degus
ENSSSCG00000005906	CPSF1	100	78.922	ENSONIG00000007676	cpsf1	100	78.784	Oreochromis_niloticus
ENSSSCG00000005906	CPSF1	58	91.429	ENSOANG00000010716	CPSF1	88	91.429	Ornithorhynchus_anatinus
ENSSSCG00000005906	CPSF1	100	76.866	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSSSCG00000005906	CPSF1	100	77.001	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSSSCG00000005906	CPSF1	100	76.850	ENSORLG00015009979	cpsf1	100	76.918	Oryzias_latipes_hsok
ENSSSCG00000005906	CPSF1	100	76.683	ENSOMEG00000011849	cpsf1	100	76.615	Oryzias_melastigma
ENSSSCG00000005906	CPSF1	100	96.194	ENSOGAG00000000315	CPSF1	100	96.194	Otolemur_garnettii
ENSSSCG00000005906	CPSF1	100	96.125	ENSPPAG00000019280	CPSF1	100	96.125	Pan_paniscus
ENSSSCG00000005906	CPSF1	100	94.490	ENSPTRG00000051253	-	100	94.490	Pan_troglodytes
ENSSSCG00000005906	CPSF1	100	96.125	ENSPTRG00000049288	-	100	96.125	Pan_troglodytes
ENSSSCG00000005906	CPSF1	97	95.705	ENSPANG00000015005	CPSF1	100	95.705	Papio_anubis
ENSSSCG00000005906	CPSF1	100	79.322	ENSPKIG00000002582	cpsf1	100	79.818	Paramormyrops_kingsleyae
ENSSSCG00000005906	CPSF1	100	92.754	ENSPCIG00000009035	CPSF1	100	92.754	Phascolarctos_cinereus
ENSSSCG00000005906	CPSF1	100	75.473	ENSPFOG00000012870	cpsf1	100	75.674	Poecilia_formosa
ENSSSCG00000005906	CPSF1	100	75.625	ENSPREG00000016307	cpsf1	100	75.692	Poecilia_reticulata
ENSSSCG00000005906	CPSF1	100	90.210	ENSPPYG00000018973	CPSF1	100	90.769	Pongo_abelii
ENSSSCG00000005906	CPSF1	91	94.886	ENSPCAG00000011541	CPSF1	94	94.886	Procavia_capensis
ENSSSCG00000005906	CPSF1	100	92.595	ENSPCOG00000020001	CPSF1	100	92.595	Propithecus_coquereli
ENSSSCG00000005906	CPSF1	90	98.857	ENSPVAG00000006761	CPSF1	91	98.857	Pteropus_vampyrus
ENSSSCG00000005906	CPSF1	100	77.490	ENSPNYG00000004906	cpsf1	100	77.422	Pundamilia_nyererei
ENSSSCG00000005906	CPSF1	100	74.586	ENSPNAG00000024395	cpsf1	100	74.586	Pygocentrus_nattereri
ENSSSCG00000005906	CPSF1	100	95.568	ENSRNOG00000030705	Cpsf1	100	95.568	Rattus_norvegicus
ENSSSCG00000005906	CPSF1	100	95.848	ENSRBIG00000044907	CPSF1	100	95.848	Rhinopithecus_bieti
ENSSSCG00000005906	CPSF1	100	95.779	ENSRROG00000044861	CPSF1	100	95.779	Rhinopithecus_roxellana
ENSSSCG00000005906	CPSF1	97	95.777	ENSSBOG00000027177	CPSF1	100	95.777	Saimiri_boliviensis_boliviensis
ENSSSCG00000005906	CPSF1	100	92.616	ENSSHAG00000006500	CPSF1	100	92.616	Sarcophilus_harrisii
ENSSSCG00000005906	CPSF1	100	77.273	ENSSFOG00015004606	cpsf1	100	80.277	Scleropages_formosus
ENSSSCG00000005906	CPSF1	100	77.365	ENSSMAG00000020547	cpsf1	100	77.500	Scophthalmus_maximus
ENSSSCG00000005906	CPSF1	100	78.093	ENSSDUG00000001100	cpsf1	100	78.300	Seriola_dumerili
ENSSSCG00000005906	CPSF1	100	78.354	ENSSLDG00000003619	cpsf1	100	78.492	Seriola_lalandi_dorsalis
ENSSSCG00000005906	CPSF1	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
ENSSSCG00000005906	CPSF1	96	87.066	ENSSPUG00000014396	CPSF1	99	87.066	Sphenodon_punctatus
ENSSSCG00000005906	CPSF1	100	77.043	ENSSPAG00000005349	cpsf1	100	77.245	Stegastes_partitus
ENSSSCG00000005906	CPSF1	96	77.139	ENSTRUG00000013134	cpsf1	99	77.139	Takifugu_rubripes
ENSSSCG00000005906	CPSF1	100	77.709	ENSTNIG00000014027	cpsf1	100	77.572	Tetraodon_nigroviridis
ENSSSCG00000005906	CPSF1	77	86.621	ENSTBEG00000001756	CPSF1	91	86.621	Tupaia_belangeri
ENSSSCG00000005906	CPSF1	90	97.237	ENSTTRG00000001937	CPSF1	90	97.237	Tursiops_truncatus
ENSSSCG00000005906	CPSF1	97	97.067	ENSUAMG00000006476	CPSF1	98	97.067	Ursus_americanus
ENSSSCG00000005906	CPSF1	100	76.971	ENSXCOG00000003608	cpsf1	100	77.248	Xiphophorus_couchianus
ENSSSCG00000005906	CPSF1	100	76.381	ENSXMAG00000005798	cpsf1	100	76.657	Xiphophorus_maculatus