EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000006078 (Gene tree)
Gene ID: 100739449
Gene Symbol: POP1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 46745 bases
Position: chr4:38609478-38656222
Accession: 100739449
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000006490	POP1	PF06978.11	1.8e-36	1	2
ENSSSCP00000006490	POP1	PF06978.11	1.8e-36	2	2
ENSSSCP00000006490	POPLD	PF08170.12	1.1e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000006669	POP1-201	3147	XM_003481375	ENSSSCP00000006490	1003 (aa)	XP_003481423	F1S0M3

Gene Model

Click here to download ENSSSCG00000006078's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03008	Ribosome biogenesis in eukaryotes	KEGG
ssc03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000006078's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000006078	POP1	100	82.227	ENSG00000104356	POP1	100	87.978	Homo_sapiens
ENSSSCG00000006078	POP1	100	47.881	ENSAPOG00000008198	pop1	100	47.784	Acanthochromis_polyacanthus
ENSSSCG00000006078	POP1	100	79.472	ENSAMEG00000000556	POP1	100	79.472	Ailuropoda_melanoleuca
ENSSSCG00000006078	POP1	90	49.731	ENSACIG00000004169	POP1	100	47.093	Amphilophus_citrinellus
ENSSSCG00000006078	POP1	100	47.308	ENSAOCG00000010991	pop1	100	47.353	Amphiprion_ocellaris
ENSSSCG00000006078	POP1	91	47.330	ENSAPEG00000007607	pop1	96	47.589	Amphiprion_percula
ENSSSCG00000006078	POP1	100	46.831	ENSATEG00000024814	POP1	100	46.635	Anabas_testudineus
ENSSSCG00000006078	POP1	92	61.587	ENSAPLG00000014418	POP1	100	61.587	Anas_platyrhynchos
ENSSSCG00000006078	POP1	99	55.545	ENSACAG00000016083	POP1	100	55.534	Anolis_carolinensis
ENSSSCG00000006078	POP1	89	87.798	ENSANAG00000026360	POP1	99	87.798	Aotus_nancymaae
ENSSSCG00000006078	POP1	100	47.099	ENSACLG00000010951	pop1	100	47.872	Astatotilapia_calliptera
ENSSSCG00000006078	POP1	100	45.931	ENSAMXG00000014483	POP1	100	45.463	Astyanax_mexicanus
ENSSSCG00000006078	POP1	100	84.154	ENSBTAG00000012596	POP1	100	84.154	Bos_taurus
ENSSSCG00000006078	POP1	100	79.863	ENSCJAG00000015567	POP1	100	79.863	Callithrix_jacchus
ENSSSCG00000006078	POP1	100	80.454	ENSCAFG00000000469	POP1	100	80.454	Canis_familiaris
ENSSSCG00000006078	POP1	100	81.318	ENSCAFG00020026765	POP1	100	81.318	Canis_lupus_dingo
ENSSSCG00000006078	POP1	100	84.366	ENSCHIG00000017066	POP1	100	84.366	Capra_hircus
ENSSSCG00000006078	POP1	100	80.078	ENSTSYG00000003097	POP1	100	80.078	Carlito_syrichta
ENSSSCG00000006078	POP1	100	74.125	ENSCAPG00000007251	POP1	100	74.125	Cavia_aperea
ENSSSCG00000006078	POP1	100	76.735	ENSCPOG00000002901	POP1	100	76.735	Cavia_porcellus
ENSSSCG00000006078	POP1	100	80.352	ENSCCAG00000018939	POP1	94	87.830	Cebus_capucinus
ENSSSCG00000006078	POP1	100	81.694	ENSCATG00000040916	POP1	100	81.543	Cercocebus_atys
ENSSSCG00000006078	POP1	100	77.713	ENSCLAG00000007208	POP1	97	77.713	Chinchilla_lanigera
ENSSSCG00000006078	POP1	90	81.562	ENSCSAG00000012340	POP1	99	81.562	Chlorocebus_sabaeus
ENSSSCG00000006078	POP1	95	75.592	ENSCHOG00000011432	POP1	100	75.592	Choloepus_hoffmanni
ENSSSCG00000006078	POP1	100	63.592	ENSCPBG00000006373	POP1	100	64.181	Chrysemys_picta_bellii
ENSSSCG00000006078	POP1	82	37.743	ENSCING00000008323	-	90	36.042	Ciona_intestinalis
ENSSSCG00000006078	POP1	100	81.738	ENSCANG00000001647	POP1	100	81.738	Colobus_angolensis_palliatus
ENSSSCG00000006078	POP1	100	74.460	ENSCGRG00001017308	Pop1	100	74.460	Cricetulus_griseus_chok1gshd
ENSSSCG00000006078	POP1	100	68.959	ENSCGRG00000010824	Pop1	100	68.959	Cricetulus_griseus_crigri
ENSSSCG00000006078	POP1	100	45.813	ENSCSEG00000008737	POP1	100	45.717	Cynoglossus_semilaevis
ENSSSCG00000006078	POP1	100	47.973	ENSCVAG00000022248	pop1	100	47.876	Cyprinodon_variegatus
ENSSSCG00000006078	POP1	100	74.571	ENSDNOG00000019974	POP1	100	74.571	Dasypus_novemcinctus
ENSSSCG00000006078	POP1	100	69.057	ENSDORG00000015384	Pop1	100	69.057	Dipodomys_ordii
ENSSSCG00000006078	POP1	62	32.805	FBgn0026702	l(1)G0045	71	32.500	Drosophila_melanogaster
ENSSSCG00000006078	POP1	88	69.258	ENSETEG00000007839	POP1	88	69.258	Echinops_telfairi
ENSSSCG00000006078	POP1	100	82.793	ENSEASG00005003189	POP1	98	82.793	Equus_asinus_asinus
ENSSSCG00000006078	POP1	100	82.891	ENSECAG00000024236	POP1	100	82.891	Equus_caballus
ENSSSCG00000006078	POP1	67	83.333	ENSEEUG00000003050	-	70	83.333	Erinaceus_europaeus
ENSSSCG00000006078	POP1	100	48.199	ENSELUG00000003526	pop1	100	48.450	Esox_lucius
ENSSSCG00000006078	POP1	100	82.498	ENSFCAG00000002168	POP1	100	82.498	Felis_catus
ENSSSCG00000006078	POP1	100	58.829	ENSFALG00000005711	POP1	100	59.118	Ficedula_albicollis
ENSSSCG00000006078	POP1	100	77.669	ENSFDAG00000017068	POP1	100	77.669	Fukomys_damarensis
ENSSSCG00000006078	POP1	100	46.065	ENSFHEG00000019518	pop1	100	46.449	Fundulus_heteroclitus
ENSSSCG00000006078	POP1	92	46.778	ENSGMOG00000000659	POP1	97	47.089	Gadus_morhua
ENSSSCG00000006078	POP1	100	47.348	ENSGAFG00000019770	POP1	100	47.348	Gambusia_affinis
ENSSSCG00000006078	POP1	100	45.881	ENSGACG00000003499	pop1	100	46.169	Gasterosteus_aculeatus
ENSSSCG00000006078	POP1	100	63.235	ENSGAGG00000011737	POP1	98	63.050	Gopherus_agassizii
ENSSSCG00000006078	POP1	100	82.324	ENSGGOG00000003176	POP1	100	82.324	Gorilla_gorilla
ENSSSCG00000006078	POP1	100	47.776	ENSHBUG00000021583	pop1	100	47.776	Haplochromis_burtoni
ENSSSCG00000006078	POP1	100	77.419	ENSHGLG00000006029	POP1	100	77.419	Heterocephalus_glaber_female
ENSSSCG00000006078	POP1	100	77.419	ENSHGLG00100016879	POP1	100	77.419	Heterocephalus_glaber_male
ENSSSCG00000006078	POP1	90	50.054	ENSHCOG00000013888	pop1	96	50.054	Hippocampus_comes
ENSSSCG00000006078	POP1	99	45.741	ENSIPUG00000018336	pop1	99	44.962	Ictalurus_punctatus
ENSSSCG00000006078	POP1	100	77.615	ENSSTOG00000011455	POP1	97	77.615	Ictidomys_tridecemlineatus
ENSSSCG00000006078	POP1	100	73.294	ENSJJAG00000013325	Pop1	100	73.294	Jaculus_jaculus
ENSSSCG00000006078	POP1	100	47.707	ENSKMAG00000001346	POP1	100	47.512	Kryptolebias_marmoratus
ENSSSCG00000006078	POP1	100	46.056	ENSLBEG00000024457	POP1	100	46.056	Labrus_bergylta
ENSSSCG00000006078	POP1	93	55.465	ENSLACG00000012498	POP1	100	55.465	Latimeria_chalumnae
ENSSSCG00000006078	POP1	100	50.778	ENSLOCG00000009817	POP1	100	50.925	Lepisosteus_oculatus
ENSSSCG00000006078	POP1	100	79.765	ENSLAFG00000010770	POP1	100	79.765	Loxodonta_africana
ENSSSCG00000006078	POP1	100	81.543	ENSMFAG00000000347	POP1	100	81.543	Macaca_fascicularis
ENSSSCG00000006078	POP1	100	81.250	ENSMNEG00000036870	POP1	100	81.250	Macaca_nemestrina
ENSSSCG00000006078	POP1	100	81.445	ENSMLEG00000034986	POP1	100	81.445	Mandrillus_leucophaeus
ENSSSCG00000006078	POP1	100	47.193	ENSMAMG00000004040	pop1	100	47.154	Mastacembelus_armatus
ENSSSCG00000006078	POP1	100	47.872	ENSMZEG00005025448	pop1	100	47.872	Maylandia_zebra
ENSSSCG00000006078	POP1	100	57.744	ENSMGAG00000012167	POP1	100	57.744	Meleagris_gallopavo
ENSSSCG00000006078	POP1	100	75.344	ENSMAUG00000017537	Pop1	100	75.344	Mesocricetus_auratus
ENSSSCG00000006078	POP1	100	80.938	ENSMICG00000004361	POP1	100	80.938	Microcebus_murinus
ENSSSCG00000006078	POP1	100	73.990	ENSMOCG00000006356	Pop1	100	73.990	Microtus_ochrogaster
ENSSSCG00000006078	POP1	100	44.098	ENSMMOG00000018242	pop1	100	44.000	Mola_mola
ENSSSCG00000006078	POP1	100	65.863	ENSMODG00000006561	POP1	100	66.021	Monodelphis_domestica
ENSSSCG00000006078	POP1	100	48.015	ENSMALG00000012621	POP1	100	48.112	Monopterus_albus
ENSSSCG00000006078	POP1	100	74.216	MGP_CAROLIEiJ_G0019726	Pop1	100	74.216	Mus_caroli
ENSSSCG00000006078	POP1	100	74.435	ENSMUSG00000022325	Pop1	100	74.435	Mus_musculus
ENSSSCG00000006078	POP1	100	74.533	MGP_PahariEiJ_G0019735	Pop1	100	74.533	Mus_pahari
ENSSSCG00000006078	POP1	100	74.238	MGP_SPRETEiJ_G0020622	Pop1	100	74.238	Mus_spretus
ENSSSCG00000006078	POP1	100	80.215	ENSMPUG00000015250	POP1	100	80.215	Mustela_putorius_furo
ENSSSCG00000006078	POP1	100	78.116	ENSMLUG00000010204	POP1	100	78.214	Myotis_lucifugus
ENSSSCG00000006078	POP1	100	77.233	ENSNGAG00000001582	Pop1	100	77.233	Nannospalax_galili
ENSSSCG00000006078	POP1	89	48.148	ENSNBRG00000002356	pop1	94	48.332	Neolamprologus_brichardi
ENSSSCG00000006078	POP1	100	81.348	ENSNLEG00000002541	POP1	100	81.348	Nomascus_leucogenys
ENSSSCG00000006078	POP1	94	59.793	ENSMEUG00000003118	POP1	98	59.793	Notamacropus_eugenii
ENSSSCG00000006078	POP1	100	75.560	ENSOPRG00000007667	POP1	100	75.560	Ochotona_princeps
ENSSSCG00000006078	POP1	100	76.585	ENSODEG00000003984	POP1	100	76.585	Octodon_degus
ENSSSCG00000006078	POP1	100	47.826	ENSONIG00000016445	pop1	100	47.830	Oreochromis_niloticus
ENSSSCG00000006078	POP1	60	66.871	ENSOANG00000001278	-	94	66.871	Ornithorhynchus_anatinus
ENSSSCG00000006078	POP1	100	77.454	ENSOCUG00000017400	POP1	100	77.454	Oryctolagus_cuniculus
ENSSSCG00000006078	POP1	92	49.631	ENSORLG00000002839	pop1	100	47.915	Oryzias_latipes
ENSSSCG00000006078	POP1	90	49.679	ENSORLG00020022450	POP1	96	49.465	Oryzias_latipes_hni
ENSSSCG00000006078	POP1	92	50.264	ENSORLG00015012746	POP1	100	48.299	Oryzias_latipes_hsok
ENSSSCG00000006078	POP1	100	47.984	ENSOMEG00000006915	pop1	99	47.984	Oryzias_melastigma
ENSSSCG00000006078	POP1	100	78.320	ENSOGAG00000001466	POP1	100	78.320	Otolemur_garnettii
ENSSSCG00000006078	POP1	100	82.227	ENSPPAG00000018410	POP1	100	82.227	Pan_paniscus
ENSSSCG00000006078	POP1	100	81.925	ENSPPRG00000005002	POP1	100	81.925	Panthera_pardus
ENSSSCG00000006078	POP1	100	82.220	ENSPTIG00000016527	POP1	100	82.220	Panthera_tigris_altaica
ENSSSCG00000006078	POP1	100	82.227	ENSPTRG00000020458	POP1	100	82.227	Pan_troglodytes
ENSSSCG00000006078	POP1	100	81.250	ENSPANG00000009704	POP1	100	81.250	Papio_anubis
ENSSSCG00000006078	POP1	100	49.903	ENSPKIG00000016325	POP1	100	50.194	Paramormyrops_kingsleyae
ENSSSCG00000006078	POP1	100	62.120	ENSPSIG00000012343	POP1	100	62.610	Pelodiscus_sinensis
ENSSSCG00000006078	POP1	90	49.619	ENSPMGG00000022253	POP1	95	49.624	Periophthalmus_magnuspinnatus
ENSSSCG00000006078	POP1	99	73.720	ENSPEMG00000023633	Pop1	100	73.720	Peromyscus_maniculatus_bairdii
ENSSSCG00000006078	POP1	90	43.823	ENSPMAG00000003209	POP1	100	43.400	Petromyzon_marinus
ENSSSCG00000006078	POP1	100	67.181	ENSPCIG00000012216	POP1	100	67.181	Phascolarctos_cinereus
ENSSSCG00000006078	POP1	100	47.549	ENSPFOG00000012490	POP1	100	47.549	Poecilia_formosa
ENSSSCG00000006078	POP1	100	47.549	ENSPLAG00000004646	POP1	100	47.549	Poecilia_latipinna
ENSSSCG00000006078	POP1	100	47.750	ENSPMEG00000019592	POP1	100	47.750	Poecilia_mexicana
ENSSSCG00000006078	POP1	100	47.554	ENSPREG00000020951	POP1	100	47.554	Poecilia_reticulata
ENSSSCG00000006078	POP1	100	81.543	ENSPPYG00000018777	POP1	100	81.543	Pongo_abelii
ENSSSCG00000006078	POP1	100	74.143	ENSPCAG00000016662	POP1	100	73.457	Procavia_capensis
ENSSSCG00000006078	POP1	100	81.720	ENSPCOG00000019420	POP1	100	81.720	Propithecus_coquereli
ENSSSCG00000006078	POP1	100	81.532	ENSPVAG00000014468	POP1	100	81.532	Pteropus_vampyrus
ENSSSCG00000006078	POP1	89	49.236	ENSPNYG00000004476	pop1	97	48.796	Pundamilia_nyererei
ENSSSCG00000006078	POP1	100	45.961	ENSPNAG00000000265	pop1	100	44.837	Pygocentrus_nattereri
ENSSSCG00000006078	POP1	100	74.926	ENSRNOG00000005243	Pop1	100	74.926	Rattus_norvegicus
ENSSSCG00000006078	POP1	100	81.836	ENSRBIG00000007996	POP1	100	81.836	Rhinopithecus_bieti
ENSSSCG00000006078	POP1	100	81.934	ENSRROG00000012334	POP1	100	81.934	Rhinopithecus_roxellana
ENSSSCG00000006078	POP1	99	80.731	ENSSBOG00000020830	POP1	100	80.731	Saimiri_boliviensis_boliviensis
ENSSSCG00000006078	POP1	100	66.795	ENSSHAG00000000296	POP1	100	66.795	Sarcophilus_harrisii
ENSSSCG00000006078	POP1	100	48.738	ENSSFOG00015007429	pop1	99	48.544	Scleropages_formosus
ENSSSCG00000006078	POP1	85	52.582	ENSSMAG00000010467	POP1	97	48.250	Scophthalmus_maximus
ENSSSCG00000006078	POP1	100	47.893	ENSSDUG00000007817	POP1	100	47.701	Seriola_dumerili
ENSSSCG00000006078	POP1	100	48.084	ENSSLDG00000012565	POP1	100	48.084	Seriola_lalandi_dorsalis
ENSSSCG00000006078	POP1	100	57.812	ENSSPUG00000003550	-	100	58.537	Sphenodon_punctatus
ENSSSCG00000006078	POP1	90	50.055	ENSSPAG00000014955	pop1	100	46.706	Stegastes_partitus
ENSSSCG00000006078	POP1	92	55.895	ENSTGUG00000012011	-	100	55.895	Taeniopygia_guttata
ENSSSCG00000006078	POP1	91	48.721	ENSTRUG00000010856	pop1	94	48.721	Takifugu_rubripes
ENSSSCG00000006078	POP1	93	48.806	ENSTNIG00000013297	pop1	100	48.806	Tetraodon_nigroviridis
ENSSSCG00000006078	POP1	95	76.742	ENSTBEG00000014214	POP1	100	76.742	Tupaia_belangeri
ENSSSCG00000006078	POP1	100	84.547	ENSTTRG00000016071	POP1	100	84.547	Tursiops_truncatus
ENSSSCG00000006078	POP1	99	78.010	ENSUAMG00000017309	POP1	100	78.010	Ursus_americanus
ENSSSCG00000006078	POP1	100	80.019	ENSUMAG00000016952	POP1	100	85.830	Ursus_maritimus
ENSSSCG00000006078	POP1	83	91.209	ENSVPAG00000008278	POP1	82	91.209	Vicugna_pacos
ENSSSCG00000006078	POP1	100	81.121	ENSVVUG00000010994	POP1	100	81.121	Vulpes_vulpes
ENSSSCG00000006078	POP1	100	43.275	ENSXCOG00000017043	POP1	100	43.275	Xiphophorus_couchianus
ENSSSCG00000006078	POP1	100	47.353	ENSXMAG00000002472	POP1	100	47.353	Xiphophorus_maculatus