EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000006101 (Gene tree)
Gene ID: 100513148
Gene Symbol: -
Alias: -
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 119968 bases
Position: chr4:42249480-42369447
Accession: 100513148
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000006512	ResIII	PF04851.15	1.5e-10	1	1
ENSSSCP00000033298	ResIII	PF04851.15	1.5e-10	1	1
ENSSSCP00000042056	ResIII	PF04851.15	1.8e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000049442	-	2779	-	ENSSSCP00000033298	798 (aa)	-	F1RY50
ENSSSCT00000040934	-	3072	XM_021089101	ENSSSCP00000042056	895 (aa)	XP_020944760	A0A287AE18
ENSSSCT00000006692	-	2466	-	ENSSSCP00000006512	798 (aa)	-	F1RY50

Gene Model

Click here to download ENSSSCG00000006101's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000006101's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000006101	-	73	31.833	ENSSSCG00000012649	SMARCA1	52	31.833
ENSSSCG00000006101	-	63	31.456	ENSSSCG00000006701	CHD1L	60	31.456
ENSSSCG00000006101	-	80	45.008	ENSSSCG00000003905	RAD54L	82	45.245
ENSSSCG00000006101	-	73	30.084	ENSSSCG00000009047	SMARCA5	54	30.084
ENSSSCG00000006101	-	62	32.197	ENSSSCG00000009193	SMARCAD1	60	32.197
ENSSSCG00000006101	-	53	33.981	ENSSSCG00000010486	HELLS	53	33.981

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000006101	-	91	88.567	ENSG00000265817	FSBP	100	88.567	Homo_sapiens
ENSSSCG00000006101	-	99	88.625	ENSG00000197275	RAD54B	100	85.495	Homo_sapiens
ENSSSCG00000006101	-	99	90.250	ENSAMEG00000005834	-	99	86.374	Ailuropoda_melanoleuca
ENSSSCG00000006101	-	98	59.470	ENSACIG00000013005	rad54b	99	55.801	Amphilophus_citrinellus
ENSSSCG00000006101	-	98	59.171	ENSAOCG00000008523	rad54b	99	54.555	Amphiprion_ocellaris
ENSSSCG00000006101	-	98	58.175	ENSAPEG00000001673	rad54b	99	54.515	Amphiprion_percula
ENSSSCG00000006101	-	98	59.142	ENSATEG00000001527	rad54b	99	54.878	Anabas_testudineus
ENSSSCG00000006101	-	99	74.593	ENSAPLG00000014366	-	99	68.478	Anas_platyrhynchos
ENSSSCG00000006101	-	99	71.339	ENSACAG00000003671	-	99	71.339	Anolis_carolinensis
ENSSSCG00000006101	-	81	86.265	ENSANAG00000019528	-	100	86.265	Aotus_nancymaae
ENSSSCG00000006101	-	98	59.217	ENSACLG00000007826	rad54b	99	54.545	Astatotilapia_calliptera
ENSSSCG00000006101	-	97	58.726	ENSAMXG00000039985	rad54b	95	58.543	Astyanax_mexicanus
ENSSSCG00000006101	-	99	89.975	ENSBTAG00000000632	RAD54B	99	87.225	Bos_taurus
ENSSSCG00000006101	-	90	35.027	WBGene00013792	Y116A8C.13	83	34.718	Caenorhabditis_elegans
ENSSSCG00000006101	-	99	86.608	ENSCJAG00000000080	-	100	86.759	Callithrix_jacchus
ENSSSCG00000006101	-	99	88.625	ENSCAFG00000009179	RAD54B	99	84.945	Canis_familiaris
ENSSSCG00000006101	-	99	88.250	ENSCAFG00020012084	-	99	84.615	Canis_lupus_dingo
ENSSSCG00000006101	-	99	90.100	ENSCHIG00000008230	-	99	87.004	Capra_hircus
ENSSSCG00000006101	-	99	87.109	ENSTSYG00000013234	-	99	83.828	Carlito_syrichta
ENSSSCG00000006101	-	99	85.571	ENSCPOG00000011643	-	99	81.195	Cavia_porcellus
ENSSSCG00000006101	-	99	87.093	ENSCCAG00000011754	-	100	87.155	Cebus_capucinus
ENSSSCG00000006101	-	99	88.360	ENSCATG00000030661	-	100	88.276	Cercocebus_atys
ENSSSCG00000006101	-	99	85.607	ENSCLAG00000010476	-	100	81.518	Chinchilla_lanigera
ENSSSCG00000006101	-	99	88.110	ENSCSAG00000012712	-	100	84.818	Chlorocebus_sabaeus
ENSSSCG00000006101	-	99	74.060	ENSCPBG00000003204	-	99	68.558	Chrysemys_picta_bellii
ENSSSCG00000006101	-	99	88.611	ENSCANG00000017939	-	100	88.552	Colobus_angolensis_palliatus
ENSSSCG00000006101	-	99	82.707	ENSCGRG00001020184	Rad54b	99	78.396	Cricetulus_griseus_chok1gshd
ENSSSCG00000006101	-	99	81.454	ENSCGRG00000016752	Rad54b	99	77.283	Cricetulus_griseus_crigri
ENSSSCG00000006101	-	98	58.868	ENSCSEG00000001601	rad54b	99	54.857	Cynoglossus_semilaevis
ENSSSCG00000006101	-	97	61.372	ENSCVAG00000009200	rad54b	99	57.063	Cyprinodon_variegatus
ENSSSCG00000006101	-	98	58.417	ENSDARG00000092134	rad54b	100	60.276	Danio_rerio
ENSSSCG00000006101	-	99	85.411	ENSDNOG00000015535	-	99	81.818	Dasypus_novemcinctus
ENSSSCG00000006101	-	99	85.194	ENSDORG00000002492	Rad54b	99	81.465	Dipodomys_ordii
ENSSSCG00000006101	-	84	86.053	ENSETEG00000010605	-	100	80.332	Echinops_telfairi
ENSSSCG00000006101	-	99	49.565	ENSEBUG00000009104	rad54b	98	46.638	Eptatretus_burgeri
ENSSSCG00000006101	-	99	88.611	ENSEASG00005004021	-	99	85.714	Equus_asinus_asinus
ENSSSCG00000006101	-	99	88.861	ENSECAG00000021949	-	99	86.249	Equus_caballus
ENSSSCG00000006101	-	83	83.125	ENSEEUG00000008056	-	83	83.125	Erinaceus_europaeus
ENSSSCG00000006101	-	98	58.333	ENSELUG00000009287	rad54b	99	53.625	Esox_lucius
ENSSSCG00000006101	-	99	89.698	ENSFCAG00000015513	-	99	89.669	Felis_catus
ENSSSCG00000006101	-	99	73.275	ENSFALG00000005467	-	99	67.505	Ficedula_albicollis
ENSSSCG00000006101	-	99	85.445	ENSFDAG00000020541	-	100	81.718	Fukomys_damarensis
ENSSSCG00000006101	-	98	58.438	ENSFHEG00000014382	rad54b	87	58.438	Fundulus_heteroclitus
ENSSSCG00000006101	-	98	56.604	ENSGMOG00000014774	rad54b	98	56.604	Gadus_morhua
ENSSSCG00000006101	-	99	73.467	ENSGALG00000043597	RAD54B	99	68.078	Gallus_gallus
ENSSSCG00000006101	-	98	59.398	ENSGAFG00000007901	rad54b	99	55.088	Gambusia_affinis
ENSSSCG00000006101	-	98	58.469	ENSGACG00000009128	rad54b	99	54.693	Gasterosteus_aculeatus
ENSSSCG00000006101	-	99	73.434	ENSGAGG00000018747	-	99	67.389	Gopherus_agassizii
ENSSSCG00000006101	-	99	88.486	ENSGGOG00000023516	-	99	84.928	Gorilla_gorilla
ENSSSCG00000006101	-	98	58.942	ENSHBUG00000016017	rad54b	99	53.961	Haplochromis_burtoni
ENSSSCG00000006101	-	99	84.309	ENSHGLG00000008263	RAD54B	99	80.088	Heterocephalus_glaber_female
ENSSSCG00000006101	-	99	83.313	ENSHGLG00100008108	-	99	79.348	Heterocephalus_glaber_male
ENSSSCG00000006101	-	97	58.175	ENSHCOG00000004764	rad54b	98	56.227	Hippocampus_comes
ENSSSCG00000006101	-	98	57.822	ENSIPUG00000018531	rad54b	99	52.211	Ictalurus_punctatus
ENSSSCG00000006101	-	99	85.606	ENSSTOG00000010791	-	99	81.174	Ictidomys_tridecemlineatus
ENSSSCG00000006101	-	99	84.336	ENSJJAG00000010314	Rad54b	99	79.758	Jaculus_jaculus
ENSSSCG00000006101	-	97	57.761	ENSKMAG00000004744	rad54b	99	53.599	Kryptolebias_marmoratus
ENSSSCG00000006101	-	93	68.901	ENSLACG00000000859	-	100	68.901	Latimeria_chalumnae
ENSSSCG00000006101	-	99	64.411	ENSLOCG00000010100	rad54b	96	62.958	Lepisosteus_oculatus
ENSSSCG00000006101	-	99	84.375	ENSLAFG00000015315	-	100	84.158	Loxodonta_africana
ENSSSCG00000006101	-	99	88.110	ENSMFAG00000031629	-	100	88.000	Macaca_fascicularis
ENSSSCG00000006101	-	99	88.110	ENSMMUG00000005659	-	100	84.928	Macaca_mulatta
ENSSSCG00000006101	-	99	87.985	ENSMNEG00000016408	-	100	84.802	Macaca_nemestrina
ENSSSCG00000006101	-	99	88.360	ENSMLEG00000006946	-	100	85.149	Mandrillus_leucophaeus
ENSSSCG00000006101	-	98	58.831	ENSMAMG00000012269	rad54b	99	55.628	Mastacembelus_armatus
ENSSSCG00000006101	-	98	59.217	ENSMZEG00005005281	rad54b	95	59.217	Maylandia_zebra
ENSSSCG00000006101	-	99	73.592	ENSMGAG00000012024	-	99	67.606	Meleagris_gallopavo
ENSSSCG00000006101	-	99	82.581	ENSMAUG00000013586	Rad54b	99	77.655	Mesocricetus_auratus
ENSSSCG00000006101	-	99	87.860	ENSMICG00000000754	-	99	82.832	Microcebus_murinus
ENSSSCG00000006101	-	99	80.976	ENSMOCG00000020035	Rad54b	99	76.659	Microtus_ochrogaster
ENSSSCG00000006101	-	98	58.564	ENSMMOG00000003394	rad54b	99	54.565	Mola_mola
ENSSSCG00000006101	-	99	76.478	ENSMODG00000007343	-	99	76.478	Monodelphis_domestica
ENSSSCG00000006101	-	81	59.317	ENSMALG00000001520	rad54b	99	59.317	Monopterus_albus
ENSSSCG00000006101	-	99	82.228	MGP_CAROLIEiJ_G0025810	Rad54b	100	77.655	Mus_caroli
ENSSSCG00000006101	-	99	81.830	ENSMUSG00000078773	Rad54b	100	77.187	Mus_musculus
ENSSSCG00000006101	-	99	82.286	MGP_PahariEiJ_G0023933	Rad54b	100	77.630	Mus_pahari
ENSSSCG00000006101	-	99	82.581	MGP_SPRETEiJ_G0026758	Rad54b	100	77.852	Mus_spretus
ENSSSCG00000006101	-	99	89.434	ENSMPUG00000008878	-	99	88.752	Mustela_putorius_furo
ENSSSCG00000006101	-	99	88.250	ENSMLUG00000008953	-	100	82.895	Myotis_lucifugus
ENSSSCG00000006101	-	99	85.518	ENSNGAG00000017537	Rad54b	99	80.921	Nannospalax_galili
ENSSSCG00000006101	-	98	59.217	ENSNBRG00000013394	rad54b	99	54.767	Neolamprologus_brichardi
ENSSSCG00000006101	-	99	88.125	ENSNLEG00000003062	-	99	88.017	Nomascus_leucogenys
ENSSSCG00000006101	-	80	73.990	ENSMEUG00000012426	-	72	73.500	Notamacropus_eugenii
ENSSSCG00000006101	-	99	84.403	ENSODEG00000019564	-	99	80.620	Octodon_degus
ENSSSCG00000006101	-	99	78.463	ENSODEG00000002650	-	96	84.853	Octodon_degus
ENSSSCG00000006101	-	98	59.446	ENSONIG00000006067	rad54b	99	54.821	Oreochromis_niloticus
ENSSSCG00000006101	-	94	75.798	ENSOANG00000011348	-	99	75.798	Ornithorhynchus_anatinus
ENSSSCG00000006101	-	99	86.918	ENSOCUG00000016478	-	99	82.068	Oryctolagus_cuniculus
ENSSSCG00000006101	-	98	61.006	ENSORLG00000008918	rad54b	99	62.133	Oryzias_latipes
ENSSSCG00000006101	-	81	62.133	ENSORLG00020012171	rad54b	99	62.133	Oryzias_latipes_hni
ENSSSCG00000006101	-	98	61.209	ENSORLG00015018536	rad54b	99	55.745	Oryzias_latipes_hsok
ENSSSCG00000006101	-	96	59.178	ENSOMEG00000004345	rad54b	99	59.178	Oryzias_melastigma
ENSSSCG00000006101	-	99	86.483	ENSOGAG00000007854	-	99	82.967	Otolemur_garnettii
ENSSSCG00000006101	-	99	89.513	ENSOARG00000007691	-	99	89.513	Ovis_aries
ENSSSCG00000006101	-	99	86.875	ENSPPAG00000029572	-	100	83.736	Pan_paniscus
ENSSSCG00000006101	-	99	89.824	ENSPPRG00000007571	-	99	89.807	Panthera_pardus
ENSSSCG00000006101	-	90	89.807	ENSPTIG00000012670	-	99	89.807	Panthera_tigris_altaica
ENSSSCG00000006101	-	99	88.500	ENSPTRG00000020427	-	100	88.430	Pan_troglodytes
ENSSSCG00000006101	-	99	88.360	ENSPANG00000019566	-	100	85.149	Papio_anubis
ENSSSCG00000006101	-	97	62.916	ENSPKIG00000014974	rad54b	99	57.705	Paramormyrops_kingsleyae
ENSSSCG00000006101	-	99	72.055	ENSPSIG00000002383	-	98	71.553	Pelodiscus_sinensis
ENSSSCG00000006101	-	99	82.478	ENSPEMG00000012133	Rad54b	99	78.232	Peromyscus_maniculatus_bairdii
ENSSSCG00000006101	-	99	58.552	ENSPMAG00000002916	rad54b	99	59.029	Petromyzon_marinus
ENSSSCG00000006101	-	99	78.321	ENSPCIG00000020151	-	95	77.447	Phascolarctos_cinereus
ENSSSCG00000006101	-	98	60.951	ENSPFOG00000023411	rad54b	99	55.213	Poecilia_formosa
ENSSSCG00000006101	-	98	61.202	ENSPLAG00000010430	rad54b	99	55.508	Poecilia_latipinna
ENSSSCG00000006101	-	98	60.652	ENSPMEG00000016873	rad54b	95	59.777	Poecilia_mexicana
ENSSSCG00000006101	-	98	60.859	ENSPREG00000018443	rad54b	99	56.493	Poecilia_reticulata
ENSSSCG00000006101	-	99	88.375	ENSPPYG00000018750	-	100	85.275	Pongo_abelii
ENSSSCG00000006101	-	99	87.860	ENSPCOG00000026845	-	99	87.448	Propithecus_coquereli
ENSSSCG00000006101	-	92	88.259	ENSPVAG00000000261	-	92	88.259	Pteropus_vampyrus
ENSSSCG00000006101	-	97	59.363	ENSPNYG00000018303	rad54b	95	59.363	Pundamilia_nyererei
ENSSSCG00000006101	-	98	58.521	ENSPNAG00000000295	rad54b	99	54.013	Pygocentrus_nattereri
ENSSSCG00000006101	-	99	80.075	ENSRNOG00000039949	Rad54b	99	75.166	Rattus_norvegicus
ENSSSCG00000006101	-	99	87.735	ENSRBIG00000020419	-	100	84.488	Rhinopithecus_bieti
ENSSSCG00000006101	-	99	87.735	ENSRROG00000039897	-	100	84.488	Rhinopithecus_roxellana
ENSSSCG00000006101	-	89	38.198	YBR073W	RDH54	82	36.925	Saccharomyces_cerevisiae
ENSSSCG00000006101	-	99	86.608	ENSSBOG00000028501	-	100	83.516	Saimiri_boliviensis_boliviensis
ENSSSCG00000006101	-	99	77.987	ENSSHAG00000017038	-	100	73.165	Sarcophilus_harrisii
ENSSSCG00000006101	-	74	64.395	ENSSFOG00015008483	rad54b	91	64.395	Scleropages_formosus
ENSSSCG00000006101	-	98	58.742	ENSSMAG00000018659	rad54b	99	54.696	Scophthalmus_maximus
ENSSSCG00000006101	-	97	58.981	ENSSDUG00000001122	rad54b	98	53.092	Seriola_dumerili
ENSSSCG00000006101	-	98	58.994	ENSSLDG00000013787	rad54b	99	53.165	Seriola_lalandi_dorsalis
ENSSSCG00000006101	-	99	72.125	ENSSPUG00000016497	-	99	67.517	Sphenodon_punctatus
ENSSSCG00000006101	-	98	59.673	ENSSPAG00000012800	rad54b	99	55.740	Stegastes_partitus
ENSSSCG00000006101	-	99	73.091	ENSTGUG00000011880	-	99	66.992	Taeniopygia_guttata
ENSSSCG00000006101	-	97	59.108	ENSTRUG00000010015	rad54b	99	53.632	Takifugu_rubripes
ENSSSCG00000006101	-	99	87.469	ENSTTRG00000006312	-	99	85.793	Tursiops_truncatus
ENSSSCG00000006101	-	99	90.250	ENSUMAG00000016401	-	99	86.374	Ursus_maritimus
ENSSSCG00000006101	-	99	91.217	ENSVPAG00000003157	-	99	88.009	Vicugna_pacos
ENSSSCG00000006101	-	98	59.222	ENSXETG00000025924	rad54b	99	59.497	Xenopus_tropicalis
ENSSSCG00000006101	-	99	59.222	ENSXMAG00000013141	rad54b	99	55.188	Xiphophorus_maculatus