EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSSCG00000006179 (Gene tree)
Gene ID
100516319
Gene Symbol
-
Alias
39K2
Full Name
staufen double-stranded RNA binding protein 2
Gene Type
protein_coding
Species
Sus_scrofa
Status
putative
Strand
Plus strand
Length
318839 bases
Position
chr4:62139475-62458313
Accession
100516319
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSSCP00000039405dsrmPF00035.265.5e-4713
ENSSSCP00000039405dsrmPF00035.265.5e-4723
ENSSSCP00000039405dsrmPF00035.265.5e-4733
ENSSSCP00000058939dsrmPF00035.266.9e-4614
ENSSSCP00000058939dsrmPF00035.266.9e-4624
ENSSSCP00000058939dsrmPF00035.266.9e-4634
ENSSSCP00000058939dsrmPF00035.266.9e-4644
ENSSSCP00000032080dsrmPF00035.268.4e-4614
ENSSSCP00000032080dsrmPF00035.268.4e-4624
ENSSSCP00000032080dsrmPF00035.268.4e-4634
ENSSSCP00000032080dsrmPF00035.268.4e-4644
ENSSSCP00000038199dsrmPF00035.268.4e-4614
ENSSSCP00000038199dsrmPF00035.268.4e-4624
ENSSSCP00000038199dsrmPF00035.268.4e-4634
ENSSSCP00000038199dsrmPF00035.268.4e-4644
ENSSSCP00000006590dsrmPF00035.261e-4513
ENSSSCP00000006590dsrmPF00035.261e-4523
ENSSSCP00000006590dsrmPF00035.261e-4533
ENSSSCP00000041918dsrmPF00035.261e-4513
ENSSSCP00000041918dsrmPF00035.261e-4523
ENSSSCP00000041918dsrmPF00035.261e-4533
ENSSSCP00000057308dsrmPF00035.261.2e-4513
ENSSSCP00000057308dsrmPF00035.261.2e-4523
ENSSSCP00000057308dsrmPF00035.261.2e-4533
ENSSSCP00000047428dsrmPF00035.261e-3813
ENSSSCP00000047428dsrmPF00035.261e-3823
ENSSSCP00000047428dsrmPF00035.261e-3833
ENSSSCP00000050499dsrmPF00035.261e-3813
ENSSSCP00000050499dsrmPF00035.261e-3823
ENSSSCP00000050499dsrmPF00035.261e-3833
ENSSSCP00000058146dsrmPF00035.263.6e-2812
ENSSSCP00000058146dsrmPF00035.263.6e-2822
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSSCT00000064078-4173XM_021089229ENSSSCP00000050499479 (aa)XP_020944888A0A287ATL9
ENSSSCT00000051634-4316XM_021089228ENSSSCP00000058939511 (aa)XP_020944887A0A287BRY4
ENSSSCT00000051111-6034XM_021089191ENSSSCP00000039405627 (aa)XP_020944850A0A287A6A7
ENSSSCT00000046055-4387XM_021089199ENSSSCP00000038199530 (aa)XP_020944858A0A286ZKV6
ENSSSCT00000006773-2860XM_021089204ENSSSCP00000006590570 (aa)XP_020944863F1RWI7
ENSSSCT00000061450-5618XM_021089200ENSSSCP00000041918570 (aa)XP_020944859F1RWI7
ENSSSCT00000043677-5920XM_021089207ENSSSCP00000057308589 (aa)XP_020944866A0A287BMA7
ENSSSCT00000063933-4733XM_021089227ENSSSCP00000032080530 (aa)XP_020944886A0A286ZKV6
ENSSSCT00000052073-3922-ENSSSCP00000058146339 (aa)-A0A287BPW6
ENSSSCT00000050776-6196-ENSSSCP00000047428479 (aa)-A0A287ATL9
Gene Model
Click here to download ENSSSCG00000006179's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000006179's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSSCG00000006179-10055.273ENSSSCG00000027444STAU19653.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSSCG00000006179-10097.912ENSG00000040341STAU210099.048Homo_sapiens
ENSSSCG00000006179-10071.212ENSAPOG00000002892stau28870.798Acanthochromis_polyacanthus
ENSSSCG00000006179-10099.115ENSAMEG00000001864STAU210098.772Ailuropoda_melanoleuca
ENSSSCG00000006179-10071.402ENSACIG00000000839stau210068.160Amphilophus_citrinellus
ENSSSCG00000006179-10071.212ENSAOCG00000013358stau28870.798Amphiprion_ocellaris
ENSSSCG00000006179-10071.212ENSAPEG00000022162stau28870.798Amphiprion_percula
ENSSSCG00000006179-10070.189ENSATEG00000013484stau210067.063Anabas_testudineus
ENSSSCG00000006179-10086.888ENSAPLG00000005175STAU28885.791Anas_platyrhynchos
ENSSSCG00000006179-9978.107ENSACAG00000012977STAU29578.107Anolis_carolinensis
ENSSSCG00000006179-10098.539ENSANAG00000023588STAU29997.904Aotus_nancymaae
ENSSSCG00000006179-10071.023ENSACLG00000024336stau210068.484Astatotilapia_calliptera
ENSSSCG00000006179-10075.734ENSAMXG00000000460stau29073.565Astyanax_mexicanus
ENSSSCG00000006179-10098.539ENSBTAG00000002076STAU210097.697Bos_taurus
ENSSSCG00000006179-10098.820ENSCJAG00000007632STAU210096.491Callithrix_jacchus
ENSSSCG00000006179-9997.246ENSCJAG00000009484-10093.908Callithrix_jacchus
ENSSSCG00000006179-10099.115ENSCAFG00000008077STAU210098.421Canis_familiaris
ENSSSCG00000006179-10099.115ENSCAFG00020017809STAU210098.191Canis_lupus_dingo
ENSSSCG00000006179-10098.525ENSCHIG00000012254STAU210098.026Capra_hircus
ENSSSCG00000006179-10083.366ENSTSYG00000034361-9192.661Carlito_syrichta
ENSSSCG00000006179-7597.674ENSTSYG00000005247-10097.674Carlito_syrichta
ENSSSCG00000006179-9492.857ENSCAPG00000017061-9881.836Cavia_aperea
ENSSSCG00000006179-10098.820ENSCPOG00000015001-10098.747Cavia_porcellus
ENSSSCG00000006179-10098.820ENSCCAG00000035053-9898.667Cebus_capucinus
ENSSSCG00000006179-10098.121ENSCATG00000044825STAU210098.121Cercocebus_atys
ENSSSCG00000006179-10072.211ENSCATG00000031335-9872.266Cercocebus_atys
ENSSSCG00000006179-10098.330ENSCLAG00000001824STAU210098.330Chinchilla_lanigera
ENSSSCG00000006179-10097.935ENSCSAG00000013572-10097.445Chlorocebus_sabaeus
ENSSSCG00000006179-9984.911ENSCHOG00000010590STAU210075.614Choloepus_hoffmanni
ENSSSCG00000006179-10086.693ENSCPBG00000006987STAU29184.740Chrysemys_picta_bellii
ENSSSCG00000006179-7597.674ENSCANG00000039699-10097.674Colobus_angolensis_palliatus
ENSSSCG00000006179-10072.861ENSCANG00000031540-9972.897Colobus_angolensis_palliatus
ENSSSCG00000006179-10097.286ENSCGRG00001006522Stau210094.035Cricetulus_griseus_chok1gshd
ENSSSCG00000006179-9792.835ENSCGRG00000007511Stau29992.835Cricetulus_griseus_crigri
ENSSSCG00000006179-10066.604ENSCSEG00000010050stau28766.949Cynoglossus_semilaevis
ENSSSCG00000006179-10069.346ENSCVAG00000009893stau28868.948Cyprinodon_variegatus
ENSSSCG00000006179-10075.734ENSDARG00000026801stau29073.322Danio_rerio
ENSSSCG00000006179-10097.935ENSDNOG00000039875STAU210096.842Dasypus_novemcinctus
ENSSSCG00000006179-10098.230ENSDORG00000014308Stau210098.121Dipodomys_ordii
ENSSSCG00000006179-10088.454ENSETEG00000009087STAU210087.719Echinops_telfairi
ENSSSCG00000006179-8137.811ENSEBUG00000006591STAU28837.811Eptatretus_burgeri
ENSSSCG00000006179-10098.121ENSEASG00005020174STAU210097.453Equus_asinus_asinus
ENSSSCG00000006179-10098.330ENSECAG00000000260STAU210097.533Equus_caballus
ENSSSCG00000006179-10096.667ENSEEUG00000015102STAU210096.667Erinaceus_europaeus
ENSSSCG00000006179-10071.318ENSELUG00000006988stau29470.939Esox_lucius
ENSSSCG00000006179-10099.115ENSFCAG00000004917STAU210098.520Felis_catus
ENSSSCG00000006179-10086.301ENSFALG00000008552STAU29084.528Ficedula_albicollis
ENSSSCG00000006179-10099.115ENSFDAG00000005157STAU29999.115Fukomys_damarensis
ENSSSCG00000006179-7273.623ENSFHEG00000018386stau28673.623Fundulus_heteroclitus
ENSSSCG00000006179-8076.585ENSGMOG00000005428stau28376.585Gadus_morhua
ENSSSCG00000006179-10086.693ENSGALG00000031390STAU210085.197Gallus_gallus
ENSSSCG00000006179-10069.754ENSGAFG00000008442stau28869.309Gambusia_affinis
ENSSSCG00000006179-10071.839ENSGACG00000002757stau210068.167Gasterosteus_aculeatus
ENSSSCG00000006179-10086.497ENSGAGG00000003794STAU29684.321Gopherus_agassizii
ENSSSCG00000006179-8672.509ENSGGOG00000036979-10072.509Gorilla_gorilla
ENSSSCG00000006179-10098.121ENSGGOG00000026508STAU210098.121Gorilla_gorilla
ENSSSCG00000006179-10071.023ENSHBUG00000020209stau210068.484Haplochromis_burtoni
ENSSSCG00000006179-10098.230ENSHGLG00000014888STAU210095.614Heterocephalus_glaber_female
ENSSSCG00000006179-10098.230ENSHGLG00100005337STAU210095.614Heterocephalus_glaber_male
ENSSSCG00000006179-10070.544ENSHCOG00000004724stau29170.217Hippocampus_comes
ENSSSCG00000006179-10070.633ENSIPUG00000009105stau210067.931Ictalurus_punctatus
ENSSSCG00000006179-10098.820ENSSTOG00000011076STAU210096.053Ictidomys_tridecemlineatus
ENSSSCG00000006179-10097.935ENSJJAG00000020228Stau29998.131Jaculus_jaculus
ENSSSCG00000006179-10071.751ENSKMAG00000006853stau28969.900Kryptolebias_marmoratus
ENSSSCG00000006179-10072.125ENSLBEG00000014492stau210069.406Labrus_bergylta
ENSSSCG00000006179-10079.924ENSLACG00000006873STAU29673.552Latimeria_chalumnae
ENSSSCG00000006179-10063.269ENSLOCG00000003717stau28963.055Lepisosteus_oculatus
ENSSSCG00000006179-10098.820ENSLAFG00000013327STAU210097.719Loxodonta_africana
ENSSSCG00000006179-10097.912ENSMFAG00000044834STAU210097.912Macaca_fascicularis
ENSSSCG00000006179-10077.876ENSMFAG00000037793-9977.882Macaca_fascicularis
ENSSSCG00000006179-10097.912ENSMMUG00000021588-10097.912Macaca_mulatta
ENSSSCG00000006179-10077.876ENSMMUG00000048014-10076.132Macaca_mulatta
ENSSSCG00000006179-10098.121ENSMNEG00000035325STAU210098.121Macaca_nemestrina
ENSSSCG00000006179-8681.787ENSMNEG00000004012-10079.734Macaca_nemestrina
ENSSSCG00000006179-9679.448ENSMLEG00000034013-9879.545Mandrillus_leucophaeus
ENSSSCG00000006179-10097.912ENSMLEG00000044427STAU210097.912Mandrillus_leucophaeus
ENSSSCG00000006179-10070.810ENSMAMG00000023036stau210067.632Mastacembelus_armatus
ENSSSCG00000006179-10071.023ENSMZEG00005021462stau210068.484Maylandia_zebra
ENSSSCG00000006179-10087.084ENSMGAG00000011523STAU28886.151Meleagris_gallopavo
ENSSSCG00000006179-10084.956ENSMAUG00000021644Stau29985.976Mesocricetus_auratus
ENSSSCG00000006179-8293.795ENSMICG00000032397-9894.737Microcebus_murinus
ENSSSCG00000006179-10097.640ENSMICG00000002886-10095.079Microcebus_murinus
ENSSSCG00000006179-10092.902ENSMOCG00000001037Stau210092.784Microtus_ochrogaster
ENSSSCG00000006179-10070.888ENSMMOG00000003579stau210067.918Mola_mola
ENSSSCG00000006179-9278.778ENSMODG00000007112-10078.778Monodelphis_domestica
ENSSSCG00000006179-10067.358ENSMALG00000001524stau29666.434Monopterus_albus
ENSSSCG00000006179-10096.451MGP_CAROLIEiJ_G0013967Stau210096.451Mus_caroli
ENSSSCG00000006179-10096.451ENSMUSG00000025920Stau210096.451Mus_musculus
ENSSSCG00000006179-10095.616MGP_PahariEiJ_G0023852Stau210095.616Mus_pahari
ENSSSCG00000006179-10096.451MGP_SPRETEiJ_G0014772Stau210096.451Mus_spretus
ENSSSCG00000006179-10099.115ENSMPUG00000010221STAU210098.520Mustela_putorius_furo
ENSSSCG00000006179-9998.225ENSMLUG00000000592STAU210097.647Myotis_lucifugus
ENSSSCG00000006179-10097.345ENSNGAG00000017873Stau210096.673Nannospalax_galili
ENSSSCG00000006179-10071.023ENSNBRG00000023829stau28870.608Neolamprologus_brichardi
ENSSSCG00000006179-10097.286ENSNLEG00000001342STAU210095.789Nomascus_leucogenys
ENSSSCG00000006179-9988.270ENSNLEG00000036286-9990.000Nomascus_leucogenys
ENSSSCG00000006179-7658.915ENSMEUG00000011345-6858.915Notamacropus_eugenii
ENSSSCG00000006179-10089.676ENSOPRG00000008474STAU210085.263Ochotona_princeps
ENSSSCG00000006179-10098.820ENSODEG00000003610STAU210098.747Octodon_degus
ENSSSCG00000006179-10071.212ENSONIG00000014300stau29370.578Oreochromis_niloticus
ENSSSCG00000006179-5763.918ENSOANG00000031011-9855.061Ornithorhynchus_anatinus
ENSSSCG00000006179-10098.525ENSOCUG00000013843STAU210096.217Oryctolagus_cuniculus
ENSSSCG00000006179-10070.857ENSORLG00000007943stau28470.648Oryzias_latipes
ENSSSCG00000006179-10071.048ENSORLG00020016648stau28870.648Oryzias_latipes_hni
ENSSSCG00000006179-10071.048ENSORLG00015016882stau210070.985Oryzias_latipes_hsok
ENSSSCG00000006179-10071.023ENSOMEG00000010542stau28970.599Oryzias_melastigma
ENSSSCG00000006179-9998.521ENSOGAG00000001112STAU210098.391Otolemur_garnettii
ENSSSCG00000006179-10098.525ENSOARG00000006011STAU210097.927Ovis_aries
ENSSSCG00000006179-9680.061ENSPPAG00000041507-10075.526Pan_paniscus
ENSSSCG00000006179-10098.121ENSPPAG00000034287STAU210097.652Pan_paniscus
ENSSSCG00000006179-10099.115ENSPPRG00000024814STAU210098.772Panthera_pardus
ENSSSCG00000006179-10099.115ENSPTIG00000007856STAU210098.826Panthera_tigris_altaica
ENSSSCG00000006179-10097.704ENSPTRG00000047797STAU210097.260Pan_troglodytes
ENSSSCG00000006179-8482.927ENSPTRG00000043384-9983.624Pan_troglodytes
ENSSSCG00000006179-9671.385ENSPTRG00000045302-10065.762Pan_troglodytes
ENSSSCG00000006179-10098.121ENSPANG00000021222STAU210096.316Papio_anubis
ENSSSCG00000006179-9968.842ENSPKIG00000006663stau29867.850Paramormyrops_kingsleyae
ENSSSCG00000006179-10086.301ENSPSIG00000003686STAU29585.560Pelodiscus_sinensis
ENSSSCG00000006179-10069.847ENSPMGG00000009011stau29367.986Periophthalmus_magnuspinnatus
ENSSSCG00000006179-10097.286ENSPEMG00000012104Stau210097.286Peromyscus_maniculatus_bairdii
ENSSSCG00000006179-10061.004ENSPMAG00000003826stau29359.316Petromyzon_marinus
ENSSSCG00000006179-10082.387ENSPCIG00000012872STAU29181.142Phascolarctos_cinereus
ENSSSCG00000006179-10069.101ENSPFOG00000013147stau28868.896Poecilia_formosa
ENSSSCG00000006179-8667.123ENSPLAG00000008809stau28567.230Poecilia_latipinna
ENSSSCG00000006179-5468.345ENSPLAG00000009029stau27367.845Poecilia_latipinna
ENSSSCG00000006179-10069.591ENSPMEG00000014168stau28868.896Poecilia_mexicana
ENSSSCG00000006179-10069.418ENSPREG00000017795stau28869.179Poecilia_reticulata
ENSSSCG00000006179-10090.802ENSPPYG00000018674STAU210090.461Pongo_abelii
ENSSSCG00000006179-9988.235ENSPCAG00000004679STAU210088.235Procavia_capensis
ENSSSCG00000006179-10078.808ENSPCOG00000011840STAU210078.808Propithecus_coquereli
ENSSSCG00000006179-9596.885ENSPVAG00000014575STAU210086.316Pteropus_vampyrus
ENSSSCG00000006179-10071.023ENSPNYG00000001132stau210068.484Pundamilia_nyererei
ENSSSCG00000006179-10075.781ENSPNAG00000023606stau210074.211Pygocentrus_nattereri
ENSSSCG00000006179-9795.031ENSRNOG00000042458AABR07046707.19993.478Rattus_norvegicus
ENSSSCG00000006179-10097.912ENSRBIG00000034859-10096.053Rhinopithecus_bieti
ENSSSCG00000006179-10066.372ENSRROG00000029227-10068.865Rhinopithecus_roxellana
ENSSSCG00000006179-7694.795ENSRROG00000039882-9495.592Rhinopithecus_roxellana
ENSSSCG00000006179-10098.820ENSSBOG00000032091STAU210098.239Saimiri_boliviensis_boliviensis
ENSSSCG00000006179-8178.261ENSSHAG00000012057-9178.339Sarcophilus_harrisii
ENSSSCG00000006179-10070.674ENSSFOG00015012905stau210069.580Scleropages_formosus
ENSSSCG00000006179-10071.132ENSSMAG00000016487stau29070.557Scophthalmus_maximus
ENSSSCG00000006179-10071.698ENSSDUG00000012535stau210067.007Seriola_dumerili
ENSSSCG00000006179-10071.698ENSSLDG00000007156stau210067.857Seriola_lalandi_dorsalis
ENSSSCG00000006179-6595.045ENSSARG00000009750-7079.144Sorex_araneus
ENSSSCG00000006179-10084.071ENSSPUG00000018208STAU28984.679Sphenodon_punctatus
ENSSSCG00000006179-10071.212ENSSPAG00000000291stau29568.089Stegastes_partitus
ENSSSCG00000006179-10086.301ENSTGUG00000011535STAU210085.263Taeniopygia_guttata
ENSSSCG00000006179-10070.510ENSTRUG00000001905stau210069.661Takifugu_rubripes
ENSSSCG00000006179-9963.116ENSTNIG00000008181stau29861.646Tetraodon_nigroviridis
ENSSSCG00000006179-10097.260ENSTBEG00000016245STAU210095.965Tupaia_belangeri
ENSSSCG00000006179-9598.131ENSTTRG00000009236STAU210088.947Tursiops_truncatus
ENSSSCG00000006179-10099.115ENSUMAG00000018908STAU210098.405Ursus_maritimus
ENSSSCG00000006179-10098.230ENSVPAG00000001523STAU210097.895Vicugna_pacos
ENSSSCG00000006179-10099.115ENSVVUG00000019217-10098.421Vulpes_vulpes
ENSSSCG00000006179-10074.168ENSXETG00000011826stau210071.639Xenopus_tropicalis
ENSSSCG00000006179-7278.947ENSXCOG00000007032stau28278.947Xiphophorus_couchianus
ENSSSCG00000006179-10071.345ENSXMAG00000010426stau29971.373Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us