EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSSCG00000006490 (Gene tree)
Gene ID
100153097
Gene Symbol
-
Alias
-
Full Name
SMG5%2C nonsense mediated mRNA decay factor
Gene Type
protein_coding
Species
Sus_scrofa
Status
putative
Strand
Plus strand
Length
37254 bases
Position
chr4:93770344-93807597
Accession
100153097
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSSCP00000037217EST1PF10374.91.1e-2311
ENSSSCP00000006917EST1PF10374.91.2e-2311
ENSSSCP00000033494EST1PF10374.91.2e-2311
ENSSSCP00000036948EST1PF10374.91.2e-2311
ENSSSCP00000043296EST1PF10374.91.2e-2311
ENSSSCP00000036369EST1PF10374.93.6e-1411
ENSSSCP00000037217EST1_DNA_bindPF10373.92.6e-4012
ENSSSCP00000037217EST1_DNA_bindPF10373.92.6e-4022
ENSSSCP00000006917EST1_DNA_bindPF10373.92.7e-4012
ENSSSCP00000006917EST1_DNA_bindPF10373.92.7e-4022
ENSSSCP00000036369EST1_DNA_bindPF10373.92.8e-4012
ENSSSCP00000036369EST1_DNA_bindPF10373.92.8e-4022
ENSSSCP00000033494EST1_DNA_bindPF10373.93e-4012
ENSSSCP00000033494EST1_DNA_bindPF10373.93e-4022
ENSSSCP00000036948EST1_DNA_bindPF10373.93e-4012
ENSSSCP00000036948EST1_DNA_bindPF10373.93e-4022
ENSSSCP00000043296EST1_DNA_bindPF10373.93e-4012
ENSSSCP00000043296EST1_DNA_bindPF10373.93e-4022
ENSSSCP00000037217PIN_4PF13638.63e-0511
ENSSSCP00000036369PIN_4PF13638.63.1e-0511
ENSSSCP00000033494PIN_4PF13638.63.3e-0511
ENSSSCP00000036948PIN_4PF13638.63.3e-0511
ENSSSCP00000043296PIN_4PF13638.63.3e-0511
ENSSSCP00000006917PIN_4PF13638.63.4e-0511
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSSCT00000058798-6500-ENSSSCP000000334941016 (aa)-A0A286ZPF3
ENSSSCT00000007109-4390-ENSSSCP00000006917963 (aa)-F1RP14
ENSSSCT00000051356-6215-ENSSSCP000000432961016 (aa)-A0A286ZPF3
ENSSSCT00000053261-4447XM_021089681ENSSSCP00000037217950 (aa)XP_020945340A0A287A0E6
ENSSSCT00000062237-8602XM_021089680ENSSSCP000000369481016 (aa)XP_020945339A0A286ZPF3
ENSSSCT00000061960-5984-ENSSSCP00000036369986 (aa)-A0A286ZXY4
Gene Model
Click here to download ENSSSCG00000006490's gene model file
Pathways
Pathway IDPathway NameSource
ssc03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000006490's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSSCG00000006490-5636.166ENSSSCG00000037182-6542.287
ENSSSCG00000006490-10076.947ENSSSCG00000039308-10076.453
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSSCG00000006490-10097.146ENSG00000198952SMG510097.146Homo_sapiens
ENSSSCG00000006490-10066.807ENSAPOG00000019690smg59966.994Acanthochromis_polyacanthus
ENSSSCG00000006490-10093.481ENSAMEG00000014458SMG510093.756Ailuropoda_melanoleuca
ENSSSCG00000006490-10064.513ENSACIG00000001353smg59966.667Amphilophus_citrinellus
ENSSSCG00000006490-10064.410ENSAOCG00000019483smg59367.111Amphiprion_ocellaris
ENSSSCG00000006490-10065.702ENSAPEG00000022949smg59866.833Amphiprion_percula
ENSSSCG00000006490-10065.567ENSATEG00000005348smg59966.893Anabas_testudineus
ENSSSCG00000006490-10078.230ENSAPLG00000010263SMG510078.732Anas_platyrhynchos
ENSSSCG00000006490-10097.047ENSANAG00000032899SMG510097.047Aotus_nancymaae
ENSSSCG00000006490-10064.645ENSACLG00000009311smg59966.314Astatotilapia_calliptera
ENSSSCG00000006490-9178.723ENSAMXG00000024616smg59962.135Astyanax_mexicanus
ENSSSCG00000006490-10097.146ENSBTAG00000009435SMG510097.146Bos_taurus
ENSSSCG00000006490-9944.628ENSBTAG00000021747-9943.542Bos_taurus
ENSSSCG00000006490-10097.047ENSCJAG00000005684SMG510097.047Callithrix_jacchus
ENSSSCG00000006490-10095.177ENSCAFG00000016839SMG510095.177Canis_familiaris
ENSSSCG00000006490-10095.177ENSCAFG00020006061SMG510095.177Canis_lupus_dingo
ENSSSCG00000006490-9945.388ENSCHIG00000006323-9943.683Capra_hircus
ENSSSCG00000006490-10096.949ENSCHIG00000007709SMG510096.949Capra_hircus
ENSSSCG00000006490-10096.559ENSTSYG00000004099SMG510096.559Carlito_syrichta
ENSSSCG00000006490-10075.105ENSCAPG00000003631SMG510076.635Cavia_aperea
ENSSSCG00000006490-10095.580ENSCPOG00000015696SMG510095.285Cavia_porcellus
ENSSSCG00000006490-10097.146ENSCCAG00000027409SMG510097.146Cebus_capucinus
ENSSSCG00000006490-10097.146ENSCATG00000030539SMG510097.146Cercocebus_atys
ENSSSCG00000006490-10096.365ENSCLAG00000003983SMG510096.365Chinchilla_lanigera
ENSSSCG00000006490-10097.047ENSCSAG00000002120SMG510097.047Chlorocebus_sabaeus
ENSSSCG00000006490-5492.701ENSCHOG00000008741-5792.701Choloepus_hoffmanni
ENSSSCG00000006490-10078.622ENSCPBG00000025848SMG510078.296Chrysemys_picta_bellii
ENSSSCG00000006490-9152.667ENSCING00000008706-8752.667Ciona_intestinalis
ENSSSCG00000006490-10094.822ENSCANG00000029208SMG510094.822Colobus_angolensis_palliatus
ENSSSCG00000006490-10093.026ENSCGRG00001006336Smg510092.534Cricetulus_griseus_chok1gshd
ENSSSCG00000006490-5050.507ENSCGRG00001000584-9050.000Cricetulus_griseus_chok1gshd
ENSSSCG00000006490-10092.962ENSCGRG00000005111Smg510092.649Cricetulus_griseus_crigri
ENSSSCG00000006490-10064.828ENSCSEG00000014220smg59965.622Cynoglossus_semilaevis
ENSSSCG00000006490-9961.762ENSCVAG00000000529smg59962.475Cyprinodon_variegatus
ENSSSCG00000006490-9379.433ENSDARG00000041481smg59959.548Danio_rerio
ENSSSCG00000006490-10092.421ENSDNOG00000000051SMG510092.421Dasypus_novemcinctus
ENSSSCG00000006490-9636.699ENSDNOG00000039862-10035.979Dasypus_novemcinctus
ENSSSCG00000006490-10094.853ENSDORG00000010382Smg510094.499Dipodomys_ordii
ENSSSCG00000006490-6635.484FBgn0019890Smg56235.484Drosophila_melanogaster
ENSSSCG00000006490-8797.087ENSETEG00000010336SMG58397.087Echinops_telfairi
ENSSSCG00000006490-9246.274ENSEBUG00000003739smg59847.558Eptatretus_burgeri
ENSSSCG00000006490-10097.736ENSEASG00005019122SMG510097.736Equus_asinus_asinus
ENSSSCG00000006490-10097.736ENSECAG00000001389SMG510097.736Equus_caballus
ENSSSCG00000006490-7399.020ENSEEUG00000012690SMG57599.135Erinaceus_europaeus
ENSSSCG00000006490-10065.021ENSELUG00000012585smg59965.797Esox_lucius
ENSSSCG00000006490-10095.276ENSFCAG00000011783SMG510095.280Felis_catus
ENSSSCG00000006490-6182.471ENSFALG00000001166-9982.580Ficedula_albicollis
ENSSSCG00000006490-10093.277ENSFDAG00000017388SMG510093.454Fukomys_damarensis
ENSSSCG00000006490-10062.708ENSFHEG00000013939smg59567.732Fundulus_heteroclitus
ENSSSCG00000006490-10060.960ENSGMOG00000007310smg59370.615Gadus_morhua
ENSSSCG00000006490-9978.002ENSGALG00000029918-10077.514Gallus_gallus
ENSSSCG00000006490-7476.018ENSGAFG00000021691smg59667.412Gambusia_affinis
ENSSSCG00000006490-9276.498ENSGACG00000013142smg59958.056Gasterosteus_aculeatus
ENSSSCG00000006490-10079.602ENSGAGG00000016131SMG510079.487Gopherus_agassizii
ENSSSCG00000006490-10097.047ENSGGOG00000010932SMG510097.047Gorilla_gorilla
ENSSSCG00000006490-10064.242ENSHBUG00000008654smg59965.366Haplochromis_burtoni
ENSSSCG00000006490-10093.222ENSHGLG00000019152SMG510093.418Heterocephalus_glaber_female
ENSSSCG00000006490-9093.428ENSHGLG00100015948SMG59993.647Heterocephalus_glaber_male
ENSSSCG00000006490-8674.648ENSHCOG00000010229smg58378.571Hippocampus_comes
ENSSSCG00000006490-10060.978ENSIPUG00000006624Smg59962.545Ictalurus_punctatus
ENSSSCG00000006490-10096.853ENSSTOG00000001780SMG510096.853Ictidomys_tridecemlineatus
ENSSSCG00000006490-10093.229ENSJJAG00000022763Smg510092.934Jaculus_jaculus
ENSSSCG00000006490-9270.227ENSKMAG00000014586smg59961.511Kryptolebias_marmoratus
ENSSSCG00000006490-10065.570ENSLBEG00000002145smg59966.248Labrus_bergylta
ENSSSCG00000006490-10065.549ENSLACG00000010521SMG510065.014Latimeria_chalumnae
ENSSSCG00000006490-10096.211ENSLAFG00000006241SMG510095.374Loxodonta_africana
ENSSSCG00000006490-10097.047ENSMFAG00000045357SMG510097.047Macaca_fascicularis
ENSSSCG00000006490-10097.047ENSMMUG00000000090SMG510097.047Macaca_mulatta
ENSSSCG00000006490-10096.949ENSMNEG00000044425SMG510096.949Macaca_nemestrina
ENSSSCG00000006490-9992.275ENSMLEG00000041192SMG510090.784Mandrillus_leucophaeus
ENSSSCG00000006490-10060.019ENSMAMG00000010683smg510059.546Mastacembelus_armatus
ENSSSCG00000006490-10062.729ENSMZEG00005015815smg59964.818Maylandia_zebra
ENSSSCG00000006490-6758.788ENSMZEG00005016543smg510059.276Maylandia_zebra
ENSSSCG00000006490-5048.583ENSMAUG00000000043-8848.984Mesocricetus_auratus
ENSSSCG00000006490-10091.945ENSMAUG00000010381Smg510091.552Mesocricetus_auratus
ENSSSCG00000006490-10097.368ENSMICG00000002257SMG510097.343Microcebus_murinus
ENSSSCG00000006490-10091.961ENSMOCG00000016590Smg510091.275Microtus_ochrogaster
ENSSSCG00000006490-5646.630ENSMOCG00000008423-8649.900Microtus_ochrogaster
ENSSSCG00000006490-9958.491ENSMMOG00000017199smg59959.569Mola_mola
ENSSSCG00000006490-9934.990ENSMODG00000004511-9933.960Monodelphis_domestica
ENSSSCG00000006490-7939.108ENSMODG00000004735-8639.200Monodelphis_domestica
ENSSSCG00000006490-8789.865ENSMODG00000016901SMG59890.315Monodelphis_domestica
ENSSSCG00000006490-9341.899ENSMODG00000004532-8343.034Monodelphis_domestica
ENSSSCG00000006490-8037.280ENSMODG00000010675-8437.401Monodelphis_domestica
ENSSSCG00000006490-10059.906ENSMALG00000010375smg59369.626Monopterus_albus
ENSSSCG00000006490-10092.927MGP_CAROLIEiJ_G0025163Smg510098.883Mus_caroli
ENSSSCG00000006490-10093.026ENSMUSG00000001415Smg59998.883Mus_musculus
ENSSSCG00000006490-10092.760MGP_PahariEiJ_G0026606Smg510098.883Mus_pahari
ENSSSCG00000006490-10092.829MGP_SPRETEiJ_G0026104Smg510098.883Mus_spretus
ENSSSCG00000006490-10093.895ENSMPUG00000004546SMG510093.895Mustela_putorius_furo
ENSSSCG00000006490-10095.793ENSMLUG00000008518SMG510095.793Myotis_lucifugus
ENSSSCG00000006490-10094.297ENSNGAG00000020706Smg510094.297Nannospalax_galili
ENSSSCG00000006490-9843.015ENSNGAG00000012101-9844.500Nannospalax_galili
ENSSSCG00000006490-9763.380ENSNBRG00000004332smg59864.422Neolamprologus_brichardi
ENSSSCG00000006490-10096.850ENSNLEG00000012439SMG510096.850Nomascus_leucogenys
ENSSSCG00000006490-10088.004ENSMEUG00000012834SMG510087.119Notamacropus_eugenii
ENSSSCG00000006490-10094.783ENSOPRG00000009152SMG510094.783Ochotona_princeps
ENSSSCG00000006490-10095.669ENSODEG00000012237SMG510095.669Octodon_degus
ENSSSCG00000006490-10059.381ENSONIG00000008632smg59957.993Oreochromis_niloticus
ENSSSCG00000006490-10096.421ENSOCUG00000012886SMG510096.573Oryctolagus_cuniculus
ENSSSCG00000006490-9140.497ENSOCUG00000023338-9940.173Oryctolagus_cuniculus
ENSSSCG00000006490-9077.381ENSORLG00000016239smg59961.883Oryzias_latipes
ENSSSCG00000006490-10063.485ENSORLG00020013127smg59965.918Oryzias_latipes_hni
ENSSSCG00000006490-10063.806ENSORLG00015019014smg59966.407Oryzias_latipes_hsok
ENSSSCG00000006490-8260.065ENSOMEG00000021330smg59260.385Oryzias_melastigma
ENSSSCG00000006490-10095.579ENSOGAG00000004966SMG510095.571Otolemur_garnettii
ENSSSCG00000006490-10097.047ENSOARG00000005778SMG510097.047Ovis_aries
ENSSSCG00000006490-9945.031ENSOARG00000011963-9943.695Ovis_aries
ENSSSCG00000006490-10096.949ENSPPAG00000011996SMG510096.949Pan_paniscus
ENSSSCG00000006490-10095.053ENSPPRG00000011901SMG510095.262Panthera_pardus
ENSSSCG00000006490-9987.872ENSPTIG00000007892SMG59689.108Panthera_tigris_altaica
ENSSSCG00000006490-10097.146ENSPTRG00000049282-10097.146Pan_troglodytes
ENSSSCG00000006490-10097.146ENSPTRG00000023925SMG510097.146Pan_troglodytes
ENSSSCG00000006490-10097.146ENSPANG00000011201SMG510097.146Papio_anubis
ENSSSCG00000006490-10064.736ENSPKIG00000009402smg59966.146Paramormyrops_kingsleyae
ENSSSCG00000006490-10079.835ENSPSIG00000015198SMG510080.575Pelodiscus_sinensis
ENSSSCG00000006490-10059.825ENSPMGG00000010465smg59960.534Periophthalmus_magnuspinnatus
ENSSSCG00000006490-5946.060ENSPEMG00000010022-9545.017Peromyscus_maniculatus_bairdii
ENSSSCG00000006490-10093.026ENSPEMG00000001819Smg510092.534Peromyscus_maniculatus_bairdii
ENSSSCG00000006490-9758.049ENSPMAG00000000410smg59950.336Petromyzon_marinus
ENSSSCG00000006490-10089.489ENSPCIG00000018938SMG510089.882Phascolarctos_cinereus
ENSSSCG00000006490-9370.588ENSPFOG00000010191smg59962.724Poecilia_formosa
ENSSSCG00000006490-9370.588ENSPLAG00000009332smg59962.545Poecilia_latipinna
ENSSSCG00000006490-10065.507ENSPMEG00000014105smg59965.966Poecilia_mexicana
ENSSSCG00000006490-9370.588ENSPREG00000017713smg59962.276Poecilia_reticulata
ENSSSCG00000006490-10097.244ENSPPYG00000000723SMG510097.244Pongo_abelii
ENSSSCG00000006490-7499.415ENSPCAG00000008412SMG58196.685Procavia_capensis
ENSSSCG00000006490-10097.263ENSPCOG00000004741SMG510097.244Propithecus_coquereli
ENSSSCG00000006490-9595.960ENSPVAG00000016748SMG59295.960Pteropus_vampyrus
ENSSSCG00000006490-10058.736ENSPNYG00000013397smg59961.116Pundamilia_nyererei
ENSSSCG00000006490-10061.442ENSPNAG00000028363smg59959.128Pygocentrus_nattereri
ENSSSCG00000006490-10092.927ENSRNOG00000019590Smg510092.338Rattus_norvegicus
ENSSSCG00000006490-10096.850ENSRBIG00000027428SMG510096.850Rhinopithecus_bieti
ENSSSCG00000006490-10096.752ENSRROG00000030035SMG510096.752Rhinopithecus_roxellana
ENSSSCG00000006490-10097.441ENSSBOG00000033339SMG510097.441Saimiri_boliviensis_boliviensis
ENSSSCG00000006490-8739.895ENSSHAG00000000561-8639.895Sarcophilus_harrisii
ENSSSCG00000006490-6342.623ENSSHAG00000000935-8240.854Sarcophilus_harrisii
ENSSSCG00000006490-10034.436ENSSHAG00000009572-8042.752Sarcophilus_harrisii
ENSSSCG00000006490-10088.715ENSSHAG00000014163SMG510089.590Sarcophilus_harrisii
ENSSSCG00000006490-10065.699ENSSFOG00015024175smg59966.244Scleropages_formosus
ENSSSCG00000006490-10060.000ENSSMAG00000013059smg59961.586Scophthalmus_maximus
ENSSSCG00000006490-10060.374ENSSDUG00000007122smg59371.395Seriola_dumerili
ENSSSCG00000006490-10060.694ENSSLDG00000011418smg59372.066Seriola_lalandi_dorsalis
ENSSSCG00000006490-9081.788ENSSARG00000012484SMG510081.788Sorex_araneus
ENSSSCG00000006490-10078.419ENSSPUG00000002260SMG510077.406Sphenodon_punctatus
ENSSSCG00000006490-9177.198ENSSPAG00000014266smg59865.403Stegastes_partitus
ENSSSCG00000006490-10079.833ENSTGUG00000003748-10080.469Taeniopygia_guttata
ENSSSCG00000006490-9375.115ENSTRUG00000012580smg59276.102Takifugu_rubripes
ENSSSCG00000006490-10064.566ENSTNIG00000010303smg59965.049Tetraodon_nigroviridis
ENSSSCG00000006490-61100.000ENSTBEG00000002777SMG561100.000Tupaia_belangeri
ENSSSCG00000006490-10096.421ENSTTRG00000001401SMG510093.307Tursiops_truncatus
ENSSSCG00000006490-10094.488ENSUAMG00000013721SMG510094.488Ursus_americanus
ENSSSCG00000006490-9893.179ENSUMAG00000018041SMG59793.179Ursus_maritimus
ENSSSCG00000006490-9791.930ENSVPAG00000009446SMG59988.295Vicugna_pacos
ENSSSCG00000006490-10095.177ENSVVUG00000005887SMG510095.177Vulpes_vulpes
ENSSSCG00000006490-8266.204ENSXETG00000033791SMG59965.574Xenopus_tropicalis
ENSSSCG00000006490-7570.136ENSXCOG00000004379smg59569.231Xiphophorus_couchianus
ENSSSCG00000006490-10065.841ENSXMAG00000013499smg59965.863Xiphophorus_maculatus

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