EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000006564 (Gene tree)
Gene ID: 100154707
Gene Symbol: -
Alias: -
Full Name: RAB13%2C member RAS oncogene family
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 4843 bases
Position: chr4:95705091-95709933
Accession: 100154707
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000006998	MMR_HSR1	PF01926.23	0.0002	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000007191	-	1226	XM_013997080	ENSSSCP00000006998	203 (aa)	XP_013852534	F1RFW5

Gene Model

Click here to download ENSSSCG00000006564's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000006564's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000006564	-	81	44.242	ENSSSCG00000005514	RAB14	77	44.242
ENSSSCG00000006564	-	84	54.118	ENSSSCG00000002280	RAB15	80	54.118
ENSSSCG00000006564	-	96	35.678	ENSSSCG00000011615	RAB7A	96	35.678
ENSSSCG00000006564	-	88	38.947	ENSSSCG00000017769	RAB34	73	38.947
ENSSSCG00000006564	-	79	36.810	ENSSSCG00000027443	MRAS	78	36.810
ENSSSCG00000006564	-	99	52.239	ENSSSCG00000008359	RAB1A	99	52.551
ENSSSCG00000006564	-	79	40.123	ENSSSCG00000026969	KRAS	85	40.123
ENSSSCG00000006564	-	78	39.506	ENSSSCG00000010048	RAB36	61	39.506
ENSSSCG00000006564	-	79	38.272	ENSSSCG00000032477	NRAS	85	38.272
ENSSSCG00000006564	-	95	37.374	ENSSSCG00000032672	RAB9B	97	37.374
ENSSSCG00000006564	-	95	38.614	ENSSSCG00000020711	RAB33B	88	38.614
ENSSSCG00000006564	-	96	38.462	ENSSSCG00000036503	RAB6B	92	38.462
ENSSSCG00000006564	-	86	46.629	ENSSSCG00000024233	RAB39B	84	46.629
ENSSSCG00000006564	-	93	37.915	ENSSSCG00000030432	-	95	37.915
ENSSSCG00000006564	-	79	39.506	ENSSSCG00000031513	HRAS	85	39.506
ENSSSCG00000006564	-	81	47.273	ENSSSCG00000013600	RAB11B	76	47.273
ENSSSCG00000006564	-	78	43.671	ENSSSCG00000014828	RAB6A	76	43.671
ENSSSCG00000006564	-	95	40.415	ENSSSCG00000037653	RAB5A	89	40.415
ENSSSCG00000006564	-	86	43.750	ENSSSCG00000028655	RAB18	85	43.750
ENSSSCG00000006564	-	94	39.474	ENSSSCG00000039186	RAB25	89	39.474
ENSSSCG00000006564	-	83	47.929	ENSSSCG00000006232	RAB2A	84	48.734
ENSSSCG00000006564	-	91	36.508	ENSSSCG00000007513	RAB22A	97	36.508
ENSSSCG00000006564	-	63	30.496	ENSSSCG00000035304	ARFRP1	68	30.496
ENSSSCG00000006564	-	80	38.824	ENSSSCG00000012123	RAB9A	83	38.824
ENSSSCG00000006564	-	81	32.121	ENSSSCG00000016434	RHEB	87	32.121
ENSSSCG00000006564	-	58	31.356	ENSSSCG00000025041	-	76	31.356
ENSSSCG00000006564	-	88	37.222	ENSSSCG00000029539	RAB23	79	37.209
ENSSSCG00000006564	-	84	55.294	ENSSSCG00000033876	RAB35	93	50.794
ENSSSCG00000006564	-	92	54.301	ENSSSCG00000012954	RAB1B	99	54.301
ENSSSCG00000006564	-	84	51.744	ENSSSCG00000038026	RAB12	70	51.744
ENSSSCG00000006564	-	83	48.214	ENSSSCG00000029544	RAB2B	81	49.045
ENSSSCG00000006564	-	83	30.286	ENSSSCG00000008577	DNAJC27	90	30.189
ENSSSCG00000006564	-	67	30.882	ENSSSCG00000016593	ARF5	72	30.882
ENSSSCG00000006564	-	95	37.500	ENSSSCG00000032467	RAB5C	89	37.500
ENSSSCG00000006564	-	91	41.919	ENSSSCG00000012658	RAB33A	72	41.919
ENSSSCG00000006564	-	80	49.383	ENSSSCG00000014900	RAB30	80	49.383
ENSSSCG00000006564	-	81	47.273	ENSSSCG00000032312	RAB11A	76	47.273

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000006564	-	100	98.522	ENSG00000143545	RAB13	100	98.522	Homo_sapiens
ENSSSCG00000006564	-	99	75.124	ENSACIG00000008584	rab13	97	75.124	Amphilophus_citrinellus
ENSSSCG00000006564	-	100	97.044	ENSANAG00000030247	-	100	97.044	Aotus_nancymaae
ENSSSCG00000006564	-	99	78.218	ENSAMXG00000030712	rab13	99	78.218	Astyanax_mexicanus
ENSSSCG00000006564	-	100	98.030	ENSBTAG00000017604	RAB13	100	98.030	Bos_taurus
ENSSSCG00000006564	-	80	47.239	WBGene00019317	K02E10.1	75	47.239	Caenorhabditis_elegans
ENSSSCG00000006564	-	100	97.537	ENSCJAG00000009933	-	100	97.537	Callithrix_jacchus
ENSSSCG00000006564	-	100	98.030	ENSCHIG00000022271	-	100	98.030	Capra_hircus
ENSSSCG00000006564	-	99	92.079	ENSCPOG00000011491	-	99	92.079	Cavia_porcellus
ENSSSCG00000006564	-	100	98.030	ENSCCAG00000028502	-	100	98.030	Cebus_capucinus
ENSSSCG00000006564	-	100	98.522	ENSCATG00000041779	-	100	98.522	Cercocebus_atys
ENSSSCG00000006564	-	100	91.133	ENSCLAG00000006603	-	100	91.133	Chinchilla_lanigera
ENSSSCG00000006564	-	100	98.522	ENSCANG00000036573	-	100	98.522	Colobus_angolensis_palliatus
ENSSSCG00000006564	-	100	95.074	ENSCGRG00001021505	Rab13	100	95.074	Cricetulus_griseus_chok1gshd
ENSSSCG00000006564	-	100	95.074	ENSCGRG00000012126	Rab13	100	95.074	Cricetulus_griseus_crigri
ENSSSCG00000006564	-	99	75.980	ENSCSEG00000002358	rab13	99	75.980	Cynoglossus_semilaevis
ENSSSCG00000006564	-	99	78.713	ENSDARG00000034771	rab13	99	78.713	Danio_rerio
ENSSSCG00000006564	-	100	94.581	ENSDORG00000001591	Rab13	100	94.581	Dipodomys_ordii
ENSSSCG00000006564	-	100	98.030	ENSEASG00005000683	-	100	98.030	Equus_asinus_asinus
ENSSSCG00000006564	-	100	98.030	ENSECAG00000016551	RAB13	100	98.030	Equus_caballus
ENSSSCG00000006564	-	99	89.604	ENSEEUG00000001233	-	99	89.604	Erinaceus_europaeus
ENSSSCG00000006564	-	99	77.073	ENSELUG00000012801	rab13	99	77.073	Esox_lucius
ENSSSCG00000006564	-	100	91.626	ENSFCAG00000045269	-	100	91.626	Felis_catus
ENSSSCG00000006564	-	65	96.970	ENSFDAG00000014469	-	100	96.970	Fukomys_damarensis
ENSSSCG00000006564	-	99	75.743	ENSFHEG00000021221	rab13	99	81.868	Fundulus_heteroclitus
ENSSSCG00000006564	-	99	74.757	ENSGACG00000011925	rab13	96	78.462	Gasterosteus_aculeatus
ENSSSCG00000006564	-	99	82.178	ENSGAGG00000000742	-	99	82.178	Gopherus_agassizii
ENSSSCG00000006564	-	100	98.522	ENSGGOG00000023693	RAB13	100	98.522	Gorilla_gorilla
ENSSSCG00000006564	-	100	89.655	ENSHGLG00000008749	RAB13	100	89.655	Heterocephalus_glaber_female
ENSSSCG00000006564	-	100	89.655	ENSHGLG00100013608	RAB13	100	89.655	Heterocephalus_glaber_male
ENSSSCG00000006564	-	99	73.039	ENSHCOG00000007440	rab13	95	86.127	Hippocampus_comes
ENSSSCG00000006564	-	99	76.500	ENSIPUG00000003199	rab13	99	76.500	Ictalurus_punctatus
ENSSSCG00000006564	-	100	97.044	ENSSTOG00000011222	-	100	97.044	Ictidomys_tridecemlineatus
ENSSSCG00000006564	-	100	93.103	ENSJJAG00000010575	Rab13	100	93.103	Jaculus_jaculus
ENSSSCG00000006564	-	99	75.000	ENSKMAG00000001908	rab13	99	75.000	Kryptolebias_marmoratus
ENSSSCG00000006564	-	99	76.471	ENSLBEG00000026779	rab13	99	76.471	Labrus_bergylta
ENSSSCG00000006564	-	85	77.907	ENSLACG00000008103	-	97	77.907	Latimeria_chalumnae
ENSSSCG00000006564	-	100	98.522	ENSMFAG00000041018	RAB13	100	98.522	Macaca_fascicularis
ENSSSCG00000006564	-	100	98.522	ENSMNEG00000028951	-	100	98.522	Macaca_nemestrina
ENSSSCG00000006564	-	100	98.522	ENSMLEG00000042247	-	100	98.522	Mandrillus_leucophaeus
ENSSSCG00000006564	-	99	74.272	ENSMAMG00000014602	rab13	99	74.272	Mastacembelus_armatus
ENSSSCG00000006564	-	100	94.089	ENSMAUG00000015713	Rab13	100	94.089	Mesocricetus_auratus
ENSSSCG00000006564	-	100	95.567	ENSMICG00000010340	-	100	95.567	Microcebus_murinus
ENSSSCG00000006564	-	100	95.074	ENSMOCG00000021448	Rab13	100	95.074	Microtus_ochrogaster
ENSSSCG00000006564	-	99	92.079	ENSMODG00000017295	-	84	92.079	Monodelphis_domestica
ENSSSCG00000006564	-	100	92.118	MGP_CAROLIEiJ_G0025227	Rab13	100	92.118	Mus_caroli
ENSSSCG00000006564	-	100	91.133	ENSMUSG00000027935	Rab13	100	91.133	Mus_musculus
ENSSSCG00000006564	-	99	91.584	MGP_PahariEiJ_G0026671	Rab13	99	91.584	Mus_pahari
ENSSSCG00000006564	-	100	94.581	ENSNGAG00000010309	Rab13	100	94.581	Nannospalax_galili
ENSSSCG00000006564	-	99	74.146	ENSNBRG00000004124	rab13	99	74.146	Neolamprologus_brichardi
ENSSSCG00000006564	-	100	98.522	ENSNLEG00000028944	-	100	98.522	Nomascus_leucogenys
ENSSSCG00000006564	-	100	91.667	ENSMEUG00000009667	-	100	91.667	Notamacropus_eugenii
ENSSSCG00000006564	-	63	97.638	ENSODEG00000012634	-	100	97.638	Octodon_degus
ENSSSCG00000006564	-	100	89.655	ENSODEG00000010443	-	100	89.655	Octodon_degus
ENSSSCG00000006564	-	99	75.743	ENSONIG00000006340	rab13	99	75.743	Oreochromis_niloticus
ENSSSCG00000006564	-	87	96.045	ENSOCUG00000006286	-	99	96.045	Oryctolagus_cuniculus
ENSSSCG00000006564	-	95	80.729	ENSOMEG00000008210	rab13	99	75.728	Oryzias_melastigma
ENSSSCG00000006564	-	99	93.564	ENSOGAG00000016969	-	99	93.564	Otolemur_garnettii
ENSSSCG00000006564	-	100	98.522	ENSPPAG00000028435	-	100	98.522	Pan_paniscus
ENSSSCG00000006564	-	100	91.626	ENSPPRG00000008865	-	100	91.626	Panthera_pardus
ENSSSCG00000006564	-	100	98.522	ENSPTRG00000001370	RAB13	100	98.522	Pan_troglodytes
ENSSSCG00000006564	-	100	98.522	ENSPANG00000004479	-	100	98.522	Papio_anubis
ENSSSCG00000006564	-	99	75.743	ENSPMGG00000007680	rab13	99	75.743	Periophthalmus_magnuspinnatus
ENSSSCG00000006564	-	53	97.222	ENSPEMG00000017353	-	81	97.222	Peromyscus_maniculatus_bairdii
ENSSSCG00000006564	-	100	92.157	ENSPCIG00000029350	-	100	92.157	Phascolarctos_cinereus
ENSSSCG00000006564	-	95	74.112	ENSPLAG00000005832	RAB13	93	83.815	Poecilia_latipinna
ENSSSCG00000006564	-	90	80.328	ENSPREG00000017567	rab13	99	74.257	Poecilia_reticulata
ENSSSCG00000006564	-	100	98.522	ENSPPYG00000000790	-	100	98.522	Pongo_abelii
ENSSSCG00000006564	-	100	96.552	ENSPCOG00000012189	-	100	96.552	Propithecus_coquereli
ENSSSCG00000006564	-	100	95.074	ENSPVAG00000011095	-	100	95.074	Pteropus_vampyrus
ENSSSCG00000006564	-	92	82.258	ENSPNAG00000004189	rab13	95	82.258	Pygocentrus_nattereri
ENSSSCG00000006564	-	100	92.611	ENSRNOG00000016733	Rab13	100	92.611	Rattus_norvegicus
ENSSSCG00000006564	-	100	98.030	ENSRBIG00000008552	-	100	98.030	Rhinopithecus_bieti
ENSSSCG00000006564	-	100	98.030	ENSRROG00000036885	-	100	98.030	Rhinopithecus_roxellana
ENSSSCG00000006564	-	100	97.537	ENSSBOG00000020342	-	100	97.537	Saimiri_boliviensis_boliviensis
ENSSSCG00000006564	-	100	91.176	ENSSHAG00000011866	-	100	91.176	Sarcophilus_harrisii
ENSSSCG00000006564	-	99	76.238	ENSTRUG00000024177	rab13	99	76.238	Takifugu_rubripes
ENSSSCG00000006564	-	100	95.567	ENSTBEG00000012734	-	100	95.567	Tupaia_belangeri
ENSSSCG00000006564	-	100	99.015	ENSTTRG00000011183	-	100	99.015	Tursiops_truncatus
ENSSSCG00000006564	-	70	80.420	ENSXETG00000020729	rab13	99	77.019	Xenopus_tropicalis
ENSSSCG00000006564	-	85	82.659	ENSXCOG00000019533	rab13	93	82.659	Xiphophorus_couchianus