EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000006665 (Gene tree)
Gene ID: 100157814
Gene Symbol: -
Alias: -
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 7410 bases
Position: chr4:99123658-99131067
Accession: 100157814
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000007108	RRM_1	PF00076.22	4.8e-39	1	2
ENSSSCP00000007108	RRM_1	PF00076.22	4.8e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000007303	-	3343	XM_001926489	ENSSSCP00000007108	424 (aa)	XP_001926524	F1SDG0

Gene Model

Click here to download ENSSSCG00000006665's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000006665's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000006665	-	53	36.508	ENSSSCG00000007382	PABPC1L	60	36.508
ENSSSCG00000006665	-	70	39.344	ENSSSCG00000006063	PABPC1	68	39.344
ENSSSCG00000006665	-	59	32.447	ENSSSCG00000009067	PABPC4L	99	34.074
ENSSSCG00000006665	-	85	66.575	ENSSSCG00000039440	-	79	66.049

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000006665	-	100	99.528	ENSG00000143368	SF3B4	100	100.000	Homo_sapiens
ENSSSCG00000006665	-	57	96.667	ENSAPOG00000017647	sf3b4	77	80.745	Acanthochromis_polyacanthus
ENSSSCG00000006665	-	100	99.764	ENSAMEG00000010073	SF3B4	100	99.764	Ailuropoda_melanoleuca
ENSSSCG00000006665	-	57	96.667	ENSAOCG00000019801	sf3b4	77	80.745	Amphiprion_ocellaris
ENSSSCG00000006665	-	57	96.667	ENSAPEG00000010365	sf3b4	77	80.745	Amphiprion_percula
ENSSSCG00000006665	-	57	96.250	ENSATEG00000012844	sf3b4	76	80.312	Anabas_testudineus
ENSSSCG00000006665	-	62	96.198	ENSACAG00000010019	SF3B4	90	91.384	Anolis_carolinensis
ENSSSCG00000006665	-	100	99.528	ENSANAG00000031025	SF3B4	100	99.528	Aotus_nancymaae
ENSSSCG00000006665	-	57	95.833	ENSACLG00000014260	sf3b4	76	80.251	Astatotilapia_calliptera
ENSSSCG00000006665	-	57	96.250	ENSAMXG00000008282	sf3b4	77	79.257	Astyanax_mexicanus
ENSSSCG00000006665	-	91	96.354	ENSBTAG00000012793	-	93	96.354	Bos_taurus
ENSSSCG00000006665	-	100	99.764	ENSBTAG00000012495	SF3B4	100	99.764	Bos_taurus
ENSSSCG00000006665	-	90	81.787	ENSCJAG00000042351	SF3B4	87	81.787	Callithrix_jacchus
ENSSSCG00000006665	-	100	99.292	ENSCAFG00000011617	SF3B4	100	99.292	Canis_familiaris
ENSSSCG00000006665	-	100	99.292	ENSCAFG00020019775	SF3B4	100	99.292	Canis_lupus_dingo
ENSSSCG00000006665	-	100	99.764	ENSCHIG00000025663	-	100	99.764	Capra_hircus
ENSSSCG00000006665	-	100	99.528	ENSTSYG00000009295	SF3B4	100	99.528	Carlito_syrichta
ENSSSCG00000006665	-	100	99.528	ENSCPOG00000008267	SF3B4	100	99.528	Cavia_porcellus
ENSSSCG00000006665	-	100	86.985	ENSCCAG00000021751	-	69	93.519	Cebus_capucinus
ENSSSCG00000006665	-	95	85.572	ENSCCAG00000019823	-	77	86.503	Cebus_capucinus
ENSSSCG00000006665	-	100	99.528	ENSCATG00000033114	SF3B4	100	99.528	Cercocebus_atys
ENSSSCG00000006665	-	100	99.528	ENSCLAG00000015851	SF3B4	100	99.528	Chinchilla_lanigera
ENSSSCG00000006665	-	100	99.528	ENSCSAG00000018129	SF3B4	100	99.528	Chlorocebus_sabaeus
ENSSSCG00000006665	-	99	83.726	ENSCPBG00000008041	SF3B4	91	91.667	Chrysemys_picta_bellii
ENSSSCG00000006665	-	51	90.698	ENSCING00000002337	-	57	90.521	Ciona_intestinalis
ENSSSCG00000006665	-	100	99.528	ENSCANG00000035579	SF3B4	100	99.528	Colobus_angolensis_palliatus
ENSSSCG00000006665	-	100	99.528	ENSCGRG00001003590	Sf3b4	100	99.528	Cricetulus_griseus_chok1gshd
ENSSSCG00000006665	-	100	99.528	ENSCGRG00000016914	Sf3b4	100	99.528	Cricetulus_griseus_crigri
ENSSSCG00000006665	-	54	98.678	ENSCSEG00000015258	sf3b4	65	78.638	Cynoglossus_semilaevis
ENSSSCG00000006665	-	57	96.250	ENSDARG00000018574	sf3b4	77	79.814	Danio_rerio
ENSSSCG00000006665	-	98	96.875	ENSDNOG00000048908	-	99	96.875	Dasypus_novemcinctus
ENSSSCG00000006665	-	97	80.872	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSSSCG00000006665	-	100	99.764	ENSDORG00000016366	Sf3b4	100	99.764	Dipodomys_ordii
ENSSSCG00000006665	-	52	86.425	FBgn0015818	Spx	61	88.152	Drosophila_melanogaster
ENSSSCG00000006665	-	76	92.593	ENSETEG00000008963	SF3B4	76	92.593	Echinops_telfairi
ENSSSCG00000006665	-	100	99.764	ENSEASG00005001477	SF3B4	100	99.764	Equus_asinus_asinus
ENSSSCG00000006665	-	100	99.764	ENSECAG00000024737	SF3B4	100	99.764	Equus_caballus
ENSSSCG00000006665	-	100	99.764	ENSFCAG00000010106	SF3B4	100	99.764	Felis_catus
ENSSSCG00000006665	-	100	99.528	ENSFDAG00000009286	SF3B4	100	99.528	Fukomys_damarensis
ENSSSCG00000006665	-	54	96.957	ENSGMOG00000002519	sf3b4	67	97.368	Gadus_morhua
ENSSSCG00000006665	-	99	87.943	ENSGALG00000013352	SF3B4	90	90.601	Gallus_gallus
ENSSSCG00000006665	-	63	92.453	ENSGAFG00000010181	sf3b4	58	97.807	Gambusia_affinis
ENSSSCG00000006665	-	99	83.491	ENSGAGG00000025055	SF3B4	79	91.406	Gopherus_agassizii
ENSSSCG00000006665	-	100	73.349	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
ENSSSCG00000006665	-	100	99.528	ENSGGOG00000004761	SF3B4	100	99.528	Gorilla_gorilla
ENSSSCG00000006665	-	57	95.833	ENSHBUG00000002028	sf3b4	76	80.251	Haplochromis_burtoni
ENSSSCG00000006665	-	100	99.528	ENSHGLG00000012360	SF3B4	100	99.528	Heterocephalus_glaber_female
ENSSSCG00000006665	-	100	98.349	ENSHGLG00100008533	SF3B4	100	98.349	Heterocephalus_glaber_male
ENSSSCG00000006665	-	50	99.531	ENSHCOG00000003014	sf3b4	57	96.491	Hippocampus_comes
ENSSSCG00000006665	-	57	96.667	ENSIPUG00000012242	Sf3b4	77	80.186	Ictalurus_punctatus
ENSSSCG00000006665	-	100	99.764	ENSSTOG00000000684	-	100	99.764	Ictidomys_tridecemlineatus
ENSSSCG00000006665	-	76	84.052	ENSJJAG00000022500	Sf3b4	95	84.052	Jaculus_jaculus
ENSSSCG00000006665	-	56	96.203	ENSKMAG00000008154	sf3b4	58	98.246	Kryptolebias_marmoratus
ENSSSCG00000006665	-	55	97.425	ENSLBEG00000026818	sf3b4	57	98.246	Labrus_bergylta
ENSSSCG00000006665	-	57	95.473	ENSLACG00000004436	SF3B4	87	86.562	Latimeria_chalumnae
ENSSSCG00000006665	-	57	95.885	ENSLOCG00000009048	sf3b4	75	86.834	Lepisosteus_oculatus
ENSSSCG00000006665	-	100	99.765	ENSLAFG00000008531	SF3B4	100	99.765	Loxodonta_africana
ENSSSCG00000006665	-	92	71.066	ENSMFAG00000039067	-	76	68.387	Macaca_fascicularis
ENSSSCG00000006665	-	100	99.528	ENSMFAG00000042395	SF3B4	100	99.528	Macaca_fascicularis
ENSSSCG00000006665	-	100	99.528	ENSMMUG00000007256	SF3B4	100	99.528	Macaca_mulatta
ENSSSCG00000006665	-	92	70.558	ENSMNEG00000031526	-	76	68.065	Macaca_nemestrina
ENSSSCG00000006665	-	100	99.528	ENSMNEG00000031839	SF3B4	100	99.528	Macaca_nemestrina
ENSSSCG00000006665	-	100	99.528	ENSMLEG00000038667	SF3B4	100	99.528	Mandrillus_leucophaeus
ENSSSCG00000006665	-	57	97.083	ENSMAMG00000014692	sf3b4	77	80.186	Mastacembelus_armatus
ENSSSCG00000006665	-	57	95.833	ENSMZEG00005026741	sf3b4	76	80.251	Maylandia_zebra
ENSSSCG00000006665	-	99	87.234	ENSMGAG00000000653	SF3B4	91	90.339	Meleagris_gallopavo
ENSSSCG00000006665	-	100	99.528	ENSMAUG00000015266	Sf3b4	100	99.528	Mesocricetus_auratus
ENSSSCG00000006665	-	100	99.764	ENSMICG00000044961	SF3B4	100	99.764	Microcebus_murinus
ENSSSCG00000006665	-	100	99.528	ENSMOCG00000013658	-	100	99.528	Microtus_ochrogaster
ENSSSCG00000006665	-	98	94.458	ENSMOCG00000014155	-	100	94.458	Microtus_ochrogaster
ENSSSCG00000006665	-	54	97.826	ENSMMOG00000018032	sf3b4	58	97.807	Mola_mola
ENSSSCG00000006665	-	100	99.057	ENSMODG00000018767	SF3B4	100	99.057	Monodelphis_domestica
ENSSSCG00000006665	-	54	97.797	ENSMALG00000006174	sf3b4	76	78.019	Monopterus_albus
ENSSSCG00000006665	-	100	99.292	MGP_CAROLIEiJ_G0025365	Sf3b4	100	99.292	Mus_caroli
ENSSSCG00000006665	-	100	99.528	ENSMUSG00000068856	Sf3b4	100	99.528	Mus_musculus
ENSSSCG00000006665	-	100	99.528	MGP_PahariEiJ_G0026809	Sf3b4	100	99.528	Mus_pahari
ENSSSCG00000006665	-	100	99.528	MGP_SPRETEiJ_G0026309	Sf3b4	100	99.528	Mus_spretus
ENSSSCG00000006665	-	100	99.764	ENSMPUG00000005563	SF3B4	100	99.764	Mustela_putorius_furo
ENSSSCG00000006665	-	100	99.528	ENSMLUG00000010789	SF3B4	100	99.528	Myotis_lucifugus
ENSSSCG00000006665	-	100	99.764	ENSNGAG00000016337	Sf3b4	100	99.764	Nannospalax_galili
ENSSSCG00000006665	-	57	96.250	ENSNBRG00000013865	sf3b4	76	80.564	Neolamprologus_brichardi
ENSSSCG00000006665	-	100	76.415	ENSNLEG00000000537	-	82	84.568	Nomascus_leucogenys
ENSSSCG00000006665	-	100	69.860	ENSNLEG00000009693	-	100	69.860	Nomascus_leucogenys
ENSSSCG00000006665	-	81	100.000	ENSMEUG00000003272	SF3B4	82	100.000	Notamacropus_eugenii
ENSSSCG00000006665	-	99	97.150	ENSOPRG00000010808	SF3B4	99	97.150	Ochotona_princeps
ENSSSCG00000006665	-	75	86.751	ENSODEG00000003597	-	79	86.751	Octodon_degus
ENSSSCG00000006665	-	56	95.359	ENSONIG00000002730	sf3b4	76	78.997	Oreochromis_niloticus
ENSSSCG00000006665	-	99	57.907	ENSOANG00000004768	-	50	81.776	Ornithorhynchus_anatinus
ENSSSCG00000006665	-	100	99.764	ENSOCUG00000004614	SF3B4	100	99.764	Oryctolagus_cuniculus
ENSSSCG00000006665	-	55	96.983	ENSORLG00000003062	sf3b4	59	97.807	Oryzias_latipes
ENSSSCG00000006665	-	100	99.764	ENSOGAG00000006265	SF3B4	100	99.764	Otolemur_garnettii
ENSSSCG00000006665	-	86	78.571	ENSOARG00000007368	-	55	83.482	Ovis_aries
ENSSSCG00000006665	-	100	99.764	ENSOARG00000020718	-	100	99.764	Ovis_aries
ENSSSCG00000006665	-	100	81.604	ENSPPAG00000030024	-	78	82.407	Pan_paniscus
ENSSSCG00000006665	-	100	99.528	ENSPPAG00000040904	SF3B4	100	99.528	Pan_paniscus
ENSSSCG00000006665	-	100	99.764	ENSPPRG00000007384	SF3B4	100	99.764	Panthera_pardus
ENSSSCG00000006665	-	100	99.292	ENSPTIG00000014530	SF3B4	100	99.292	Panthera_tigris_altaica
ENSSSCG00000006665	-	100	78.774	ENSPTRG00000049727	-	78	84.877	Pan_troglodytes
ENSSSCG00000006665	-	100	99.528	ENSPTRG00000001243	SF3B4	100	99.528	Pan_troglodytes
ENSSSCG00000006665	-	100	99.528	ENSPANG00000005126	SF3B4	100	99.528	Papio_anubis
ENSSSCG00000006665	-	55	97.425	ENSPKIG00000020669	sf3b4	82	78.834	Paramormyrops_kingsleyae
ENSSSCG00000006665	-	66	75.714	ENSPSIG00000009565	SF3B4	88	74.912	Pelodiscus_sinensis
ENSSSCG00000006665	-	100	99.528	ENSPEMG00000017568	Sf3b4	100	99.528	Peromyscus_maniculatus_bairdii
ENSSSCG00000006665	-	61	88.716	ENSPMAG00000007842	-	50	95.283	Petromyzon_marinus
ENSSSCG00000006665	-	100	99.057	ENSPCIG00000008765	SF3B4	100	99.057	Phascolarctos_cinereus
ENSSSCG00000006665	-	64	90.476	ENSPFOG00000005754	sf3b4	78	79.012	Poecilia_formosa
ENSSSCG00000006665	-	64	90.476	ENSPLAG00000001401	sf3b4	85	79.012	Poecilia_latipinna
ENSSSCG00000006665	-	64	90.476	ENSPREG00000011076	sf3b4	57	97.807	Poecilia_reticulata
ENSSSCG00000006665	-	63	96.635	ENSPCAG00000000392	SF3B4	69	96.635	Procavia_capensis
ENSSSCG00000006665	-	100	99.764	ENSPCOG00000015399	SF3B4	100	99.764	Propithecus_coquereli
ENSSSCG00000006665	-	100	99.764	ENSPVAG00000014171	SF3B4	100	99.764	Pteropus_vampyrus
ENSSSCG00000006665	-	57	95.833	ENSPNYG00000012700	sf3b4	76	80.251	Pundamilia_nyererei
ENSSSCG00000006665	-	57	96.667	ENSPNAG00000000686	sf3b4	79	79.321	Pygocentrus_nattereri
ENSSSCG00000006665	-	100	99.528	ENSRNOG00000021181	Sf3b4	100	99.528	Rattus_norvegicus
ENSSSCG00000006665	-	100	99.528	ENSRBIG00000043392	SF3B4	100	99.528	Rhinopithecus_bieti
ENSSSCG00000006665	-	92	71.465	ENSRROG00000028213	-	91	67.647	Rhinopithecus_roxellana
ENSSSCG00000006665	-	100	99.528	ENSRROG00000029366	SF3B4	100	99.528	Rhinopithecus_roxellana
ENSSSCG00000006665	-	100	72.642	ENSSBOG00000025174	-	73	79.257	Saimiri_boliviensis_boliviensis
ENSSSCG00000006665	-	100	99.292	ENSSBOG00000012310	-	100	99.292	Saimiri_boliviensis_boliviensis
ENSSSCG00000006665	-	100	96.462	ENSSHAG00000004043	SF3B4	100	98.688	Sarcophilus_harrisii
ENSSSCG00000006665	-	56	96.624	ENSSFOG00015008864	sf3b4	76	78.947	Scleropages_formosus
ENSSSCG00000006665	-	57	96.667	ENSSMAG00000006837	sf3b4	77	80.124	Scophthalmus_maximus
ENSSSCG00000006665	-	57	97.083	ENSSDUG00000012064	sf3b4	76	80.186	Seriola_dumerili
ENSSSCG00000006665	-	57	97.083	ENSSLDG00000014226	sf3b4	76	79.876	Seriola_lalandi_dorsalis
ENSSSCG00000006665	-	57	97.500	ENSSPAG00000019219	sf3b4	76	80.805	Stegastes_partitus
ENSSSCG00000006665	-	56	97.034	ENSTGUG00000004470	SF3B4	90	98.246	Taeniopygia_guttata
ENSSSCG00000006665	-	54	96.916	ENSTRUG00000004516	sf3b4	57	96.491	Takifugu_rubripes
ENSSSCG00000006665	-	54	96.957	ENSTNIG00000009156	sf3b4	58	97.368	Tetraodon_nigroviridis
ENSSSCG00000006665	-	100	99.764	ENSTTRG00000005217	SF3B4	100	99.764	Tursiops_truncatus
ENSSSCG00000006665	-	100	99.764	ENSUAMG00000022468	SF3B4	100	99.764	Ursus_americanus
ENSSSCG00000006665	-	100	98.821	ENSUMAG00000003802	SF3B4	100	98.821	Ursus_maritimus
ENSSSCG00000006665	-	97	99.757	ENSVPAG00000008152	SF3B4	100	99.757	Vicugna_pacos
ENSSSCG00000006665	-	65	96.377	ENSVVUG00000022697	-	58	96.377	Vulpes_vulpes
ENSSSCG00000006665	-	99	92.584	ENSVVUG00000007732	-	100	92.584	Vulpes_vulpes
ENSSSCG00000006665	-	55	92.308	ENSXETG00000011038	sf3b4	53	100.000	Xenopus_tropicalis
ENSSSCG00000006665	-	54	97.391	ENSXCOG00000019895	sf3b4	58	97.807	Xiphophorus_couchianus
ENSSSCG00000006665	-	54	97.391	ENSXMAG00000003772	sf3b4	58	97.807	Xiphophorus_maculatus