EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000006865 (Gene tree)
Gene ID: 100154102
Gene Symbol: RTCA
Alias: RTCD1
Full Name: RNA 3'-terminal phosphate cyclase
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 22919 bases
Position: chr4:117852766-117875684
Accession: 100154102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000007319	RTC	PF01137.21	2.7e-88	1	1
ENSSSCP00000007319	RTC_insert	PF05189.13	1.3e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000007518	-	1587	-	ENSSSCP00000007319	366 (aa)	-	F1S564

Gene Model

Click here to download ENSSSCG00000006865's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000006865's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000006865	RTCA	100	94.809	ENSG00000137996	RTCA	100	97.959	Homo_sapiens
ENSSSCG00000006865	RTCA	99	72.299	ENSAPOG00000001345	rtca	98	72.299	Acanthochromis_polyacanthus
ENSSSCG00000006865	RTCA	73	95.911	ENSAMEG00000008855	RTCA	100	95.911	Ailuropoda_melanoleuca
ENSSSCG00000006865	RTCA	99	72.022	ENSACIG00000019643	rtca	99	72.022	Amphilophus_citrinellus
ENSSSCG00000006865	RTCA	100	71.585	ENSAOCG00000014979	rtca	99	71.585	Amphiprion_ocellaris
ENSSSCG00000006865	RTCA	100	71.585	ENSAPEG00000006945	rtca	99	71.585	Amphiprion_percula
ENSSSCG00000006865	RTCA	100	70.219	ENSATEG00000006315	rtca	100	70.219	Anabas_testudineus
ENSSSCG00000006865	RTCA	96	81.921	ENSAPLG00000015430	RTCA	100	81.921	Anas_platyrhynchos
ENSSSCG00000006865	RTCA	100	93.989	ENSANAG00000025446	RTCA	100	93.989	Aotus_nancymaae
ENSSSCG00000006865	RTCA	100	70.765	ENSACLG00000020770	rtca	99	70.765	Astatotilapia_calliptera
ENSSSCG00000006865	RTCA	100	72.678	ENSAMXG00000043271	rtca	100	72.678	Astyanax_mexicanus
ENSSSCG00000006865	RTCA	100	97.814	ENSBTAG00000006321	RTCA	100	97.814	Bos_taurus
ENSSSCG00000006865	RTCA	100	94.262	ENSCJAG00000003398	RTCA	100	94.262	Callithrix_jacchus
ENSSSCG00000006865	RTCA	100	96.448	ENSCAFG00000020010	RTCA	68	96.448	Canis_familiaris
ENSSSCG00000006865	RTCA	100	96.448	ENSCAFG00020011528	RTCA	57	96.448	Canis_lupus_dingo
ENSSSCG00000006865	RTCA	100	97.541	ENSCHIG00000018937	RTCA	100	97.541	Capra_hircus
ENSSSCG00000006865	RTCA	100	93.716	ENSTSYG00000011305	RTCA	100	93.716	Carlito_syrichta
ENSSSCG00000006865	RTCA	100	93.989	ENSCCAG00000021844	RTCA	100	93.989	Cebus_capucinus
ENSSSCG00000006865	RTCA	100	91.821	ENSCATG00000019364	RTCA	100	94.498	Cercocebus_atys
ENSSSCG00000006865	RTCA	87	94.006	ENSCLAG00000006125	RTCA	100	94.006	Chinchilla_lanigera
ENSSSCG00000006865	RTCA	100	95.082	ENSCSAG00000001509	RTCA	100	95.082	Chlorocebus_sabaeus
ENSSSCG00000006865	RTCA	100	94.536	ENSCHOG00000005211	RTCA	100	94.536	Choloepus_hoffmanni
ENSSSCG00000006865	RTCA	100	84.426	ENSCPBG00000026658	RTCA	100	84.426	Chrysemys_picta_bellii
ENSSSCG00000006865	RTCA	98	56.111	ENSCING00000007875	-	98	56.111	Ciona_intestinalis
ENSSSCG00000006865	RTCA	98	55.000	ENSCSAVG00000007269	-	98	55.000	Ciona_savignyi
ENSSSCG00000006865	RTCA	100	94.809	ENSCANG00000040106	RTCA	100	94.809	Colobus_angolensis_palliatus
ENSSSCG00000006865	RTCA	73	94.052	ENSCGRG00001013163	Rtca	85	94.052	Cricetulus_griseus_chok1gshd
ENSSSCG00000006865	RTCA	99	69.315	ENSCSEG00000000530	rtca	98	69.315	Cynoglossus_semilaevis
ENSSSCG00000006865	RTCA	100	59.563	ENSCVAG00000021809	rtca	100	59.563	Cyprinodon_variegatus
ENSSSCG00000006865	RTCA	100	72.951	ENSDARG00000002215	rtca	100	72.951	Danio_rerio
ENSSSCG00000006865	RTCA	100	95.082	ENSDNOG00000000456	RTCA	100	95.082	Dasypus_novemcinctus
ENSSSCG00000006865	RTCA	100	95.082	ENSDORG00000005448	Rtca	100	95.082	Dipodomys_ordii
ENSSSCG00000006865	RTCA	98	38.827	FBgn0025630	Rtca	98	38.827	Drosophila_melanogaster
ENSSSCG00000006865	RTCA	95	54.520	ENSEBUG00000008556	rtca	97	54.520	Eptatretus_burgeri
ENSSSCG00000006865	RTCA	100	96.448	ENSEASG00005015926	RTCA	100	96.448	Equus_asinus_asinus
ENSSSCG00000006865	RTCA	100	96.448	ENSECAG00000019831	RTCA	100	96.448	Equus_caballus
ENSSSCG00000006865	RTCA	91	83.526	ENSEEUG00000001165	RTCA	100	83.526	Erinaceus_europaeus
ENSSSCG00000006865	RTCA	99	72.022	ENSELUG00000003741	rtca	99	72.022	Esox_lucius
ENSSSCG00000006865	RTCA	100	96.995	ENSFCAG00000024460	RTCA	100	96.995	Felis_catus
ENSSSCG00000006865	RTCA	93	82.647	ENSFALG00000002443	RTCA	91	82.647	Ficedula_albicollis
ENSSSCG00000006865	RTCA	100	94.809	ENSFDAG00000012070	-	100	94.809	Fukomys_damarensis
ENSSSCG00000006865	RTCA	98	72.376	ENSFDAG00000016084	-	100	72.376	Fukomys_damarensis
ENSSSCG00000006865	RTCA	59	70.233	ENSFHEG00000002868	rtca	96	68.142	Fundulus_heteroclitus
ENSSSCG00000006865	RTCA	100	68.852	ENSGMOG00000013264	rtca	100	68.852	Gadus_morhua
ENSSSCG00000006865	RTCA	100	84.699	ENSGALG00000005277	RTCA	100	84.699	Gallus_gallus
ENSSSCG00000006865	RTCA	100	71.858	ENSGAFG00000011853	rtca	99	71.858	Gambusia_affinis
ENSSSCG00000006865	RTCA	100	69.672	ENSGACG00000013497	rtca	100	69.672	Gasterosteus_aculeatus
ENSSSCG00000006865	RTCA	80	85.324	ENSGAGG00000023306	RTCA	100	85.324	Gopherus_agassizii
ENSSSCG00000006865	RTCA	100	93.989	ENSGGOG00000044018	-	100	93.989	Gorilla_gorilla
ENSSSCG00000006865	RTCA	100	94.809	ENSGGOG00000009546	-	100	94.809	Gorilla_gorilla
ENSSSCG00000006865	RTCA	100	70.492	ENSHBUG00000002114	rtca	99	70.492	Haplochromis_burtoni
ENSSSCG00000006865	RTCA	100	93.716	ENSHGLG00000002617	RTCA	100	93.716	Heterocephalus_glaber_female
ENSSSCG00000006865	RTCA	100	93.716	ENSHGLG00100006056	RTCA	100	93.716	Heterocephalus_glaber_male
ENSSSCG00000006865	RTCA	100	64.754	ENSHCOG00000020628	rtca	89	64.754	Hippocampus_comes
ENSSSCG00000006865	RTCA	100	72.951	ENSIPUG00000024803	rtca	100	72.951	Ictalurus_punctatus
ENSSSCG00000006865	RTCA	100	83.106	ENSSTOG00000033099	-	100	83.106	Ictidomys_tridecemlineatus
ENSSSCG00000006865	RTCA	100	87.705	ENSSTOG00000013528	-	100	87.705	Ictidomys_tridecemlineatus
ENSSSCG00000006865	RTCA	100	67.760	ENSJJAG00000016178	Rtca	100	67.760	Jaculus_jaculus
ENSSSCG00000006865	RTCA	99	72.853	ENSKMAG00000006651	rtca	98	72.853	Kryptolebias_marmoratus
ENSSSCG00000006865	RTCA	99	69.806	ENSLBEG00000028971	rtca	99	69.806	Labrus_bergylta
ENSSSCG00000006865	RTCA	88	69.470	ENSLBEG00000002448	-	99	69.470	Labrus_bergylta
ENSSSCG00000006865	RTCA	100	78.142	ENSLACG00000013666	RTCA	100	78.142	Latimeria_chalumnae
ENSSSCG00000006865	RTCA	100	72.951	ENSLOCG00000000093	rtca	99	72.951	Lepisosteus_oculatus
ENSSSCG00000006865	RTCA	100	94.536	ENSLAFG00000001473	RTCA	100	94.536	Loxodonta_africana
ENSSSCG00000006865	RTCA	100	95.082	ENSMFAG00000034132	RTCA	100	95.082	Macaca_fascicularis
ENSSSCG00000006865	RTCA	100	94.536	ENSMMUG00000019105	RTCA	100	94.536	Macaca_mulatta
ENSSSCG00000006865	RTCA	84	94.498	ENSMNEG00000037163	RTCA	100	94.498	Macaca_nemestrina
ENSSSCG00000006865	RTCA	100	78.689	ENSMLEG00000042151	RTCA	100	78.689	Mandrillus_leucophaeus
ENSSSCG00000006865	RTCA	100	73.224	ENSMAMG00000016536	rtca	100	73.224	Mastacembelus_armatus
ENSSSCG00000006865	RTCA	100	70.765	ENSMZEG00005017945	rtca	99	70.765	Maylandia_zebra
ENSSSCG00000006865	RTCA	87	83.386	ENSMGAG00000006892	RTCA	99	83.386	Meleagris_gallopavo
ENSSSCG00000006865	RTCA	100	92.896	ENSMAUG00000008488	Rtca	100	92.896	Mesocricetus_auratus
ENSSSCG00000006865	RTCA	84	95.793	ENSMICG00000008643	RTCA	100	95.793	Microcebus_murinus
ENSSSCG00000006865	RTCA	100	93.716	ENSMOCG00000016660	Rtca	100	93.716	Microtus_ochrogaster
ENSSSCG00000006865	RTCA	84	72.168	ENSMMOG00000007750	rtca	100	72.168	Mola_mola
ENSSSCG00000006865	RTCA	100	90.984	ENSMODG00000003557	RTCA	100	90.984	Monodelphis_domestica
ENSSSCG00000006865	RTCA	100	72.951	ENSMALG00000020844	rtca	100	72.951	Monopterus_albus
ENSSSCG00000006865	RTCA	100	92.896	MGP_CAROLIEiJ_G0025565	Rtca	100	92.958	Mus_caroli
ENSSSCG00000006865	RTCA	100	92.350	ENSMUSG00000000339	Rtca	100	92.958	Mus_musculus
ENSSSCG00000006865	RTCA	100	92.623	MGP_PahariEiJ_G0027011	Rtca	100	92.623	Mus_pahari
ENSSSCG00000006865	RTCA	100	92.623	MGP_SPRETEiJ_G0026515	Rtca	100	92.623	Mus_spretus
ENSSSCG00000006865	RTCA	100	96.995	ENSMPUG00000012119	RTCA	100	96.995	Mustela_putorius_furo
ENSSSCG00000006865	RTCA	100	88.828	ENSMLUG00000009922	RTCA	100	88.828	Myotis_lucifugus
ENSSSCG00000006865	RTCA	100	92.623	ENSNGAG00000011540	Rtca	99	92.623	Nannospalax_galili
ENSSSCG00000006865	RTCA	100	70.765	ENSNBRG00000003062	rtca	99	70.765	Neolamprologus_brichardi
ENSSSCG00000006865	RTCA	100	94.809	ENSNLEG00000031426	RTCA	100	94.809	Nomascus_leucogenys
ENSSSCG00000006865	RTCA	58	95.122	ENSMEUG00000010030	-	77	78.788	Notamacropus_eugenii
ENSSSCG00000006865	RTCA	73	90.706	ENSOPRG00000012092	RTCA	71	90.706	Ochotona_princeps
ENSSSCG00000006865	RTCA	95	94.253	ENSODEG00000006990	RTCA	96	94.302	Octodon_degus
ENSSSCG00000006865	RTCA	100	70.492	ENSONIG00000007753	rtca	99	70.492	Oreochromis_niloticus
ENSSSCG00000006865	RTCA	87	88.959	ENSOANG00000012055	RTCA	98	88.959	Ornithorhynchus_anatinus
ENSSSCG00000006865	RTCA	100	95.902	ENSOCUG00000014247	RTCA	100	95.902	Oryctolagus_cuniculus
ENSSSCG00000006865	RTCA	100	71.038	ENSORLG00000013605	rtca	100	71.038	Oryzias_latipes
ENSSSCG00000006865	RTCA	100	71.038	ENSORLG00020001904	rtca	100	71.038	Oryzias_latipes_hni
ENSSSCG00000006865	RTCA	100	71.038	ENSORLG00015021064	rtca	100	71.038	Oryzias_latipes_hsok
ENSSSCG00000006865	RTCA	100	71.585	ENSOMEG00000000756	rtca	100	71.585	Oryzias_melastigma
ENSSSCG00000006865	RTCA	100	85.519	ENSOGAG00000005627	RTCA	100	85.519	Otolemur_garnettii
ENSSSCG00000006865	RTCA	87	96.541	ENSOARG00000018122	RTCA	100	96.541	Ovis_aries
ENSSSCG00000006865	RTCA	100	91.293	ENSPPAG00000035119	RTCA	100	94.175	Pan_paniscus
ENSSSCG00000006865	RTCA	100	96.721	ENSPPRG00000000350	RTCA	100	96.721	Panthera_pardus
ENSSSCG00000006865	RTCA	100	96.721	ENSPTIG00000012816	RTCA	100	96.721	Panthera_tigris_altaica
ENSSSCG00000006865	RTCA	100	91.293	ENSPTRG00000001004	RTCA	100	94.175	Pan_troglodytes
ENSSSCG00000006865	RTCA	100	94.809	ENSPANG00000000346	RTCA	100	94.809	Papio_anubis
ENSSSCG00000006865	RTCA	100	74.044	ENSPKIG00000001653	rtca	100	74.044	Paramormyrops_kingsleyae
ENSSSCG00000006865	RTCA	100	84.973	ENSPSIG00000011408	RTCA	100	84.973	Pelodiscus_sinensis
ENSSSCG00000006865	RTCA	100	93.169	ENSPEMG00000018582	Rtca	100	93.169	Peromyscus_maniculatus_bairdii
ENSSSCG00000006865	RTCA	100	58.038	ENSPMAG00000009110	rtca	100	58.038	Petromyzon_marinus
ENSSSCG00000006865	RTCA	100	91.803	ENSPCIG00000007684	RTCA	100	91.803	Phascolarctos_cinereus
ENSSSCG00000006865	RTCA	100	72.207	ENSPFOG00000004824	rtca	100	72.207	Poecilia_formosa
ENSSSCG00000006865	RTCA	100	72.404	ENSPLAG00000011753	rtca	99	72.404	Poecilia_latipinna
ENSSSCG00000006865	RTCA	100	72.404	ENSPMEG00000020469	rtca	99	72.404	Poecilia_mexicana
ENSSSCG00000006865	RTCA	100	73.224	ENSPREG00000001365	rtca	99	73.224	Poecilia_reticulata
ENSSSCG00000006865	RTCA	100	94.809	ENSPPYG00000001115	RTCA	100	94.809	Pongo_abelii
ENSSSCG00000006865	RTCA	100	91.257	ENSPCAG00000005076	RTCA	100	91.257	Procavia_capensis
ENSSSCG00000006865	RTCA	100	96.175	ENSPCOG00000005603	RTCA	100	96.175	Propithecus_coquereli
ENSSSCG00000006865	RTCA	100	91.029	ENSPVAG00000009478	RTCA	100	91.029	Pteropus_vampyrus
ENSSSCG00000006865	RTCA	100	70.765	ENSPNYG00000004722	rtca	99	70.765	Pundamilia_nyererei
ENSSSCG00000006865	RTCA	100	72.404	ENSPNAG00000022270	rtca	100	72.404	Pygocentrus_nattereri
ENSSSCG00000006865	RTCA	100	93.443	ENSRNOG00000014575	Rtca	100	93.443	Rattus_norvegicus
ENSSSCG00000006865	RTCA	100	91.029	ENSRBIG00000041180	RTCA	100	93.528	Rhinopithecus_bieti
ENSSSCG00000006865	RTCA	100	94.262	ENSRROG00000024929	RTCA	100	94.262	Rhinopithecus_roxellana
ENSSSCG00000006865	RTCA	100	93.989	ENSSBOG00000028626	RTCA	100	93.989	Saimiri_boliviensis_boliviensis
ENSSSCG00000006865	RTCA	100	91.803	ENSSHAG00000001758	RTCA	100	91.803	Sarcophilus_harrisii
ENSSSCG00000006865	RTCA	98	69.722	ENSSMAG00000014680	rtca	97	69.722	Scophthalmus_maximus
ENSSSCG00000006865	RTCA	98	71.667	ENSSDUG00000015585	rtca	97	71.667	Seriola_dumerili
ENSSSCG00000006865	RTCA	96	72.080	ENSSLDG00000018985	rtca	95	72.080	Seriola_lalandi_dorsalis
ENSSSCG00000006865	RTCA	87	86.751	ENSSARG00000013993	RTCA	100	86.751	Sorex_araneus
ENSSSCG00000006865	RTCA	100	70.765	ENSSPAG00000011938	rtca	99	70.765	Stegastes_partitus
ENSSSCG00000006865	RTCA	100	83.607	ENSTGUG00000005154	RTCA	100	83.607	Taeniopygia_guttata
ENSSSCG00000006865	RTCA	100	71.311	ENSTRUG00000008799	rtca	100	71.311	Takifugu_rubripes
ENSSSCG00000006865	RTCA	100	72.404	ENSTNIG00000004725	rtca	100	72.404	Tetraodon_nigroviridis
ENSSSCG00000006865	RTCA	59	80.909	ENSTBEG00000000943	RTCA	82	67.227	Tupaia_belangeri
ENSSSCG00000006865	RTCA	100	93.404	ENSTTRG00000015327	RTCA	100	93.404	Tursiops_truncatus
ENSSSCG00000006865	RTCA	94	93.878	ENSUAMG00000017265	RTCA	96	93.878	Ursus_americanus
ENSSSCG00000006865	RTCA	100	95.902	ENSUMAG00000007881	RTCA	100	95.902	Ursus_maritimus
ENSSSCG00000006865	RTCA	87	87.697	ENSVPAG00000001039	RTCA	84	87.697	Vicugna_pacos
ENSSSCG00000006865	RTCA	100	96.175	ENSVVUG00000022041	RTCA	68	96.175	Vulpes_vulpes
ENSSSCG00000006865	RTCA	99	67.030	ENSXETG00000031661	RTCA	99	67.030	Xenopus_tropicalis
ENSSSCG00000006865	RTCA	100	62.568	ENSXCOG00000008002	rtca	100	62.568	Xiphophorus_couchianus
ENSSSCG00000006865	RTCA	100	71.858	ENSXMAG00000005482	rtca	99	71.858	Xiphophorus_maculatus