EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000006869 (Gene tree)
Gene ID: 102167932
Gene Symbol: TRMT13
Alias: CCDC76|FLJ10287|FLJ11219
Full Name: tRNA methyltransferase 13 homolog
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 24755 bases
Position: chr4:117961116-117985870
Accession: 102167932
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000007323	TRM13	PF05206.14	4.6e-92	1	1
ENSSSCP00000035073	TRM13	PF05206.14	5.3e-92	1	1
ENSSSCP00000007323	zf-U11-48K	PF05253.12	4.4e-09	1	1
ENSSSCP00000035073	zf-U11-48K	PF05253.12	4.7e-09	1	1
ENSSSCP00000007323	zf-TRM13_CCCH	PF11722.8	7.6e-13	1	1
ENSSSCP00000035073	zf-TRM13_CCCH	PF11722.8	8e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000057662	TRMT13-201	3507	XM_021090151	ENSSSCP00000035073	481 (aa)	XP_020945810	A0A286ZTX2
ENSSSCT00000007522	TRMT13-202	1725	-	ENSSSCP00000007323	460 (aa)	-	F1S560

Gene Model

Click here to download ENSSSCG00000006869's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000006869's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000006869	TRMT13	100	91.268	ENSG00000122435	TRMT13	100	91.268	Homo_sapiens
ENSSSCG00000006869	TRMT13	96	48.594	ENSAPOG00000015131	trmt13	99	48.795	Acanthochromis_polyacanthus
ENSSSCG00000006869	TRMT13	100	92.516	ENSAMEG00000008917	TRMT13	100	92.516	Ailuropoda_melanoleuca
ENSSSCG00000006869	TRMT13	97	51.695	ENSACIG00000005804	trmt13	94	58.621	Amphilophus_citrinellus
ENSSSCG00000006869	TRMT13	96	49.304	ENSAOCG00000023585	trmt13	99	49.304	Amphiprion_ocellaris
ENSSSCG00000006869	TRMT13	96	49.503	ENSAPEG00000004025	trmt13	99	49.503	Amphiprion_percula
ENSSSCG00000006869	TRMT13	99	51.633	ENSATEG00000006597	trmt13	99	51.020	Anabas_testudineus
ENSSSCG00000006869	TRMT13	88	68.779	ENSAPLG00000014924	TRMT13	99	68.779	Anas_platyrhynchos
ENSSSCG00000006869	TRMT13	96	65.011	ENSACAG00000003498	TRMT13	98	65.011	Anolis_carolinensis
ENSSSCG00000006869	TRMT13	100	91.476	ENSANAG00000019525	TRMT13	100	92.661	Aotus_nancymaae
ENSSSCG00000006869	TRMT13	96	53.700	ENSACLG00000020018	trmt13	99	53.700	Astatotilapia_calliptera
ENSSSCG00000006869	TRMT13	96	53.928	ENSAMXG00000017963	trmt13	98	54.316	Astyanax_mexicanus
ENSSSCG00000006869	TRMT13	100	93.139	ENSBTAG00000015781	TRMT13	100	93.139	Bos_taurus
ENSSSCG00000006869	TRMT13	100	89.397	ENSCJAG00000000200	TRMT13	99	92.661	Callithrix_jacchus
ENSSSCG00000006869	TRMT13	68	93.631	ENSCAFG00000020021	TRMT13	99	93.631	Canis_familiaris
ENSSSCG00000006869	TRMT13	57	94.505	ENSCAFG00020011572	TRMT13	95	93.818	Canis_lupus_dingo
ENSSSCG00000006869	TRMT13	100	93.347	ENSCHIG00000015395	TRMT13	100	93.347	Capra_hircus
ENSSSCG00000006869	TRMT13	98	81.356	ENSTSYG00000010811	TRMT13	98	88.889	Carlito_syrichta
ENSSSCG00000006869	TRMT13	74	69.972	ENSCAPG00000009085	TRMT13	100	70.538	Cavia_aperea
ENSSSCG00000006869	TRMT13	100	88.150	ENSCPOG00000000694	TRMT13	100	88.150	Cavia_porcellus
ENSSSCG00000006869	TRMT13	100	91.476	ENSCCAG00000023772	TRMT13	100	91.743	Cebus_capucinus
ENSSSCG00000006869	TRMT13	100	90.852	ENSCATG00000033556	TRMT13	100	91.743	Cercocebus_atys
ENSSSCG00000006869	TRMT13	89	83.607	ENSCLAG00000008220	TRMT13	100	84.543	Chinchilla_lanigera
ENSSSCG00000006869	TRMT13	100	91.476	ENSCSAG00000001506	TRMT13	100	91.476	Chlorocebus_sabaeus
ENSSSCG00000006869	TRMT13	100	69.647	ENSCPBG00000026671	TRMT13	100	69.647	Chrysemys_picta_bellii
ENSSSCG00000006869	TRMT13	100	91.684	ENSCANG00000034659	TRMT13	100	92.661	Colobus_angolensis_palliatus
ENSSSCG00000006869	TRMT13	99	84.823	ENSCGRG00001021601	Trmt13	99	84.823	Cricetulus_griseus_chok1gshd
ENSSSCG00000006869	TRMT13	56	81.712	ENSCGRG00000000093	-	99	81.712	Cricetulus_griseus_crigri
ENSSSCG00000006869	TRMT13	97	49.781	ENSCSEG00000000591	trmt13	98	49.781	Cynoglossus_semilaevis
ENSSSCG00000006869	TRMT13	96	48.529	ENSCVAG00000017342	trmt13	94	49.790	Cyprinodon_variegatus
ENSSSCG00000006869	TRMT13	95	56.897	ENSDARG00000102846	trmt13	96	56.897	Danio_rerio
ENSSSCG00000006869	TRMT13	57	89.130	ENSDNOG00000001710	TRMT13	84	89.130	Dasypus_novemcinctus
ENSSSCG00000006869	TRMT13	100	86.071	ENSDORG00000015808	Trmt13	99	86.071	Dipodomys_ordii
ENSSSCG00000006869	TRMT13	96	30.898	FBgn0037435	CG18048	95	30.898	Drosophila_melanogaster
ENSSSCG00000006869	TRMT13	99	76.618	ENSETEG00000005819	TRMT13	99	76.618	Echinops_telfairi
ENSSSCG00000006869	TRMT13	95	44.946	ENSEBUG00000014444	trmt13	97	44.946	Eptatretus_burgeri
ENSSSCG00000006869	TRMT13	100	93.763	ENSEASG00005015918	TRMT13	100	93.763	Equus_asinus_asinus
ENSSSCG00000006869	TRMT13	100	93.347	ENSECAG00000022626	TRMT13	100	93.347	Equus_caballus
ENSSSCG00000006869	TRMT13	79	81.329	ENSEEUG00000000294	TRMT13	80	81.329	Erinaceus_europaeus
ENSSSCG00000006869	TRMT13	98	55.789	ENSELUG00000003803	trmt13	99	55.556	Esox_lucius
ENSSSCG00000006869	TRMT13	100	93.347	ENSFCAG00000030618	TRMT13	100	96.330	Felis_catus
ENSSSCG00000006869	TRMT13	99	66.109	ENSFALG00000002424	TRMT13	99	66.109	Ficedula_albicollis
ENSSSCG00000006869	TRMT13	99	89.916	ENSFDAG00000006342	TRMT13	99	89.916	Fukomys_damarensis
ENSSSCG00000006869	TRMT13	76	53.719	ENSFHEG00000022954	trmt13	97	52.632	Fundulus_heteroclitus
ENSSSCG00000006869	TRMT13	95	49.011	ENSGMOG00000013223	trmt13	100	49.663	Gadus_morhua
ENSSSCG00000006869	TRMT13	95	66.813	ENSGALG00000005290	TRMT13	98	65.817	Gallus_gallus
ENSSSCG00000006869	TRMT13	75	50.798	ENSGAFG00000001577	trmt13	81	50.798	Gambusia_affinis
ENSSSCG00000006869	TRMT13	98	49.791	ENSGACG00000013428	trmt13	97	51.398	Gasterosteus_aculeatus
ENSSSCG00000006869	TRMT13	100	70.539	ENSGAGG00000023303	TRMT13	99	74.545	Gopherus_agassizii
ENSSSCG00000006869	TRMT13	100	91.060	ENSGGOG00000005616	TRMT13	100	91.060	Gorilla_gorilla
ENSSSCG00000006869	TRMT13	96	54.123	ENSHBUG00000007754	trmt13	99	54.123	Haplochromis_burtoni
ENSSSCG00000006869	TRMT13	99	90.336	ENSHGLG00000002164	TRMT13	99	90.336	Heterocephalus_glaber_female
ENSSSCG00000006869	TRMT13	99	90.336	ENSHGLG00100001618	TRMT13	99	90.336	Heterocephalus_glaber_male
ENSSSCG00000006869	TRMT13	96	48.069	ENSHCOG00000020553	trmt13	98	48.069	Hippocampus_comes
ENSSSCG00000006869	TRMT13	96	56.156	ENSIPUG00000024787	trmt13	98	56.103	Ictalurus_punctatus
ENSSSCG00000006869	TRMT13	100	92.723	ENSSTOG00000013483	TRMT13	100	92.723	Ictidomys_tridecemlineatus
ENSSSCG00000006869	TRMT13	100	87.318	ENSJJAG00000018012	Trmt13	100	87.318	Jaculus_jaculus
ENSSSCG00000006869	TRMT13	67	49.367	ENSKMAG00000007639	trmt13	92	49.673	Kryptolebias_marmoratus
ENSSSCG00000006869	TRMT13	96	50.524	ENSLBEG00000020238	trmt13	99	50.837	Labrus_bergylta
ENSSSCG00000006869	TRMT13	98	60.465	ENSLACG00000013153	TRMT13	99	60.465	Latimeria_chalumnae
ENSSSCG00000006869	TRMT13	96	58.442	ENSLOCG00000000418	trmt13	97	58.874	Lepisosteus_oculatus
ENSSSCG00000006869	TRMT13	80	89.189	ENSLAFG00000002383	TRMT13	100	89.189	Loxodonta_africana
ENSSSCG00000006869	TRMT13	100	91.268	ENSMFAG00000034681	TRMT13	100	92.661	Macaca_fascicularis
ENSSSCG00000006869	TRMT13	100	91.268	ENSMMUG00000004243	TRMT13	100	92.661	Macaca_mulatta
ENSSSCG00000006869	TRMT13	100	91.268	ENSMNEG00000036102	TRMT13	100	92.661	Macaca_nemestrina
ENSSSCG00000006869	TRMT13	100	90.852	ENSMLEG00000034258	TRMT13	100	91.743	Mandrillus_leucophaeus
ENSSSCG00000006869	TRMT13	96	52.539	ENSMAMG00000016597	trmt13	98	52.539	Mastacembelus_armatus
ENSSSCG00000006869	TRMT13	96	53.488	ENSMZEG00005020959	trmt13	99	53.488	Maylandia_zebra
ENSSSCG00000006869	TRMT13	89	67.213	ENSMGAG00000006970	TRMT13	100	67.213	Meleagris_gallopavo
ENSSSCG00000006869	TRMT13	99	83.750	ENSMAUG00000010448	Trmt13	99	83.750	Mesocricetus_auratus
ENSSSCG00000006869	TRMT13	100	92.723	ENSMICG00000005283	TRMT13	100	92.723	Microcebus_murinus
ENSSSCG00000006869	TRMT13	99	81.042	ENSMOCG00000019914	Trmt13	99	81.042	Microtus_ochrogaster
ENSSSCG00000006869	TRMT13	52	53.600	ENSMMOG00000007762	trmt13	90	53.600	Mola_mola
ENSSSCG00000006869	TRMT13	100	77.778	ENSMODG00000003646	TRMT13	100	77.778	Monodelphis_domestica
ENSSSCG00000006869	TRMT13	99	49.378	ENSMALG00000020965	trmt13	99	49.378	Monopterus_albus
ENSSSCG00000006869	TRMT13	99	84.310	MGP_CAROLIEiJ_G0025568	Trmt13	94	91.667	Mus_caroli
ENSSSCG00000006869	TRMT13	99	84.519	ENSMUSG00000033439	Trmt13	94	91.667	Mus_musculus
ENSSSCG00000006869	TRMT13	99	84.728	MGP_PahariEiJ_G0027014	Trmt13	93	92.169	Mus_pahari
ENSSSCG00000006869	TRMT13	99	84.728	MGP_SPRETEiJ_G0026518	Trmt13	94	91.667	Mus_spretus
ENSSSCG00000006869	TRMT13	81	90.080	ENSMPUG00000002078	-	100	90.289	Mustela_putorius_furo
ENSSSCG00000006869	TRMT13	100	79.626	ENSMLUG00000002124	TRMT13	100	79.626	Myotis_lucifugus
ENSSSCG00000006869	TRMT13	99	50.000	ENSNBRG00000006783	trmt13	95	50.649	Neolamprologus_brichardi
ENSSSCG00000006869	TRMT13	100	90.852	ENSNLEG00000035917	TRMT13	100	90.852	Nomascus_leucogenys
ENSSSCG00000006869	TRMT13	51	74.194	ENSMEUG00000013346	-	100	74.194	Notamacropus_eugenii
ENSSSCG00000006869	TRMT13	67	89.338	ENSOPRG00000012048	TRMT13	67	89.338	Ochotona_princeps
ENSSSCG00000006869	TRMT13	96	54.123	ENSONIG00000004574	trmt13	99	54.123	Oreochromis_niloticus
ENSSSCG00000006869	TRMT13	89	74.014	ENSOANG00000012057	TRMT13	99	74.014	Ornithorhynchus_anatinus
ENSSSCG00000006869	TRMT13	100	90.021	ENSOCUG00000023095	TRMT13	100	90.021	Oryctolagus_cuniculus
ENSSSCG00000006869	TRMT13	96	49.576	ENSORLG00000003320	trmt13	99	49.682	Oryzias_latipes
ENSSSCG00000006869	TRMT13	95	50.000	ENSORLG00020005972	trmt13	98	50.316	Oryzias_latipes_hni
ENSSSCG00000006869	TRMT13	96	52.966	ENSORLG00015002270	trmt13	99	52.966	Oryzias_latipes_hsok
ENSSSCG00000006869	TRMT13	97	51.477	ENSOMEG00000006724	trmt13	95	52.321	Oryzias_melastigma
ENSSSCG00000006869	TRMT13	98	92.178	ENSOGAG00000005618	TRMT13	97	91.684	Otolemur_garnettii
ENSSSCG00000006869	TRMT13	100	93.347	ENSOARG00000017983	TRMT13	100	93.347	Ovis_aries
ENSSSCG00000006869	TRMT13	100	90.644	ENSPPAG00000043736	TRMT13	100	90.644	Pan_paniscus
ENSSSCG00000006869	TRMT13	100	93.763	ENSPPRG00000003424	TRMT13	100	96.330	Panthera_pardus
ENSSSCG00000006869	TRMT13	100	93.763	ENSPTIG00000018598	TRMT13	100	96.330	Panthera_tigris_altaica
ENSSSCG00000006869	TRMT13	100	90.644	ENSPTRG00000001001	TRMT13	100	90.644	Pan_troglodytes
ENSSSCG00000006869	TRMT13	100	91.476	ENSPANG00000007598	TRMT13	100	92.661	Papio_anubis
ENSSSCG00000006869	TRMT13	97	55.032	ENSPKIG00000001514	trmt13	99	55.032	Paramormyrops_kingsleyae
ENSSSCG00000006869	TRMT13	86	70.504	ENSPSIG00000012703	TRMT13	99	70.504	Pelodiscus_sinensis
ENSSSCG00000006869	TRMT13	96	51.606	ENSPMGG00000013298	trmt13	94	51.606	Periophthalmus_magnuspinnatus
ENSSSCG00000006869	TRMT13	99	82.500	ENSPEMG00000000275	Trmt13	99	82.500	Peromyscus_maniculatus_bairdii
ENSSSCG00000006869	TRMT13	95	46.347	ENSPMAG00000000823	trmt13	100	45.825	Petromyzon_marinus
ENSSSCG00000006869	TRMT13	99	77.131	ENSPCIG00000007699	TRMT13	99	77.755	Phascolarctos_cinereus
ENSSSCG00000006869	TRMT13	99	49.269	ENSPFOG00000008675	trmt13	99	49.269	Poecilia_formosa
ENSSSCG00000006869	TRMT13	96	49.153	ENSPLAG00000009709	trmt13	99	49.153	Poecilia_latipinna
ENSSSCG00000006869	TRMT13	95	48.298	ENSPMEG00000022954	trmt13	99	48.298	Poecilia_mexicana
ENSSSCG00000006869	TRMT13	78	50.909	ENSPREG00000005645	trmt13	92	50.951	Poecilia_reticulata
ENSSSCG00000006869	TRMT13	100	90.644	ENSPPYG00000001120	TRMT13	100	90.644	Pongo_abelii
ENSSSCG00000006869	TRMT13	100	88.981	ENSPCAG00000002340	TRMT13	100	88.981	Procavia_capensis
ENSSSCG00000006869	TRMT13	100	92.100	ENSPCOG00000017984	TRMT13	100	92.661	Propithecus_coquereli
ENSSSCG00000006869	TRMT13	100	92.931	ENSPVAG00000017430	TRMT13	100	92.931	Pteropus_vampyrus
ENSSSCG00000006869	TRMT13	96	54.425	ENSPNYG00000013690	trmt13	99	54.425	Pundamilia_nyererei
ENSSSCG00000006869	TRMT13	96	54.818	ENSPNAG00000022130	trmt13	98	54.818	Pygocentrus_nattereri
ENSSSCG00000006869	TRMT13	99	84.519	ENSRNOG00000015140	Trmt13	96	84.519	Rattus_norvegicus
ENSSSCG00000006869	TRMT13	100	91.684	ENSRBIG00000037686	TRMT13	100	92.661	Rhinopithecus_bieti
ENSSSCG00000006869	TRMT13	100	91.684	ENSRROG00000044057	TRMT13	100	92.661	Rhinopithecus_roxellana
ENSSSCG00000006869	TRMT13	100	91.476	ENSSBOG00000026541	TRMT13	100	92.661	Saimiri_boliviensis_boliviensis
ENSSSCG00000006869	TRMT13	91	78.490	ENSSHAG00000005213	TRMT13	97	78.490	Sarcophilus_harrisii
ENSSSCG00000006869	TRMT13	97	53.518	ENSSFOG00015017560	trmt13	98	54.584	Scleropages_formosus
ENSSSCG00000006869	TRMT13	97	51.046	ENSSMAG00000014592	trmt13	97	51.046	Scophthalmus_maximus
ENSSSCG00000006869	TRMT13	95	50.947	ENSSDUG00000015508	trmt13	97	50.620	Seriola_dumerili
ENSSSCG00000006869	TRMT13	96	51.050	ENSSLDG00000019060	trmt13	96	51.050	Seriola_lalandi_dorsalis
ENSSSCG00000006869	TRMT13	99	78.288	ENSSARG00000010344	TRMT13	99	78.288	Sorex_araneus
ENSSSCG00000006869	TRMT13	96	67.603	ENSSPUG00000016339	TRMT13	100	67.603	Sphenodon_punctatus
ENSSSCG00000006869	TRMT13	98	52.183	ENSSPAG00000011922	trmt13	99	52.263	Stegastes_partitus
ENSSSCG00000006869	TRMT13	97	66.880	ENSTGUG00000005253	TRMT13	100	66.880	Taeniopygia_guttata
ENSSSCG00000006869	TRMT13	95	50.746	ENSTRUG00000008400	trmt13	99	50.734	Takifugu_rubripes
ENSSSCG00000006869	TRMT13	86	75.481	ENSTBEG00000008911	TRMT13	100	75.481	Tupaia_belangeri
ENSSSCG00000006869	TRMT13	53	100.000	ENSTTRG00000015302	-	60	100.000	Tursiops_truncatus
ENSSSCG00000006869	TRMT13	100	87.734	ENSUAMG00000017251	TRMT13	100	87.734	Ursus_americanus
ENSSSCG00000006869	TRMT13	100	92.931	ENSUMAG00000007901	TRMT13	100	92.931	Ursus_maritimus
ENSSSCG00000006869	TRMT13	77	100.000	ENSVPAG00000001034	TRMT13	82	100.000	Vicugna_pacos
ENSSSCG00000006869	TRMT13	99	93.139	ENSVVUG00000021996	TRMT13	99	93.139	Vulpes_vulpes
ENSSSCG00000006869	TRMT13	96	56.182	ENSXETG00000013204	trmt13	97	56.087	Xenopus_tropicalis
ENSSSCG00000006869	TRMT13	96	48.101	ENSXMAG00000010765	trmt13	99	48.101	Xiphophorus_maculatus