EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000006912 (Gene tree)
Gene ID: 100156806
Gene Symbol: HFM1
Alias: FLJ36760|FLJ39011|MER3|SEC63D1
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 84549 bases
Position: chr4:125522334-125606882
Accession: 100156806
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000035201	ResIII	PF04851.15	1.3e-10	1	1
ENSSSCP00000057287	ResIII	PF04851.15	1.4e-10	1	1
ENSSSCP00000007369	ResIII	PF04851.15	1.4e-10	1	1
ENSSSCP00000057287	DEAD	PF00270.29	8.2e-26	1	1
ENSSSCP00000035201	DEAD	PF00270.29	8.4e-26	1	1
ENSSSCP00000007369	DEAD	PF00270.29	8.9e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000039999	HFM1-203	4400	XM_013997388	ENSSSCP00000057287	1365 (aa)	XP_013852842	A0A287BMJ1
ENSSSCT00000007570	HFM1-202	4742	XM_013997383	ENSSSCP00000007369	1479 (aa)	XP_013852837	F1S4E9
ENSSSCT00000038753	HFM1-201	4888	XM_013997387	ENSSSCP00000035201	1437 (aa)	XP_013852841	A0A286ZUN5

Gene Model

Click here to download ENSSSCG00000006912's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000006912's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000006912	HFM1	58	33.807	ENSSSCG00000008127	SNRNP200	73	33.807
ENSSSCG00000006912	HFM1	53	35.180	ENSSSCG00000004358	ASCC3	68	35.180

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000006912	HFM1	100	82.155	ENSG00000162669	HFM1	100	82.155	Homo_sapiens
ENSSSCG00000006912	HFM1	61	66.746	ENSAPOG00000005304	hfm1	94	66.746	Acanthochromis_polyacanthus
ENSSSCG00000006912	HFM1	100	83.838	ENSAMEG00000000432	HFM1	100	83.838	Ailuropoda_melanoleuca
ENSSSCG00000006912	HFM1	78	58.704	ENSACIG00000021553	hfm1	95	57.971	Amphilophus_citrinellus
ENSSSCG00000006912	HFM1	61	67.146	ENSAOCG00000022839	hfm1	96	69.357	Amphiprion_ocellaris
ENSSSCG00000006912	HFM1	61	66.906	ENSAPEG00000014316	hfm1	96	69.532	Amphiprion_percula
ENSSSCG00000006912	HFM1	77	59.853	ENSATEG00000019181	hfm1	91	58.863	Anabas_testudineus
ENSSSCG00000006912	HFM1	98	61.550	ENSAPLG00000013639	HFM1	100	57.964	Anas_platyrhynchos
ENSSSCG00000006912	HFM1	100	79.043	ENSANAG00000029513	HFM1	100	79.043	Aotus_nancymaae
ENSSSCG00000006912	HFM1	68	63.412	ENSACLG00000009033	hfm1	97	64.958	Astatotilapia_calliptera
ENSSSCG00000006912	HFM1	70	66.564	ENSAMXG00000006108	hfm1	76	61.176	Astyanax_mexicanus
ENSSSCG00000006912	HFM1	100	83.817	ENSBTAG00000020856	HFM1	100	83.817	Bos_taurus
ENSSSCG00000006912	HFM1	100	80.337	ENSCJAG00000001843	HFM1	100	80.337	Callithrix_jacchus
ENSSSCG00000006912	HFM1	98	86.533	ENSCAFG00000020187	HFM1	99	84.610	Canis_familiaris
ENSSSCG00000006912	HFM1	100	81.090	ENSTSYG00000014250	HFM1	100	81.090	Carlito_syrichta
ENSSSCG00000006912	HFM1	99	77.892	ENSCPOG00000007421	HFM1	99	75.185	Cavia_porcellus
ENSSSCG00000006912	HFM1	100	80.067	ENSCCAG00000033206	HFM1	100	80.067	Cebus_capucinus
ENSSSCG00000006912	HFM1	100	81.414	ENSCATG00000030987	HFM1	100	81.414	Cercocebus_atys
ENSSSCG00000006912	HFM1	100	80.000	ENSCLAG00000005173	HFM1	99	80.000	Chinchilla_lanigera
ENSSSCG00000006912	HFM1	63	93.421	ENSCHOG00000011824	-	71	93.421	Choloepus_hoffmanni
ENSSSCG00000006912	HFM1	51	53.278	ENSCSAVG00000005094	-	100	53.278	Ciona_savignyi
ENSSSCG00000006912	HFM1	100	69.344	ENSCGRG00001016995	Hfm1	100	69.344	Cricetulus_griseus_chok1gshd
ENSSSCG00000006912	HFM1	100	73.419	ENSCGRG00000017181	Hfm1	100	73.419	Cricetulus_griseus_crigri
ENSSSCG00000006912	HFM1	68	63.722	ENSCSEG00000017659	hfm1	87	63.722	Cynoglossus_semilaevis
ENSSSCG00000006912	HFM1	52	69.705	ENSCVAG00000005075	hfm1	86	69.705	Cyprinodon_variegatus
ENSSSCG00000006912	HFM1	80	56.486	ENSDARG00000104288	hfm1	96	56.486	Danio_rerio
ENSSSCG00000006912	HFM1	100	80.943	ENSDNOG00000004776	HFM1	100	80.943	Dasypus_novemcinctus
ENSSSCG00000006912	HFM1	99	76.023	ENSDORG00000014661	Hfm1	100	73.985	Dipodomys_ordii
ENSSSCG00000006912	HFM1	78	84.492	ENSEASG00005015424	HFM1	98	84.717	Equus_asinus_asinus
ENSSSCG00000006912	HFM1	100	86.465	ENSECAG00000024039	HFM1	100	86.465	Equus_caballus
ENSSSCG00000006912	HFM1	66	67.830	ENSELUG00000018944	hfm1	98	67.830	Esox_lucius
ENSSSCG00000006912	HFM1	99	84.667	ENSFCAG00000029116	HFM1	100	83.098	Felis_catus
ENSSSCG00000006912	HFM1	100	57.710	ENSFALG00000001781	HFM1	100	58.294	Ficedula_albicollis
ENSSSCG00000006912	HFM1	100	78.083	ENSFDAG00000020816	HFM1	100	78.083	Fukomys_damarensis
ENSSSCG00000006912	HFM1	70	61.186	ENSGMOG00000017436	hfm1	100	61.186	Gadus_morhua
ENSSSCG00000006912	HFM1	78	60.487	ENSGAFG00000018093	hfm1	94	66.587	Gambusia_affinis
ENSSSCG00000006912	HFM1	70	62.062	ENSGACG00000015686	hfm1	100	62.062	Gasterosteus_aculeatus
ENSSSCG00000006912	HFM1	100	81.953	ENSGGOG00000038524	HFM1	100	81.953	Gorilla_gorilla
ENSSSCG00000006912	HFM1	68	64.378	ENSHBUG00000007309	hfm1	96	59.057	Haplochromis_burtoni
ENSSSCG00000006912	HFM1	59	64.461	ENSHCOG00000019632	hfm1	97	64.461	Hippocampus_comes
ENSSSCG00000006912	HFM1	68	66.346	ENSIPUG00000017020	hfm1	92	67.182	Ictalurus_punctatus
ENSSSCG00000006912	HFM1	96	77.515	ENSJJAG00000017198	Hfm1	94	77.515	Jaculus_jaculus
ENSSSCG00000006912	HFM1	65	62.171	ENSKMAG00000002282	hfm1	91	62.171	Kryptolebias_marmoratus
ENSSSCG00000006912	HFM1	68	63.490	ENSLBEG00000006759	hfm1	97	66.311	Labrus_bergylta
ENSSSCG00000006912	HFM1	78	66.636	ENSLACG00000010698	HFM1	100	66.728	Latimeria_chalumnae
ENSSSCG00000006912	HFM1	81	61.362	ENSLOCG00000004931	hfm1	99	61.293	Lepisosteus_oculatus
ENSSSCG00000006912	HFM1	54	89.367	ENSLAFG00000015903	-	99	89.367	Loxodonta_africana
ENSSSCG00000006912	HFM1	100	78.859	ENSMFAG00000003649	HFM1	100	78.859	Macaca_fascicularis
ENSSSCG00000006912	HFM1	100	81.010	ENSMMUG00000006819	HFM1	100	81.010	Macaca_mulatta
ENSSSCG00000006912	HFM1	58	69.549	ENSMAMG00000004623	hfm1	97	67.029	Mastacembelus_armatus
ENSSSCG00000006912	HFM1	68	63.412	ENSMZEG00005004679	hfm1	97	64.958	Maylandia_zebra
ENSSSCG00000006912	HFM1	57	77.849	ENSMGAG00000008437	HFM1	97	77.849	Meleagris_gallopavo
ENSSSCG00000006912	HFM1	98	76.134	ENSMAUG00000018858	Hfm1	100	73.939	Mesocricetus_auratus
ENSSSCG00000006912	HFM1	100	81.023	ENSMICG00000037935	HFM1	100	81.023	Microcebus_murinus
ENSSSCG00000006912	HFM1	98	74.052	ENSMOCG00000014812	Hfm1	100	71.785	Microtus_ochrogaster
ENSSSCG00000006912	HFM1	65	64.350	ENSMMOG00000006148	hfm1	96	65.122	Mola_mola
ENSSSCG00000006912	HFM1	68	64.072	ENSMALG00000002401	hfm1	94	67.268	Monopterus_albus
ENSSSCG00000006912	HFM1	92	76.659	MGP_CAROLIEiJ_G0027496	Hfm1	100	72.960	Mus_caroli
ENSSSCG00000006912	HFM1	99	74.426	ENSMUSG00000043410	Hfm1	100	72.458	Mus_musculus
ENSSSCG00000006912	HFM1	99	75.019	MGP_PahariEiJ_G0017268	Hfm1	100	73.077	Mus_pahari
ENSSSCG00000006912	HFM1	99	74.203	MGP_SPRETEiJ_G0028495	Hfm1	100	72.256	Mus_spretus
ENSSSCG00000006912	HFM1	100	84.253	ENSMPUG00000004594	HFM1	100	84.253	Mustela_putorius_furo
ENSSSCG00000006912	HFM1	98	83.084	ENSMLUG00000010200	HFM1	100	80.997	Myotis_lucifugus
ENSSSCG00000006912	HFM1	76	55.863	ENSNBRG00000002910	hfm1	97	65.333	Neolamprologus_brichardi
ENSSSCG00000006912	HFM1	100	78.121	ENSNLEG00000010285	HFM1	100	78.121	Nomascus_leucogenys
ENSSSCG00000006912	HFM1	91	63.657	ENSMEUG00000015788	HFM1	84	63.657	Notamacropus_eugenii
ENSSSCG00000006912	HFM1	87	76.525	ENSOPRG00000013916	HFM1	84	76.525	Ochotona_princeps
ENSSSCG00000006912	HFM1	72	62.637	ENSONIG00000010590	hfm1	99	59.286	Oreochromis_niloticus
ENSSSCG00000006912	HFM1	59	65.683	ENSORLG00000026844	hfm1	99	65.683	Oryzias_latipes
ENSSSCG00000006912	HFM1	70	56.743	ENSORLG00020002951	hfm1	76	56.846	Oryzias_latipes_hni
ENSSSCG00000006912	HFM1	79	58.732	ENSOMEG00000016474	hfm1	84	53.676	Oryzias_melastigma
ENSSSCG00000006912	HFM1	90	85.819	ENSOGAG00000032369	HFM1	99	85.819	Otolemur_garnettii
ENSSSCG00000006912	HFM1	100	84.595	ENSOARG00000015812	HFM1	100	84.595	Ovis_aries
ENSSSCG00000006912	HFM1	98	83.271	ENSPPAG00000024582	HFM1	100	83.321	Pan_paniscus
ENSSSCG00000006912	HFM1	99	84.889	ENSPPRG00000003270	HFM1	100	83.367	Panthera_pardus
ENSSSCG00000006912	HFM1	99	84.741	ENSPTIG00000018881	HFM1	100	83.232	Panthera_tigris_altaica
ENSSSCG00000006912	HFM1	100	82.155	ENSPTRG00000000948	HFM1	100	82.155	Pan_troglodytes
ENSSSCG00000006912	HFM1	100	81.279	ENSPANG00000009838	HFM1	100	81.279	Papio_anubis
ENSSSCG00000006912	HFM1	65	67.640	ENSPKIG00000003810	hfm1	95	68.198	Paramormyrops_kingsleyae
ENSSSCG00000006912	HFM1	60	66.264	ENSPMGG00000011059	hfm1	100	66.264	Periophthalmus_magnuspinnatus
ENSSSCG00000006912	HFM1	98	77.239	ENSPEMG00000022852	Hfm1	100	75.017	Peromyscus_maniculatus_bairdii
ENSSSCG00000006912	HFM1	98	70.898	ENSPCIG00000014233	HFM1	100	68.322	Phascolarctos_cinereus
ENSSSCG00000006912	HFM1	78	61.162	ENSPFOG00000017194	hfm1	100	61.162	Poecilia_formosa
ENSSSCG00000006912	HFM1	78	61.402	ENSPLAG00000000571	hfm1	92	61.402	Poecilia_latipinna
ENSSSCG00000006912	HFM1	78	61.423	ENSPMEG00000019475	hfm1	92	61.423	Poecilia_mexicana
ENSSSCG00000006912	HFM1	68	66.308	ENSPREG00000007803	hfm1	94	66.308	Poecilia_reticulata
ENSSSCG00000006912	HFM1	100	81.818	ENSPPYG00000001163	HFM1	100	81.818	Pongo_abelii
ENSSSCG00000006912	HFM1	75	77.130	ENSPCAG00000004289	-	74	77.130	Procavia_capensis
ENSSSCG00000006912	HFM1	100	74.376	ENSPVAG00000009713	HFM1	100	74.376	Pteropus_vampyrus
ENSSSCG00000006912	HFM1	68	63.197	ENSPNYG00000001795	hfm1	97	64.839	Pundamilia_nyererei
ENSSSCG00000006912	HFM1	62	68.508	ENSPNAG00000010865	hfm1	84	68.508	Pygocentrus_nattereri
ENSSSCG00000006912	HFM1	99	73.981	ENSRNOG00000023299	Hfm1	100	72.323	Rattus_norvegicus
ENSSSCG00000006912	HFM1	100	81.279	ENSRROG00000045569	HFM1	100	81.279	Rhinopithecus_roxellana
ENSSSCG00000006912	HFM1	100	78.055	ENSSBOG00000027456	HFM1	100	78.055	Saimiri_boliviensis_boliviensis
ENSSSCG00000006912	HFM1	62	71.545	ENSSHAG00000014616	-	97	71.545	Sarcophilus_harrisii
ENSSSCG00000006912	HFM1	100	50.616	ENSSFOG00015020129	hfm1	100	50.616	Scleropages_formosus
ENSSSCG00000006912	HFM1	65	65.475	ENSSMAG00000006907	hfm1	87	65.475	Scophthalmus_maximus
ENSSSCG00000006912	HFM1	60	66.989	ENSSDUG00000011424	hfm1	93	66.989	Seriola_dumerili
ENSSSCG00000006912	HFM1	61	67.108	ENSSLDG00000016386	hfm1	92	67.108	Seriola_lalandi_dorsalis
ENSSSCG00000006912	HFM1	69	60.526	ENSSPAG00000001023	hfm1	95	66.746	Stegastes_partitus
ENSSSCG00000006912	HFM1	70	75.653	ENSTGUG00000006172	HFM1	100	75.653	Taeniopygia_guttata
ENSSSCG00000006912	HFM1	98	86.482	ENSTTRG00000013933	HFM1	100	81.554	Tursiops_truncatus
ENSSSCG00000006912	HFM1	93	85.246	ENSVPAG00000011331	HFM1	93	85.246	Vicugna_pacos
ENSSSCG00000006912	HFM1	77	84.061	ENSVVUG00000020760	HFM1	99	84.061	Vulpes_vulpes
ENSSSCG00000006912	HFM1	60	67.473	ENSXMAG00000004178	hfm1	92	67.473	Xiphophorus_maculatus