EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000007109 (Gene tree)
Gene ID: 100517201
Gene Symbol: XRN2
Alias: -
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 85265 bases
Position: chr17:29107756-29193020
Accession: 100517201
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000033620	XRN_N	PF03159.18	1e-102	1	1
ENSSSCP00000007572	XRN_N	PF03159.18	1e-102	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000007781	XRN2-201	2814	XM_005672749	ENSSSCP00000007572	937 (aa)	XP_005672806	F1SAU5
ENSSSCT00000059298	XRN2-202	2793	-	ENSSSCP00000033620	930 (aa)	-	A0A286ZPU3

Gene Model

Click here to download ENSSSCG00000007109's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03008	Ribosome biogenesis in eukaryotes	KEGG
ssc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000007109's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000007109	XRN2	100	95.579	ENSG00000088930	XRN2	100	95.579	Homo_sapiens
ENSSSCG00000007109	XRN2	97	70.457	ENSAPOG00000009818	xrn2	100	69.246	Acanthochromis_polyacanthus
ENSSSCG00000007109	XRN2	100	96.421	ENSAMEG00000012581	XRN2	100	96.421	Ailuropoda_melanoleuca
ENSSSCG00000007109	XRN2	90	69.301	ENSACIG00000015047	xrn2	95	74.472	Amphilophus_citrinellus
ENSSSCG00000007109	XRN2	100	68.098	ENSAOCG00000023632	xrn2	100	69.777	Amphiprion_ocellaris
ENSSSCG00000007109	XRN2	100	67.817	ENSAPEG00000014871	xrn2	100	69.583	Amphiprion_percula
ENSSSCG00000007109	XRN2	95	70.314	ENSATEG00000001273	xrn2	97	69.662	Anabas_testudineus
ENSSSCG00000007109	XRN2	97	82.239	ENSAPLG00000013869	XRN2	99	82.670	Anas_platyrhynchos
ENSSSCG00000007109	XRN2	100	79.710	ENSACAG00000005565	XRN2	100	79.710	Anolis_carolinensis
ENSSSCG00000007109	XRN2	100	95.263	ENSANAG00000020126	XRN2	100	95.263	Aotus_nancymaae
ENSSSCG00000007109	XRN2	90	72.254	ENSACLG00000010522	xrn2	96	76.667	Astatotilapia_calliptera
ENSSSCG00000007109	XRN2	100	70.133	ENSAMXG00000018301	xrn2	100	70.133	Astyanax_mexicanus
ENSSSCG00000007109	XRN2	100	95.268	ENSBTAG00000011304	XRN2	100	95.268	Bos_taurus
ENSSSCG00000007109	XRN2	86	54.133	WBGene00006964	xrn-2	89	53.454	Caenorhabditis_elegans
ENSSSCG00000007109	XRN2	100	95.368	ENSCJAG00000005611	XRN2	100	95.368	Callithrix_jacchus
ENSSSCG00000007109	XRN2	100	96.316	ENSCAFG00000005185	XRN2	100	96.316	Canis_familiaris
ENSSSCG00000007109	XRN2	100	96.316	ENSCAFG00020027479	XRN2	100	96.316	Canis_lupus_dingo
ENSSSCG00000007109	XRN2	100	95.478	ENSCHIG00000006921	XRN2	100	95.478	Capra_hircus
ENSSSCG00000007109	XRN2	100	95.053	ENSTSYG00000008315	XRN2	100	95.053	Carlito_syrichta
ENSSSCG00000007109	XRN2	97	80.259	ENSCAPG00000010773	XRN2	99	80.151	Cavia_aperea
ENSSSCG00000007109	XRN2	100	95.474	ENSCPOG00000009407	XRN2	100	95.474	Cavia_porcellus
ENSSSCG00000007109	XRN2	100	95.789	ENSCATG00000040350	XRN2	100	95.789	Cercocebus_atys
ENSSSCG00000007109	XRN2	100	95.789	ENSCLAG00000013419	XRN2	100	95.789	Chinchilla_lanigera
ENSSSCG00000007109	XRN2	100	95.789	ENSCSAG00000011094	XRN2	100	95.789	Chlorocebus_sabaeus
ENSSSCG00000007109	XRN2	68	99.462	ENSCHOG00000013404	XRN2	70	99.462	Choloepus_hoffmanni
ENSSSCG00000007109	XRN2	100	84.062	ENSCPBG00000023533	XRN2	100	84.688	Chrysemys_picta_bellii
ENSSSCG00000007109	XRN2	86	59.308	ENSCING00000022336	-	100	59.666	Ciona_intestinalis
ENSSSCG00000007109	XRN2	86	57.757	ENSCSAVG00000011217	-	100	61.977	Ciona_savignyi
ENSSSCG00000007109	XRN2	100	95.789	ENSCANG00000040240	XRN2	100	95.789	Colobus_angolensis_palliatus
ENSSSCG00000007109	XRN2	98	94.618	ENSCGRG00001010676	Xrn2	99	94.618	Cricetulus_griseus_chok1gshd
ENSSSCG00000007109	XRN2	97	93.851	ENSCGRG00000006378	Xrn2	99	93.851	Cricetulus_griseus_crigri
ENSSSCG00000007109	XRN2	55	72.157	ENSCSEG00000005628	xrn2	100	72.157	Cynoglossus_semilaevis
ENSSSCG00000007109	XRN2	89	69.885	ENSCVAG00000018999	xrn2	98	76.571	Cyprinodon_variegatus
ENSSSCG00000007109	XRN2	100	69.026	ENSDARG00000101900	xrn2	96	78.435	Danio_rerio
ENSSSCG00000007109	XRN2	100	95.263	ENSDNOG00000001895	XRN2	100	95.263	Dasypus_novemcinctus
ENSSSCG00000007109	XRN2	100	93.053	ENSDORG00000005434	Xrn2	100	93.053	Dipodomys_ordii
ENSSSCG00000007109	XRN2	86	55.893	FBgn0031868	Rat1	90	54.524	Drosophila_melanogaster
ENSSSCG00000007109	XRN2	100	82.211	ENSETEG00000001740	XRN2	100	82.211	Echinops_telfairi
ENSSSCG00000007109	XRN2	84	70.303	ENSEBUG00000016136	xrn2	100	70.303	Eptatretus_burgeri
ENSSSCG00000007109	XRN2	100	95.579	ENSEASG00005002484	XRN2	100	95.579	Equus_asinus_asinus
ENSSSCG00000007109	XRN2	99	95.565	ENSECAG00000018988	XRN2	96	100.000	Equus_caballus
ENSSSCG00000007109	XRN2	80	100.000	ENSEEUG00000009265	XRN2	80	100.000	Erinaceus_europaeus
ENSSSCG00000007109	XRN2	100	69.057	ENSELUG00000000552	xrn2	100	69.467	Esox_lucius
ENSSSCG00000007109	XRN2	100	96.211	ENSFCAG00000007970	XRN2	100	96.211	Felis_catus
ENSSSCG00000007109	XRN2	100	82.075	ENSFALG00000004508	XRN2	100	82.495	Ficedula_albicollis
ENSSSCG00000007109	XRN2	100	95.158	ENSFDAG00000016311	XRN2	100	95.158	Fukomys_damarensis
ENSSSCG00000007109	XRN2	55	69.772	ENSFHEG00000013039	xrn2	98	69.772	Fundulus_heteroclitus
ENSSSCG00000007109	XRN2	86	71.567	ENSGMOG00000013436	xrn2	100	71.567	Gadus_morhua
ENSSSCG00000007109	XRN2	100	81.885	ENSGALG00000008372	XRN2	100	81.885	Gallus_gallus
ENSSSCG00000007109	XRN2	89	72.093	ENSGAFG00000014284	xrn2	92	78.832	Gambusia_affinis
ENSSSCG00000007109	XRN2	87	73.317	ENSGACG00000011870	xrn2	96	77.992	Gasterosteus_aculeatus
ENSSSCG00000007109	XRN2	100	83.750	ENSGAGG00000004884	XRN2	100	84.375	Gopherus_agassizii
ENSSSCG00000007109	XRN2	100	95.789	ENSGGOG00000013738	XRN2	100	95.789	Gorilla_gorilla
ENSSSCG00000007109	XRN2	55	74.664	ENSHBUG00000005077	xrn2	96	76.667	Haplochromis_burtoni
ENSSSCG00000007109	XRN2	100	94.316	ENSHGLG00000014831	XRN2	100	94.211	Heterocephalus_glaber_female
ENSSSCG00000007109	XRN2	100	94.316	ENSHGLG00100013130	XRN2	100	94.211	Heterocephalus_glaber_male
ENSSSCG00000007109	XRN2	99	66.869	ENSHCOG00000011994	xrn2	97	69.718	Hippocampus_comes
ENSSSCG00000007109	XRN2	100	68.367	ENSIPUG00000006639	xrn2	100	68.367	Ictalurus_punctatus
ENSSSCG00000007109	XRN2	100	95.789	ENSSTOG00000000589	XRN2	100	95.789	Ictidomys_tridecemlineatus
ENSSSCG00000007109	XRN2	100	94.421	ENSJJAG00000022128	Xrn2	100	94.421	Jaculus_jaculus
ENSSSCG00000007109	XRN2	55	79.492	ENSLBEG00000010041	xrn2	100	79.492	Labrus_bergylta
ENSSSCG00000007109	XRN2	94	76.085	ENSLACG00000008307	XRN2	99	78.528	Latimeria_chalumnae
ENSSSCG00000007109	XRN2	99	71.653	ENSLOCG00000016874	xrn2	100	71.653	Lepisosteus_oculatus
ENSSSCG00000007109	XRN2	100	94.316	ENSLAFG00000014624	XRN2	100	94.316	Loxodonta_africana
ENSSSCG00000007109	XRN2	100	95.789	ENSMFAG00000038122	XRN2	100	95.789	Macaca_fascicularis
ENSSSCG00000007109	XRN2	100	95.789	ENSMMUG00000011405	XRN2	100	95.789	Macaca_mulatta
ENSSSCG00000007109	XRN2	100	95.684	ENSMNEG00000040626	XRN2	100	95.684	Macaca_nemestrina
ENSSSCG00000007109	XRN2	100	95.789	ENSMLEG00000041897	XRN2	100	95.789	Mandrillus_leucophaeus
ENSSSCG00000007109	XRN2	95	71.397	ENSMAMG00000008633	xrn2	98	69.926	Mastacembelus_armatus
ENSSSCG00000007109	XRN2	90	74.104	ENSMZEG00005022362	xrn2	97	74.104	Maylandia_zebra
ENSSSCG00000007109	XRN2	99	80.312	ENSMGAG00000003196	XRN2	99	80.312	Meleagris_gallopavo
ENSSSCG00000007109	XRN2	100	94.842	ENSMAUG00000021842	Xrn2	100	94.842	Mesocricetus_auratus
ENSSSCG00000007109	XRN2	100	95.158	ENSMICG00000008126	XRN2	100	95.158	Microcebus_murinus
ENSSSCG00000007109	XRN2	100	94.316	ENSMOCG00000012588	Xrn2	100	94.316	Microtus_ochrogaster
ENSSSCG00000007109	XRN2	89	72.165	ENSMMOG00000017576	xrn2	96	74.004	Mola_mola
ENSSSCG00000007109	XRN2	100	89.579	ENSMODG00000006163	XRN2	100	89.579	Monodelphis_domestica
ENSSSCG00000007109	XRN2	91	70.449	ENSMALG00000011355	xrn2	95	75.717	Monopterus_albus
ENSSSCG00000007109	XRN2	100	93.586	MGP_CAROLIEiJ_G0024400	Xrn2	100	93.586	Mus_caroli
ENSSSCG00000007109	XRN2	100	93.796	ENSMUSG00000027433	Xrn2	100	93.796	Mus_musculus
ENSSSCG00000007109	XRN2	100	93.586	MGP_PahariEiJ_G0025843	Xrn2	100	93.586	Mus_pahari
ENSSSCG00000007109	XRN2	100	93.796	MGP_SPRETEiJ_G0025318	Xrn2	100	93.796	Mus_spretus
ENSSSCG00000007109	XRN2	100	94.623	ENSMPUG00000001198	XRN2	93	94.623	Mustela_putorius_furo
ENSSSCG00000007109	XRN2	100	95.474	ENSMLUG00000001536	XRN2	100	95.474	Myotis_lucifugus
ENSSSCG00000007109	XRN2	100	94.737	ENSNGAG00000018138	Xrn2	100	94.737	Nannospalax_galili
ENSSSCG00000007109	XRN2	90	74.335	ENSNBRG00000008062	xrn2	96	76.667	Neolamprologus_brichardi
ENSSSCG00000007109	XRN2	100	95.684	ENSNLEG00000009991	XRN2	100	95.684	Nomascus_leucogenys
ENSSSCG00000007109	XRN2	58	91.176	ENSMEUG00000008622	-	58	91.176	Notamacropus_eugenii
ENSSSCG00000007109	XRN2	69	86.842	ENSOPRG00000001397	-	71	86.842	Ochotona_princeps
ENSSSCG00000007109	XRN2	100	95.158	ENSODEG00000010745	-	100	95.158	Octodon_degus
ENSSSCG00000007109	XRN2	98	85.976	ENSODEG00000000860	-	99	86.408	Octodon_degus
ENSSSCG00000007109	XRN2	100	70.309	ENSONIG00000018720	xrn2	100	70.515	Oreochromis_niloticus
ENSSSCG00000007109	XRN2	100	89.286	ENSOANG00000015673	XRN2	100	89.286	Ornithorhynchus_anatinus
ENSSSCG00000007109	XRN2	100	95.789	ENSOCUG00000013468	XRN2	100	95.789	Oryctolagus_cuniculus
ENSSSCG00000007109	XRN2	98	68.951	ENSORLG00000017213	xrn2	97	73.441	Oryzias_latipes
ENSSSCG00000007109	XRN2	99	67.963	ENSORLG00020001824	xrn2	100	68.534	Oryzias_latipes_hni
ENSSSCG00000007109	XRN2	98	68.744	ENSORLG00015019747	xrn2	100	68.432	Oryzias_latipes_hsok
ENSSSCG00000007109	XRN2	97	67.937	ENSOMEG00000019820	xrn2	100	67.915	Oryzias_melastigma
ENSSSCG00000007109	XRN2	100	94.427	ENSOGAG00000001068	XRN2	100	94.427	Otolemur_garnettii
ENSSSCG00000007109	XRN2	97	95.356	ENSOARG00000004443	XRN2	100	95.356	Ovis_aries
ENSSSCG00000007109	XRN2	100	95.789	ENSPPAG00000033549	XRN2	100	95.789	Pan_paniscus
ENSSSCG00000007109	XRN2	100	96.211	ENSPPRG00000008732	XRN2	100	96.211	Panthera_pardus
ENSSSCG00000007109	XRN2	97	96.108	ENSPTIG00000015683	XRN2	97	96.108	Panthera_tigris_altaica
ENSSSCG00000007109	XRN2	100	95.789	ENSPTRG00000013308	XRN2	100	95.789	Pan_troglodytes
ENSSSCG00000007109	XRN2	100	95.789	ENSPANG00000018088	XRN2	100	95.789	Papio_anubis
ENSSSCG00000007109	XRN2	100	69.601	ENSPKIG00000016889	xrn2	100	69.601	Paramormyrops_kingsleyae
ENSSSCG00000007109	XRN2	80	86.068	ENSPSIG00000014666	XRN2	100	86.068	Pelodiscus_sinensis
ENSSSCG00000007109	XRN2	100	94.000	ENSPEMG00000000111	Xrn2	100	94.000	Peromyscus_maniculatus_bairdii
ENSSSCG00000007109	XRN2	100	68.536	ENSPFOG00000004182	xrn2	99	68.841	Poecilia_formosa
ENSSSCG00000007109	XRN2	89	72.558	ENSPLAG00000007351	xrn2	96	72.558	Poecilia_latipinna
ENSSSCG00000007109	XRN2	94	66.376	ENSPMEG00000011798	xrn2	99	67.247	Poecilia_mexicana
ENSSSCG00000007109	XRN2	89	72.558	ENSPREG00000012452	xrn2	99	71.044	Poecilia_reticulata
ENSSSCG00000007109	XRN2	100	95.263	ENSPPYG00000010755	XRN2	100	95.263	Pongo_abelii
ENSSSCG00000007109	XRN2	100	89.496	ENSPCAG00000011191	XRN2	100	89.496	Procavia_capensis
ENSSSCG00000007109	XRN2	100	88.000	ENSPCOG00000016468	XRN2	100	88.000	Propithecus_coquereli
ENSSSCG00000007109	XRN2	93	94.529	ENSPVAG00000004596	XRN2	92	94.529	Pteropus_vampyrus
ENSSSCG00000007109	XRN2	90	72.254	ENSPNYG00000001765	xrn2	97	72.254	Pundamilia_nyererei
ENSSSCG00000007109	XRN2	100	70.204	ENSPNAG00000010956	xrn2	99	70.204	Pygocentrus_nattereri
ENSSSCG00000007109	XRN2	100	94.532	ENSRNOG00000011785	Xrn2	100	94.532	Rattus_norvegicus
ENSSSCG00000007109	XRN2	86	95.599	ENSRBIG00000036193	XRN2	100	95.599	Rhinopithecus_bieti
ENSSSCG00000007109	XRN2	100	95.789	ENSRROG00000044400	XRN2	90	95.789	Rhinopithecus_roxellana
ENSSSCG00000007109	XRN2	69	52.055	YOR048C	RAT1	63	53.606	Saccharomyces_cerevisiae
ENSSSCG00000007109	XRN2	100	95.579	ENSSBOG00000021014	XRN2	100	95.579	Saimiri_boliviensis_boliviensis
ENSSSCG00000007109	XRN2	100	70.661	ENSSFOG00015001091	xrn2	100	70.661	Scleropages_formosus
ENSSSCG00000007109	XRN2	92	71.783	ENSSMAG00000007834	xrn2	100	67.579	Scophthalmus_maximus
ENSSSCG00000007109	XRN2	91	70.362	ENSSDUG00000012802	xrn2	99	71.380	Seriola_dumerili
ENSSSCG00000007109	XRN2	93	72.542	ENSSLDG00000021273	xrn2	100	72.542	Seriola_lalandi_dorsalis
ENSSSCG00000007109	XRN2	76	100.000	ENSSARG00000005859	-	76	100.000	Sorex_araneus
ENSSSCG00000007109	XRN2	98	78.632	ENSSPUG00000005485	XRN2	96	78.739	Sphenodon_punctatus
ENSSSCG00000007109	XRN2	100	69.325	ENSSPAG00000016027	xrn2	99	69.325	Stegastes_partitus
ENSSSCG00000007109	XRN2	100	80.898	ENSTGUG00000007535	XRN2	100	81.315	Taeniopygia_guttata
ENSSSCG00000007109	XRN2	100	66.465	ENSTRUG00000015489	xrn2	100	66.835	Takifugu_rubripes
ENSSSCG00000007109	XRN2	100	69.886	ENSTNIG00000010712	xrn2	100	69.886	Tetraodon_nigroviridis
ENSSSCG00000007109	XRN2	100	95.158	ENSTBEG00000004119	XRN2	100	95.158	Tupaia_belangeri
ENSSSCG00000007109	XRN2	94	96.931	ENSTTRG00000009087	XRN2	93	96.931	Tursiops_truncatus
ENSSSCG00000007109	XRN2	100	96.421	ENSUAMG00000024634	XRN2	100	96.421	Ursus_americanus
ENSSSCG00000007109	XRN2	97	96.108	ENSUMAG00000004012	XRN2	95	96.108	Ursus_maritimus
ENSSSCG00000007109	XRN2	89	88.639	ENSVPAG00000010694	XRN2	91	88.639	Vicugna_pacos
ENSSSCG00000007109	XRN2	100	96.421	ENSVVUG00000012178	XRN2	100	96.421	Vulpes_vulpes
ENSSSCG00000007109	XRN2	100	72.993	ENSXETG00000023501	xrn2	100	73.618	Xenopus_tropicalis
ENSSSCG00000007109	XRN2	100	66.906	ENSXMAG00000000242	xrn2	92	79.075	Xiphophorus_maculatus