EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000007360 (Gene tree)
Gene ID: 100519806
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 217333 bases
Position: chr17:44050008-44267340
Accession: 100519806
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000057505	ResIII	PF04851.15	1.1e-07	1	1
ENSSSCP00000053744	ResIII	PF04851.15	1.4e-07	1	1
ENSSSCP00000043817	ResIII	PF04851.15	1.5e-07	1	1
ENSSSCP00000039584	ResIII	PF04851.15	1.5e-07	1	1
ENSSSCP00000036104	ResIII	PF04851.15	1.5e-07	1	1
ENSSSCP00000033187	ResIII	PF04851.15	1.5e-07	1	1
ENSSSCP00000007838	ResIII	PF04851.15	1.6e-07	1	1
ENSSSCP00000041969	ResIII	PF04851.15	1.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000045480	CHD6-201	8432	-	ENSSSCP00000039584	2692 (aa)	-	A0A287A6K9
ENSSSCT00000008053	CHD6-202	8264	-	ENSSSCP00000007838	2719 (aa)	-	F1SDV1
ENSSSCT00000058435	CHD6-207	8167	-	ENSSSCP00000053744	2614 (aa)	-	A0A287BCC9
ENSSSCT00000047315	CHD6-205	8392	-	ENSSSCP00000036104	2689 (aa)	-	A0A286ZWT2
ENSSSCT00000065491	CHD6-203	8482	XM_021077868	ENSSSCP00000041969	2719 (aa)	XP_020933527	F1SDV1
ENSSSCT00000043660	CHD6-206	8287	XM_021077872	ENSSSCP00000043817	2654 (aa)	XP_020933531	A0A287AIJ1
ENSSSCT00000065786	CHD6-208	7880	-	ENSSSCP00000057505	2369 (aa)	-	A0A287BLK9
ENSSSCT00000055531	CHD6-204	8419	-	ENSSSCP00000033187	2698 (aa)	-	A0A286ZNY7

Gene Model

Click here to download ENSSSCG00000007360's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000007360's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000007360	CHD6	73	68.286	ENSSSCG00000006231	CHD7	71	65.433
ENSSSCG00000007360	CHD6	79	62.340	ENSSSCG00000033591	CHD9	70	65.852
ENSSSCG00000007360	CHD6	72	60.736	ENSSSCG00000002127	CHD8	66	63.038

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000007360	CHD6	100	91.591	ENSG00000124177	CHD6	99	99.660	Homo_sapiens
ENSSSCG00000007360	CHD6	73	75.446	ENSAPOG00000013736	chd6	65	76.096	Acanthochromis_polyacanthus
ENSSSCG00000007360	CHD6	100	92.573	ENSAMEG00000009496	CHD6	100	91.946	Ailuropoda_melanoleuca
ENSSSCG00000007360	CHD6	72	75.645	ENSATEG00000005608	chd6	63	77.739	Anabas_testudineus
ENSSSCG00000007360	CHD6	99	75.912	ENSAPLG00000015592	CHD6	98	75.806	Anas_platyrhynchos
ENSSSCG00000007360	CHD6	99	69.708	ENSACAG00000006842	CHD6	91	76.238	Anolis_carolinensis
ENSSSCG00000007360	CHD6	100	90.815	ENSANAG00000037548	CHD6	99	93.394	Aotus_nancymaae
ENSSSCG00000007360	CHD6	76	75.136	ENSAMXG00000009576	chd6	78	71.148	Astyanax_mexicanus
ENSSSCG00000007360	CHD6	100	91.411	ENSBTAG00000005733	CHD6	100	90.886	Bos_taurus
ENSSSCG00000007360	CHD6	100	90.686	ENSCJAG00000017920	CHD6	99	93.211	Callithrix_jacchus
ENSSSCG00000007360	CHD6	100	92.660	ENSCAFG00000009236	CHD6	100	91.982	Canis_familiaris
ENSSSCG00000007360	CHD6	99	91.931	ENSCAFG00020012906	CHD6	99	97.001	Canis_lupus_dingo
ENSSSCG00000007360	CHD6	100	91.411	ENSCHIG00000017606	CHD6	100	90.665	Capra_hircus
ENSSSCG00000007360	CHD6	85	90.101	ENSTSYG00000014635	CHD6	100	90.101	Carlito_syrichta
ENSSSCG00000007360	CHD6	100	89.154	ENSCPOG00000015641	CHD6	100	89.154	Cavia_porcellus
ENSSSCG00000007360	CHD6	100	90.987	ENSCCAG00000036828	CHD6	99	93.394	Cebus_capucinus
ENSSSCG00000007360	CHD6	100	91.376	ENSCATG00000039248	CHD6	99	93.394	Cercocebus_atys
ENSSSCG00000007360	CHD6	100	89.288	ENSCLAG00000013743	CHD6	100	89.288	Chinchilla_lanigera
ENSSSCG00000007360	CHD6	100	91.462	ENSCSAG00000013997	CHD6	100	90.705	Chlorocebus_sabaeus
ENSSSCG00000007360	CHD6	95	89.262	ENSCHOG00000012647	CHD6	92	93.493	Choloepus_hoffmanni
ENSSSCG00000007360	CHD6	91	82.562	ENSCPBG00000019382	CHD6	99	73.752	Chrysemys_picta_bellii
ENSSSCG00000007360	CHD6	100	91.634	ENSCANG00000043435	CHD6	99	93.394	Colobus_angolensis_palliatus
ENSSSCG00000007360	CHD6	100	88.735	ENSCGRG00001002694	Chd6	100	87.721	Cricetulus_griseus_chok1gshd
ENSSSCG00000007360	CHD6	82	73.908	ENSDARG00000017244	chd6	80	73.908	Danio_rerio
ENSSSCG00000007360	CHD6	99	89.818	ENSDNOG00000004176	CHD6	99	88.823	Dasypus_novemcinctus
ENSSSCG00000007360	CHD6	99	92.324	ENSEASG00005023433	CHD6	95	97.683	Equus_asinus_asinus
ENSSSCG00000007360	CHD6	99	93.175	ENSECAG00000011761	CHD6	100	92.715	Equus_caballus
ENSSSCG00000007360	CHD6	69	80.415	ENSELUG00000012309	chd6	90	80.415	Esox_lucius
ENSSSCG00000007360	CHD6	100	92.789	ENSFCAG00000003572	CHD6	100	92.093	Felis_catus
ENSSSCG00000007360	CHD6	99	72.287	ENSFALG00000012563	CHD6	98	71.119	Ficedula_albicollis
ENSSSCG00000007360	CHD6	99	89.377	ENSFDAG00000013791	CHD6	99	89.377	Fukomys_damarensis
ENSSSCG00000007360	CHD6	72	69.764	ENSGMOG00000011715	chd6	84	70.892	Gadus_morhua
ENSSSCG00000007360	CHD6	77	71.344	ENSGACG00000000037	chd6	86	69.861	Gasterosteus_aculeatus
ENSSSCG00000007360	CHD6	100	91.677	ENSGGOG00000013123	CHD6	99	93.394	Gorilla_gorilla
ENSSSCG00000007360	CHD6	76	72.403	ENSHBUG00000014701	chd6	65	73.610	Haplochromis_burtoni
ENSSSCG00000007360	CHD6	100	89.776	ENSHGLG00000004548	CHD6	100	89.232	Heterocephalus_glaber_female
ENSSSCG00000007360	CHD6	100	89.776	ENSHGLG00100006401	CHD6	100	89.232	Heterocephalus_glaber_male
ENSSSCG00000007360	CHD6	77	77.635	ENSIPUG00000003692	chd6	75	77.048	Ictalurus_punctatus
ENSSSCG00000007360	CHD6	100	91.282	ENSSTOG00000013382	CHD6	100	90.368	Ictidomys_tridecemlineatus
ENSSSCG00000007360	CHD6	90	73.815	ENSLACG00000010881	CHD6	88	74.060	Latimeria_chalumnae
ENSSSCG00000007360	CHD6	73	80.448	ENSLOCG00000007386	chd6	85	75.814	Lepisosteus_oculatus
ENSSSCG00000007360	CHD6	100	91.242	ENSLAFG00000012144	CHD6	100	90.445	Loxodonta_africana
ENSSSCG00000007360	CHD6	100	91.634	ENSMFAG00000032830	CHD6	99	93.394	Macaca_fascicularis
ENSSSCG00000007360	CHD6	100	91.634	ENSMMUG00000020458	CHD6	99	93.394	Macaca_mulatta
ENSSSCG00000007360	CHD6	100	91.634	ENSMNEG00000040847	CHD6	99	93.394	Macaca_nemestrina
ENSSSCG00000007360	CHD6	100	91.297	ENSMLEG00000031965	CHD6	99	93.394	Mandrillus_leucophaeus
ENSSSCG00000007360	CHD6	75	73.866	ENSMAMG00000013111	chd6	63	77.793	Mastacembelus_armatus
ENSSSCG00000007360	CHD6	99	73.448	ENSMGAG00000001121	CHD6	99	72.057	Meleagris_gallopavo
ENSSSCG00000007360	CHD6	100	91.061	ENSMICG00000016641	CHD6	99	93.028	Microcebus_murinus
ENSSSCG00000007360	CHD6	90	79.934	ENSMODG00000000720	-	99	79.975	Monodelphis_domestica
ENSSSCG00000007360	CHD6	100	87.311	MGP_CAROLIEiJ_G0024604	Chd6	100	93.502	Mus_caroli
ENSSSCG00000007360	CHD6	100	87.570	ENSMUSG00000057133	Chd6	100	93.418	Mus_musculus
ENSSSCG00000007360	CHD6	100	87.441	MGP_PahariEiJ_G0026048	Chd6	100	93.840	Mus_pahari
ENSSSCG00000007360	CHD6	100	87.656	MGP_SPRETEiJ_G0025526	Chd6	100	93.502	Mus_spretus
ENSSSCG00000007360	CHD6	100	91.649	ENSMPUG00000017695	CHD6	100	90.682	Mustela_putorius_furo
ENSSSCG00000007360	CHD6	100	92.145	ENSMLUG00000016247	CHD6	100	91.324	Myotis_lucifugus
ENSSSCG00000007360	CHD6	76	73.303	ENSNBRG00000013839	chd6	79	73.743	Neolamprologus_brichardi
ENSSSCG00000007360	CHD6	100	90.134	ENSNLEG00000006496	CHD6	100	88.987	Nomascus_leucogenys
ENSSSCG00000007360	CHD6	100	86.836	ENSOPRG00000013376	-	100	86.103	Ochotona_princeps
ENSSSCG00000007360	CHD6	83	74.745	ENSONIG00000000393	chd6	86	74.745	Oreochromis_niloticus
ENSSSCG00000007360	CHD6	98	77.574	ENSOANG00000014347	CHD6	93	77.745	Ornithorhynchus_anatinus
ENSSSCG00000007360	CHD6	99	89.075	ENSOCUG00000012394	CHD6	100	89.075	Oryctolagus_cuniculus
ENSSSCG00000007360	CHD6	78	70.318	ENSORLG00020021891	chd6	95	85.972	Oryzias_latipes_hni
ENSSSCG00000007360	CHD6	99	90.004	ENSOGAG00000002427	CHD6	99	89.216	Otolemur_garnettii
ENSSSCG00000007360	CHD6	99	89.244	ENSOARG00000002597	CHD6	100	88.346	Ovis_aries
ENSSSCG00000007360	CHD6	100	92.919	ENSPPRG00000014756	CHD6	100	92.203	Panthera_pardus
ENSSSCG00000007360	CHD6	100	92.746	ENSPTIG00000011094	CHD6	100	92.056	Panthera_tigris_altaica
ENSSSCG00000007360	CHD6	100	91.764	ENSPTRG00000013504	CHD6	99	93.394	Pan_troglodytes
ENSSSCG00000007360	CHD6	100	91.764	ENSPANG00000025554	CHD6	99	93.578	Papio_anubis
ENSSSCG00000007360	CHD6	76	77.282	ENSPKIG00000005578	chd6	80	72.777	Paramormyrops_kingsleyae
ENSSSCG00000007360	CHD6	77	77.217	ENSPMGG00000014877	chd6	90	77.184	Periophthalmus_magnuspinnatus
ENSSSCG00000007360	CHD6	100	80.715	ENSPCIG00000028037	CHD6	100	79.604	Phascolarctos_cinereus
ENSSSCG00000007360	CHD6	76	70.237	ENSPLAG00000003128	chd6	64	73.205	Poecilia_latipinna
ENSSSCG00000007360	CHD6	71	73.124	ENSPREG00000022653	chd6	99	86.447	Poecilia_reticulata
ENSSSCG00000007360	CHD6	100	91.850	ENSPPYG00000011016	CHD6	100	90.856	Pongo_abelii
ENSSSCG00000007360	CHD6	100	91.368	ENSPCOG00000001089	CHD6	99	93.211	Propithecus_coquereli
ENSSSCG00000007360	CHD6	76	75.081	ENSPNYG00000022516	chd6	79	75.033	Pundamilia_nyererei
ENSSSCG00000007360	CHD6	76	75.298	ENSPNAG00000012825	chd6	75	74.918	Pygocentrus_nattereri
ENSSSCG00000007360	CHD6	100	87.009	ENSRNOG00000016744	Chd6	100	85.993	Rattus_norvegicus
ENSSSCG00000007360	CHD6	100	91.031	ENSSBOG00000022089	CHD6	99	93.394	Saimiri_boliviensis_boliviensis
ENSSSCG00000007360	CHD6	100	80.645	ENSSHAG00000017072	CHD6	99	79.361	Sarcophilus_harrisii
ENSSSCG00000007360	CHD6	78	76.302	ENSSFOG00015012920	chd6	77	76.252	Scleropages_formosus
ENSSSCG00000007360	CHD6	59	99.342	ENSSARG00000002615	-	61	99.342	Sorex_araneus
ENSSSCG00000007360	CHD6	97	73.584	ENSTGUG00000003179	CHD6	99	73.478	Taeniopygia_guttata
ENSSSCG00000007360	CHD6	74	76.231	ENSTNIG00000017487	chd6	84	76.231	Tetraodon_nigroviridis
ENSSSCG00000007360	CHD6	100	91.199	ENSTTRG00000013438	CHD6	100	90.775	Tursiops_truncatus
ENSSSCG00000007360	CHD6	99	91.020	ENSUAMG00000024036	CHD6	95	96.139	Ursus_americanus
ENSSSCG00000007360	CHD6	99	92.708	ENSUMAG00000002017	CHD6	95	96.139	Ursus_maritimus
ENSSSCG00000007360	CHD6	94	90.995	ENSVPAG00000007941	CHD6	93	90.995	Vicugna_pacos
ENSSSCG00000007360	CHD6	100	92.703	ENSVVUG00000029164	CHD6	100	92.056	Vulpes_vulpes
ENSSSCG00000007360	CHD6	91	69.854	ENSXETG00000021445	chd6	88	69.860	Xenopus_tropicalis