EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSSCG00000007382 (Gene tree)
Gene ID
100151962
Gene Symbol
PABPC1L
Alias
C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name
poly(A) binding protein cytoplasmic 1 like
Gene Type
protein_coding
Species
Sus_scrofa
Status
putative
Strand
Plus strand
Length
29171 bases
Position
chr17:47321380-47350550
Accession
100151962
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSSCP00000007865PABPPF00658.181.2e-2611
ENSSSCP00000007865RRM_5PF13893.62.5e-0811
ENSSSCP00000007865RRM_1PF00076.221.3e-8914
ENSSSCP00000007865RRM_1PF00076.221.3e-8924
ENSSSCP00000007865RRM_1PF00076.221.3e-8934
ENSSSCP00000007865RRM_1PF00076.221.3e-8944
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSSCT00000008080PABPC1L-2011824XM_005672962ENSSSCP00000007865607 (aa)XP_005673019F1SDR6
Gene Model
Click here to download ENSSSCG00000007382's gene model file
Pathways
Pathway IDPathway NameSource
ssc03013RNA transportKEGG
ssc03015mRNA surveillance pathwayKEGG
ssc03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000007382's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSSCG00000007382PABPC1L6930.114ENSSSCG00000023409TIA19330.114
ENSSSCG00000007382PABPC1L6036.508ENSSSCG00000006665-5336.508
ENSSSCG00000007382PABPC1L5237.209ENSSSCG00000001928-7237.209
ENSSSCG00000007382PABPC1L5336.047ENSSSCG00000011121-6636.047
ENSSSCG00000007382PABPC1L6072.308ENSSSCG00000036336-9872.308
ENSSSCG00000007382PABPC1L9969.475ENSSSCG00000006063PABPC19869.475
ENSSSCG00000007382PABPC1L5165.306ENSSSCG00000033638-9465.306
ENSSSCG00000007382PABPC1L6630.682ENSSSCG00000010685-8030.682
ENSSSCG00000007382PABPC1L6330.319ENSSSCG00000031847RBM287930.319
ENSSSCG00000007382PABPC1L6260.955ENSSSCG00000040194PABPC59660.882
ENSSSCG00000007382PABPC1L9537.801ENSSSCG00000036199-9637.691
ENSSSCG00000007382PABPC1L6133.735ENSSSCG00000005130ELAVL29233.735
ENSSSCG00000007382PABPC1L6072.308ENSSSCG00000032167-9872.308
ENSSSCG00000007382PABPC1L5733.548ENSSSCG00000000288HNRNPA15333.548
ENSSSCG00000007382PABPC1L8734.982ENSSSCG00000036170-9234.982
ENSSSCG00000007382PABPC1L6359.459ENSSSCG00000009067PABPC4L9959.459
ENSSSCG00000007382PABPC1L6338.889ENSSSCG00000013617ELAVL39032.530
ENSSSCG00000007382PABPC1L5432.231ENSSSCG00000013233CELF16637.209
ENSSSCG00000007382PABPC1L9967.532ENSSSCG00000003660-9767.695
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSSCG00000007382PABPC1L9986.678ENSG00000101104PABPC1L9993.210Homo_sapiens
ENSSSCG00000007382PABPC1L9967.747ENSAPOG00000010842pabpc1l9967.585Acanthochromis_polyacanthus
ENSSSCG00000007382PABPC1L9978.154ENSAMEG00000004099PABPC1L10079.348Ailuropoda_melanoleuca
ENSSSCG00000007382PABPC1L9873.430ENSACIG00000021004-9973.430Amphilophus_citrinellus
ENSSSCG00000007382PABPC1L9966.720ENSAOCG00000006167-9966.773Amphiprion_ocellaris
ENSSSCG00000007382PABPC1L9969.683ENSAPEG00000010558-9877.419Amphiprion_percula
ENSSSCG00000007382PABPC1L9969.935ENSATEG00000007428pabpc1l9969.935Anabas_testudineus
ENSSSCG00000007382PABPC1L9872.859ENSAPLG00000008415PABPC1L9972.800Anas_platyrhynchos
ENSSSCG00000007382PABPC1L9972.843ENSACAG00000011841PABPC1L9972.843Anolis_carolinensis
ENSSSCG00000007382PABPC1L9984.704ENSANAG00000026826PABPC1L9984.704Aotus_nancymaae
ENSSSCG00000007382PABPC1L9968.421ENSACLG00000024791pabpc1l9968.421Astatotilapia_calliptera
ENSSSCG00000007382PABPC1L9970.673ENSAMXG00000013552pabpc1l9970.673Astyanax_mexicanus
ENSSSCG00000007382PABPC1L6778.777ENSBTAG00000016849PABPC1L8578.777Bos_taurus
ENSSSCG00000007382PABPC1L6098.214ENSBTAG00000055300-10098.214Bos_taurus
ENSSSCG00000007382PABPC1L9984.868ENSCJAG00000017628PABPC1L9984.868Callithrix_jacchus
ENSSSCG00000007382PABPC1L6077.586ENSCJAG00000038506-10077.586Callithrix_jacchus
ENSSSCG00000007382PABPC1L9976.899ENSCAFG00000009573PABPC1L10076.899Canis_familiaris
ENSSSCG00000007382PABPC1L9988.506ENSCAFG00020013828PABPC1L9988.506Canis_lupus_dingo
ENSSSCG00000007382PABPC1L9888.870ENSCHIG00000025759PABPC1L9188.870Capra_hircus
ENSSSCG00000007382PABPC1L9983.633ENSTSYG00000006645PABPC1L9983.633Carlito_syrichta
ENSSSCG00000007382PABPC1L9876.155ENSCAPG00000014519PABPC1L9976.155Cavia_aperea
ENSSSCG00000007382PABPC1L9979.316ENSCPOG00000013633PABPC1L9979.316Cavia_porcellus
ENSSSCG00000007382PABPC1L9984.704ENSCCAG00000023338PABPC1L9984.704Cebus_capucinus
ENSSSCG00000007382PABPC1L9986.842ENSCATG00000034065PABPC1L9987.007Cercocebus_atys
ENSSSCG00000007382PABPC1L9979.967ENSCLAG00000005298PABPC1L9979.805Chinchilla_lanigera
ENSSSCG00000007382PABPC1L9986.678ENSCSAG00000014242PABPC1L9986.842Chlorocebus_sabaeus
ENSSSCG00000007382PABPC1L7283.258ENSCPBG00000017755-9983.258Chrysemys_picta_bellii
ENSSSCG00000007382PABPC1L5479.545ENSCPBG00000007810-8379.545Chrysemys_picta_bellii
ENSSSCG00000007382PABPC1L8472.941ENSCING00000002796-9748.485Ciona_intestinalis
ENSSSCG00000007382PABPC1L9959.032ENSCSAVG00000004246-8969.474Ciona_savignyi
ENSSSCG00000007382PABPC1L9956.467ENSCSAVG00000003102-10080.822Ciona_savignyi
ENSSSCG00000007382PABPC1L9982.820ENSCANG00000037530PABPC1L9982.820Colobus_angolensis_palliatus
ENSSSCG00000007382PABPC1L9974.020ENSCGRG00001021938Pabpc1l9974.020Cricetulus_griseus_chok1gshd
ENSSSCG00000007382PABPC1L9974.020ENSCGRG00000007946Pabpc1l9974.020Cricetulus_griseus_crigri
ENSSSCG00000007382PABPC1L9965.109ENSCSEG00000021295pabpc1l9965.109Cynoglossus_semilaevis
ENSSSCG00000007382PABPC1L9968.336ENSCVAG00000015943-8687.023Cyprinodon_variegatus
ENSSSCG00000007382PABPC1L9970.323ENSDARG00000002597pabpc1l8887.692Danio_rerio
ENSSSCG00000007382PABPC1L9986.184ENSDNOG00000048450PABPC1L9986.184Dasypus_novemcinctus
ENSSSCG00000007382PABPC1L9982.867ENSDORG00000001067Pabpc1l9982.867Dipodomys_ordii
ENSSSCG00000007382PABPC1L9589.837ENSETEG00000009969PABPC1L7289.837Echinops_telfairi
ENSSSCG00000007382PABPC1L5978.500ENSEASG00005023407-8178.500Equus_asinus_asinus
ENSSSCG00000007382PABPC1L6097.619ENSEASG00005023408-10097.619Equus_asinus_asinus
ENSSSCG00000007382PABPC1L6984.454ENSECAG00000040139-8584.454Equus_caballus
ENSSSCG00000007382PABPC1L9982.651ENSEEUG00000005978PABPC1L9982.651Erinaceus_europaeus
ENSSSCG00000007382PABPC1L9969.365ENSELUG00000001811pabpc1l9969.365Esox_lucius
ENSSSCG00000007382PABPC1L9988.506ENSFCAG00000011692PABPC1L9988.506Felis_catus
ENSSSCG00000007382PABPC1L8775.373ENSFALG00000005372PABPC1L9771.528Ficedula_albicollis
ENSSSCG00000007382PABPC1L9979.538ENSFDAG00000008291PABPC1L9979.538Fukomys_damarensis
ENSSSCG00000007382PABPC1L9968.710ENSFHEG00000003398pabpc1l9968.710Fundulus_heteroclitus
ENSSSCG00000007382PABPC1L9969.467ENSGMOG00000004437pabpc1l9869.467Gadus_morhua
ENSSSCG00000007382PABPC1L9870.345ENSGALG00000004123PABPC1L9984.412Gallus_gallus
ENSSSCG00000007382PABPC1L9964.165ENSGAFG00000021057pabpc1l9964.165Gambusia_affinis
ENSSSCG00000007382PABPC1L9967.252ENSGACG00000002792pabpc1l9967.252Gasterosteus_aculeatus
ENSSSCG00000007382PABPC1L9974.801ENSGAGG00000000589PABPC1L9874.801Gopherus_agassizii
ENSSSCG00000007382PABPC1L9985.855ENSGGOG00000004584PABPC1L9986.842Gorilla_gorilla
ENSSSCG00000007382PABPC1L9968.262ENSHBUG00000006134pabpc1l9968.262Haplochromis_burtoni
ENSSSCG00000007382PABPC1L9980.619ENSHGLG00000008434PABPC1L9980.619Heterocephalus_glaber_female
ENSSSCG00000007382PABPC1L9980.619ENSHGLG00100012151PABPC1L9980.619Heterocephalus_glaber_male
ENSSSCG00000007382PABPC1L5982.584ENSHGLG00100019506-10082.584Heterocephalus_glaber_male
ENSSSCG00000007382PABPC1L9967.221ENSHCOG00000009270pabpc1l9967.221Hippocampus_comes
ENSSSCG00000007382PABPC1L9970.223ENSIPUG00000012602pabpc1l9970.223Ictalurus_punctatus
ENSSSCG00000007382PABPC1L6060.345ENSIPUG00000006760-8860.345Ictalurus_punctatus
ENSSSCG00000007382PABPC1L6060.920ENSIPUG00000006780-8560.920Ictalurus_punctatus
ENSSSCG00000007382PABPC1L5463.077ENSIPUG00000005537-10063.077Ictalurus_punctatus
ENSSSCG00000007382PABPC1L9984.539ENSSTOG00000003739PABPC1L9984.539Ictidomys_tridecemlineatus
ENSSSCG00000007382PABPC1L9965.505ENSJJAG00000022406Pabpc1l9963.175Jaculus_jaculus
ENSSSCG00000007382PABPC1L9968.954ENSKMAG00000016847pabpc1l9968.954Kryptolebias_marmoratus
ENSSSCG00000007382PABPC1L9967.302ENSLBEG00000010084pabpc1l9967.302Labrus_bergylta
ENSSSCG00000007382PABPC1L9968.603ENSLACG00000005762PABPC1L9970.438Latimeria_chalumnae
ENSSSCG00000007382PABPC1L9971.565ENSLOCG00000007519pabpc1l9871.565Lepisosteus_oculatus
ENSSSCG00000007382PABPC1L9982.051ENSLAFG00000003553PABPC1L10082.051Loxodonta_africana
ENSSSCG00000007382PABPC1L9986.678ENSMFAG00000040365PABPC1L9986.842Macaca_fascicularis
ENSSSCG00000007382PABPC1L9983.987ENSMNEG00000032298PABPC1L9984.314Macaca_nemestrina
ENSSSCG00000007382PABPC1L9986.842ENSMLEG00000043139PABPC1L9987.007Mandrillus_leucophaeus
ENSSSCG00000007382PABPC1L9866.830ENSMAMG00000011854pabpc1l9866.830Mastacembelus_armatus
ENSSSCG00000007382PABPC1L9968.421ENSMZEG00005023713pabpc1l9968.421Maylandia_zebra
ENSSSCG00000007382PABPC1L9974.038ENSMGAG00000003674PABPC1L9974.038Meleagris_gallopavo
ENSSSCG00000007382PABPC1L9973.529ENSMOCG00000013186Pabpc1l9973.529Microtus_ochrogaster
ENSSSCG00000007382PABPC1L9968.328ENSMMOG00000020574-9087.692Mola_mola
ENSSSCG00000007382PABPC1L9477.202ENSMODG00000016198PABPC1L9977.349Monodelphis_domestica
ENSSSCG00000007382PABPC1L9766.503ENSMALG00000021622pabpc1l10066.503Monopterus_albus
ENSSSCG00000007382PABPC1L9974.673MGP_CAROLIEiJ_G0024627Pabpc1l9974.673Mus_caroli
ENSSSCG00000007382PABPC1L9974.510ENSMUSG00000054582Pabpc1l9974.510Mus_musculus
ENSSSCG00000007382PABPC1L9974.551MGP_PahariEiJ_G0026071Pabpc1l9974.551Mus_pahari
ENSSSCG00000007382PABPC1L9974.673MGP_SPRETEiJ_G0025549Pabpc1l9974.673Mus_spretus
ENSSSCG00000007382PABPC1L9986.084ENSMPUG00000017646PABPC1L9986.084Mustela_putorius_furo
ENSSSCG00000007382PABPC1L9878.837ENSMLUG00000006324PABPC1L9878.837Myotis_lucifugus
ENSSSCG00000007382PABPC1L9976.471ENSNGAG00000010458Pabpc1l9976.471Nannospalax_galili
ENSSSCG00000007382PABPC1L9968.810ENSNBRG00000016633pabpc1l9968.810Neolamprologus_brichardi
ENSSSCG00000007382PABPC1L9966.446ENSMEUG00000007905-9966.446Notamacropus_eugenii
ENSSSCG00000007382PABPC1L9983.908ENSOPRG00000011846PABPC1L9983.908Ochotona_princeps
ENSSSCG00000007382PABPC1L5975.625ENSODEG00000002920-9775.625Octodon_degus
ENSSSCG00000007382PABPC1L9974.129ENSODEG00000015482PABPC1L9974.129Octodon_degus
ENSSSCG00000007382PABPC1L9968.421ENSONIG00000017314pabpc1l9968.421Oreochromis_niloticus
ENSSSCG00000007382PABPC1L9066.727ENSOANG00000015793-10066.727Ornithorhynchus_anatinus
ENSSSCG00000007382PABPC1L9977.504ENSOCUG00000003005PABPC1L10078.274Oryctolagus_cuniculus
ENSSSCG00000007382PABPC1L9870.776ENSORLG00000010322pabpc1l9970.776Oryzias_latipes
ENSSSCG00000007382PABPC1L9870.776ENSORLG00020021193pabpc1l9970.776Oryzias_latipes_hni
ENSSSCG00000007382PABPC1L9870.776ENSORLG00015017018pabpc1l9970.776Oryzias_latipes_hsok
ENSSSCG00000007382PABPC1L9964.177ENSOMEG00000010789pabpc1l9964.177Oryzias_melastigma
ENSSSCG00000007382PABPC1L9983.040ENSOGAG00000032999PABPC1L9983.040Otolemur_garnettii
ENSSSCG00000007382PABPC1L10088.072ENSOARG00000004578PABPC1L9988.072Ovis_aries
ENSSSCG00000007382PABPC1L9986.513ENSPPAG00000039677PABPC1L9986.513Pan_paniscus
ENSSSCG00000007382PABPC1L6481.790ENSPPRG00000019327-9881.790Panthera_pardus
ENSSSCG00000007382PABPC1L9988.391ENSPTIG00000006524PABPC1L9988.391Panthera_tigris_altaica
ENSSSCG00000007382PABPC1L6492.901ENSPTRG00000013531PABPC1L9992.901Pan_troglodytes
ENSSSCG00000007382PABPC1L9986.842ENSPANG00000018788PABPC1L9987.007Papio_anubis
ENSSSCG00000007382PABPC1L5483.206ENSPKIG00000016810-9383.206Paramormyrops_kingsleyae
ENSSSCG00000007382PABPC1L9970.900ENSPKIG00000007322pabpc1l9970.900Paramormyrops_kingsleyae
ENSSSCG00000007382PABPC1L6984.726ENSPSIG00000013289PABPC1L9984.726Pelodiscus_sinensis
ENSSSCG00000007382PABPC1L6486.364ENSPMGG00000023117pabpc1l9286.364Periophthalmus_magnuspinnatus
ENSSSCG00000007382PABPC1L7171.649ENSPMGG00000023121-9071.649Periophthalmus_magnuspinnatus
ENSSSCG00000007382PABPC1L9974.020ENSPEMG00000020671Pabpc1l9973.779Peromyscus_maniculatus_bairdii
ENSSSCG00000007382PABPC1L9968.567ENSPFOG00000013241pabpc1l9868.567Poecilia_formosa
ENSSSCG00000007382PABPC1L9967.496ENSPLAG00000017490-9967.496Poecilia_latipinna
ENSSSCG00000007382PABPC1L5488.462ENSPLAG00000023686-9288.462Poecilia_latipinna
ENSSSCG00000007382PABPC1L9968.618ENSPMEG00000007677pabpc1l9968.618Poecilia_mexicana
ENSSSCG00000007382PABPC1L5488.462ENSPMEG00000009185-8888.462Poecilia_mexicana
ENSSSCG00000007382PABPC1L6876.755ENSPREG00000015886pabpc1l9976.755Poecilia_reticulata
ENSSSCG00000007382PABPC1L9986.513ENSPPYG00000011042PABPC1L9986.678Pongo_abelii
ENSSSCG00000007382PABPC1L6295.312ENSPCAG00000011787-7595.312Procavia_capensis
ENSSSCG00000007382PABPC1L9985.082ENSPCOG00000020630PABPC1L10085.082Propithecus_coquereli
ENSSSCG00000007382PABPC1L9984.893ENSPVAG00000012663PABPC1L9984.893Pteropus_vampyrus
ENSSSCG00000007382PABPC1L9967.705ENSPNYG00000004101pabpc1l9967.705Pundamilia_nyererei
ENSSSCG00000007382PABPC1L9963.826ENSPNAG00000021248pabpc1l9963.826Pygocentrus_nattereri
ENSSSCG00000007382PABPC1L9974.590ENSRNOG00000012750Pabpc1l9974.346Rattus_norvegicus
ENSSSCG00000007382PABPC1L9986.678ENSRBIG00000035381PABPC1L9986.678Rhinopithecus_bieti
ENSSSCG00000007382PABPC1L9986.513ENSRROG00000044498PABPC1L9986.513Rhinopithecus_roxellana
ENSSSCG00000007382PABPC1L9984.539ENSSBOG00000009532-9984.539Saimiri_boliviensis_boliviensis
ENSSSCG00000007382PABPC1L9869.405ENSSHAG00000011446PABPC1L10069.405Sarcophilus_harrisii
ENSSSCG00000007382PABPC1L9972.303ENSSFOG00015017304pabpc1l9972.303Scleropages_formosus
ENSSSCG00000007382PABPC1L9968.336ENSSMAG00000010516pabpc1l9887.597Scophthalmus_maximus
ENSSSCG00000007382PABPC1L9968.153ENSSDUG00000014743pabpc1l9968.153Seriola_dumerili
ENSSSCG00000007382PABPC1L9871.719ENSSLDG00000006981pabpc1l9881.340Seriola_lalandi_dorsalis
ENSSSCG00000007382PABPC1L9971.949ENSSPUG00000004233PABPC1L9971.949Sphenodon_punctatus
ENSSSCG00000007382PABPC1L9966.667ENSSPAG00000017137pabpc1l9966.667Stegastes_partitus
ENSSSCG00000007382PABPC1L9973.186ENSTGUG00000005114PABPC1L9973.186Taeniopygia_guttata
ENSSSCG00000007382PABPC1L9768.189ENSTRUG00000011085pabpc1l9768.189Takifugu_rubripes
ENSSSCG00000007382PABPC1L9965.865ENSTNIG00000017903pabpc1l9965.865Tetraodon_nigroviridis
ENSSSCG00000007382PABPC1L9494.178ENSTBEG00000002851PABPC1L7994.178Tupaia_belangeri
ENSSSCG00000007382PABPC1L9490.244ENSTTRG00000007618PABPC1L10090.339Tursiops_truncatus
ENSSSCG00000007382PABPC1L9985.386ENSUAMG00000017682PABPC1L9985.386Ursus_americanus
ENSSSCG00000007382PABPC1L6892.521ENSUMAG00000025436PABPC1L9292.521Ursus_maritimus
ENSSSCG00000007382PABPC1L9894.071ENSVVUG00000018939PABPC1L9894.071Vulpes_vulpes
ENSSSCG00000007382PABPC1L9968.640ENSXETG00000022831pabpc1l9868.640Xenopus_tropicalis
ENSSSCG00000007382PABPC1L9967.799ENSXCOG00000005459pabpc1l9983.688Xiphophorus_couchianus
ENSSSCG00000007382PABPC1L9967.496ENSXMAG00000017135pabpc1l9967.496Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us