EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000007504 (Gene tree)
Gene ID: 100125973
Gene Symbol: RBM38
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA binding motif protein 38
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 14837 bases
Position: chr17:57783154-57797990
Accession: 100125973
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000007997	RRM_1	PF00076.22	1.7e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000008216	RBM38-201	2205	-	ENSSSCP00000007997	239 (aa)	-	A5GFN8

Gene Model

Click here to download ENSSSCG00000007504's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000007504's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000007504	RBM38	59	36.842	ENSSSCG00000029365	MSI1	68	36.842
ENSSSCG00000007504	RBM38	90	61.441	ENSSSCG00000038455	RBM24	100	68.908

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000007504	RBM38	100	97.071	ENSG00000132819	RBM38	100	98.347	Homo_sapiens
ENSSSCG00000007504	RBM38	91	67.421	ENSAPOG00000009939	-	94	68.468	Acanthochromis_polyacanthus
ENSSSCG00000007504	RBM38	89	59.483	ENSAPOG00000003301	rbm38	91	59.483	Acanthochromis_polyacanthus
ENSSSCG00000007504	RBM38	89	68.664	ENSACIG00000012502	-	100	88.034	Amphilophus_citrinellus
ENSSSCG00000007504	RBM38	89	57.511	ENSACIG00000000010	rbm38	91	57.511	Amphilophus_citrinellus
ENSSSCG00000007504	RBM38	89	59.483	ENSAOCG00000013497	-	91	59.483	Amphiprion_ocellaris
ENSSSCG00000007504	RBM38	99	63.636	ENSAOCG00000012559	RBM38	99	64.754	Amphiprion_ocellaris
ENSSSCG00000007504	RBM38	99	60.656	ENSAPEG00000013137	rbm38	99	60.656	Amphiprion_percula
ENSSSCG00000007504	RBM38	91	64.286	ENSAPEG00000023581	-	95	65.401	Amphiprion_percula
ENSSSCG00000007504	RBM38	89	64.783	ENSATEG00000016710	-	92	65.801	Anabas_testudineus
ENSSSCG00000007504	RBM38	90	60.714	ENSATEG00000016366	rbm38	94	60.714	Anabas_testudineus
ENSSSCG00000007504	RBM38	91	78.636	ENSACAG00000016238	RBM38	97	75.000	Anolis_carolinensis
ENSSSCG00000007504	RBM38	90	95.833	ENSANAG00000031959	RBM38	100	99.174	Aotus_nancymaae
ENSSSCG00000007504	RBM38	89	66.087	ENSACLG00000019514	-	92	66.234	Astatotilapia_calliptera
ENSSSCG00000007504	RBM38	91	67.391	ENSAMXG00000015601	-	95	68.261	Astyanax_mexicanus
ENSSSCG00000007504	RBM38	88	57.207	ENSAMXG00000038120	rbm38	92	57.658	Astyanax_mexicanus
ENSSSCG00000007504	RBM38	100	96.653	ENSBTAG00000008105	RBM38	100	96.653	Bos_taurus
ENSSSCG00000007504	RBM38	58	60.870	WBGene00006321	sup-12	59	84.270	Caenorhabditis_elegans
ENSSSCG00000007504	RBM38	100	96.234	ENSCJAG00000019139	RBM38	100	99.174	Callithrix_jacchus
ENSSSCG00000007504	RBM38	100	97.908	ENSCAFG00020021943	RBM38	100	97.908	Canis_lupus_dingo
ENSSSCG00000007504	RBM38	100	95.816	ENSCHIG00000002609	RBM38	100	95.816	Capra_hircus
ENSSSCG00000007504	RBM38	100	96.653	ENSCPOG00000012781	RBM38	100	96.653	Cavia_porcellus
ENSSSCG00000007504	RBM38	100	96.234	ENSCCAG00000036872	RBM38	100	99.174	Cebus_capucinus
ENSSSCG00000007504	RBM38	100	96.653	ENSCATG00000032133	RBM38	100	99.174	Cercocebus_atys
ENSSSCG00000007504	RBM38	96	95.652	ENSCLAG00000005906	RBM38	100	95.652	Chinchilla_lanigera
ENSSSCG00000007504	RBM38	100	96.653	ENSCSAG00000015503	RBM38	100	96.653	Chlorocebus_sabaeus
ENSSSCG00000007504	RBM38	90	82.569	ENSCPBG00000024059	RBM38	100	82.569	Chrysemys_picta_bellii
ENSSSCG00000007504	RBM38	99	73.950	ENSCANG00000030105	-	89	73.950	Colobus_angolensis_palliatus
ENSSSCG00000007504	RBM38	100	91.213	ENSCGRG00001012928	Rbm38	100	91.213	Cricetulus_griseus_chok1gshd
ENSSSCG00000007504	RBM38	62	67.333	ENSCSEG00000020943	rbm38	60	60.870	Cynoglossus_semilaevis
ENSSSCG00000007504	RBM38	89	69.725	ENSCSEG00000004701	-	93	70.320	Cynoglossus_semilaevis
ENSSSCG00000007504	RBM38	88	58.621	ENSCVAG00000015952	rbm38	91	59.227	Cyprinodon_variegatus
ENSSSCG00000007504	RBM38	89	66.234	ENSCVAG00000005472	-	92	66.234	Cyprinodon_variegatus
ENSSSCG00000007504	RBM38	88	65.022	ENSDARG00000058818	rbm38	92	65.022	Danio_rerio
ENSSSCG00000007504	RBM38	90	89.815	ENSDNOG00000032004	RBM38	100	89.815	Dasypus_novemcinctus
ENSSSCG00000007504	RBM38	61	67.123	ENSEBUG00000015164	rbm38	88	67.123	Eptatretus_burgeri
ENSSSCG00000007504	RBM38	100	96.234	ENSECAG00000007700	RBM38	100	96.234	Equus_caballus
ENSSSCG00000007504	RBM38	100	93.333	ENSEEUG00000013489	RBM38	100	94.583	Erinaceus_europaeus
ENSSSCG00000007504	RBM38	90	65.678	ENSELUG00000005849	-	95	65.678	Esox_lucius
ENSSSCG00000007504	RBM38	84	65.672	ENSELUG00000000585	-	87	65.672	Esox_lucius
ENSSSCG00000007504	RBM38	100	97.908	ENSFCAG00000042916	RBM38	100	99.174	Felis_catus
ENSSSCG00000007504	RBM38	74	83.708	ENSFALG00000010805	RBM38	93	83.799	Ficedula_albicollis
ENSSSCG00000007504	RBM38	89	57.511	ENSFHEG00000017748	rbm38	91	57.511	Fundulus_heteroclitus
ENSSSCG00000007504	RBM38	89	71.163	ENSFHEG00000006160	-	92	71.163	Fundulus_heteroclitus
ENSSSCG00000007504	RBM38	75	70.718	ENSGMOG00000016655	-	96	74.176	Gadus_morhua
ENSSSCG00000007504	RBM38	90	80.734	ENSGALG00000026081	RBM38	100	80.734	Gallus_gallus
ENSSSCG00000007504	RBM38	89	62.736	ENSGACG00000015224	rbm38	98	62.736	Gasterosteus_aculeatus
ENSSSCG00000007504	RBM38	90	67.265	ENSGACG00000009873	-	100	66.964	Gasterosteus_aculeatus
ENSSSCG00000007504	RBM38	90	83.028	ENSGAGG00000001187	RBM38	100	83.028	Gopherus_agassizii
ENSSSCG00000007504	RBM38	96	58.996	ENSHBUG00000012058	rbm38	98	58.996	Haplochromis_burtoni
ENSSSCG00000007504	RBM38	89	70.046	ENSHBUG00000011778	-	92	70.183	Haplochromis_burtoni
ENSSSCG00000007504	RBM38	100	91.632	ENSHGLG00000015077	RBM38	100	91.632	Heterocephalus_glaber_female
ENSSSCG00000007504	RBM38	87	55.189	ENSHCOG00000019040	rbm38	88	55.189	Hippocampus_comes
ENSSSCG00000007504	RBM38	79	71.354	ENSHCOG00000005622	-	54	72.396	Hippocampus_comes
ENSSSCG00000007504	RBM38	91	66.810	ENSIPUG00000019349	-	95	66.810	Ictalurus_punctatus
ENSSSCG00000007504	RBM38	88	54.237	ENSKMAG00000012402	rbm38	98	54.661	Kryptolebias_marmoratus
ENSSSCG00000007504	RBM38	89	58.798	ENSLBEG00000018878	rbm38	91	58.798	Labrus_bergylta
ENSSSCG00000007504	RBM38	89	69.124	ENSLBEG00000016163	RBM38	92	69.725	Labrus_bergylta
ENSSSCG00000007504	RBM38	91	72.000	ENSLOCG00000003456	rbm38	95	72.000	Lepisosteus_oculatus
ENSSSCG00000007504	RBM38	98	96.596	ENSMFAG00000043808	RBM38	97	99.145	Macaca_fascicularis
ENSSSCG00000007504	RBM38	100	96.653	ENSMMUG00000031391	RBM38	100	99.174	Macaca_mulatta
ENSSSCG00000007504	RBM38	100	96.653	ENSMNEG00000034683	RBM38	100	99.174	Macaca_nemestrina
ENSSSCG00000007504	RBM38	91	64.135	ENSMAMG00000020499	RBM38	95	65.823	Mastacembelus_armatus
ENSSSCG00000007504	RBM38	89	59.657	ENSMAMG00000024135	rbm38	91	59.657	Mastacembelus_armatus
ENSSSCG00000007504	RBM38	89	57.940	ENSMZEG00005026036	rbm38	91	57.940	Maylandia_zebra
ENSSSCG00000007504	RBM38	89	70.046	ENSMZEG00005000849	-	92	70.183	Maylandia_zebra
ENSSSCG00000007504	RBM38	100	91.632	ENSMAUG00000021211	Rbm38	100	91.632	Mesocricetus_auratus
ENSSSCG00000007504	RBM38	90	96.759	ENSMICG00000038011	RBM38	100	96.759	Microcebus_murinus
ENSSSCG00000007504	RBM38	100	90.795	ENSMOCG00000008715	Rbm38	100	90.795	Microtus_ochrogaster
ENSSSCG00000007504	RBM38	99	65.966	ENSMMOG00000020051	-	99	66.109	Mola_mola
ENSSSCG00000007504	RBM38	100	80.498	ENSMODG00000016458	RBM38	100	80.498	Monodelphis_domestica
ENSSSCG00000007504	RBM38	77	73.016	ENSMALG00000004680	RBM38	70	73.016	Monopterus_albus
ENSSSCG00000007504	RBM38	64	69.677	ENSMALG00000022327	rbm38	67	69.677	Monopterus_albus
ENSSSCG00000007504	RBM38	100	92.469	MGP_CAROLIEiJ_G0024745	Rbm38	100	92.469	Mus_caroli
ENSSSCG00000007504	RBM38	100	92.887	ENSMUSG00000027510	Rbm38	100	92.887	Mus_musculus
ENSSSCG00000007504	RBM38	100	92.050	MGP_PahariEiJ_G0026186	Rbm38	100	92.050	Mus_pahari
ENSSSCG00000007504	RBM38	100	92.469	MGP_SPRETEiJ_G0025665	Rbm38	100	92.469	Mus_spretus
ENSSSCG00000007504	RBM38	78	98.930	ENSMPUG00000006518	RBM38	93	98.930	Mustela_putorius_furo
ENSSSCG00000007504	RBM38	90	92.130	ENSMLUG00000011140	RBM38	100	92.130	Myotis_lucifugus
ENSSSCG00000007504	RBM38	89	66.087	ENSNBRG00000022545	-	92	66.234	Neolamprologus_brichardi
ENSSSCG00000007504	RBM38	96	59.583	ENSNBRG00000022685	rbm38	98	59.583	Neolamprologus_brichardi
ENSSSCG00000007504	RBM38	58	79.710	ENSMEUG00000005475	-	100	79.710	Notamacropus_eugenii
ENSSSCG00000007504	RBM38	100	95.816	ENSODEG00000007980	RBM38	100	95.816	Octodon_degus
ENSSSCG00000007504	RBM38	88	58.190	ENSONIG00000017073	rbm38	93	58.190	Oreochromis_niloticus
ENSSSCG00000007504	RBM38	88	65.939	ENSONIG00000020324	-	92	66.087	Oreochromis_niloticus
ENSSSCG00000007504	RBM38	97	78.448	ENSOANG00000009259	RBM38	90	77.542	Ornithorhynchus_anatinus
ENSSSCG00000007504	RBM38	89	55.983	ENSORLG00000012154	rbm38	91	55.128	Oryzias_latipes
ENSSSCG00000007504	RBM38	89	64.655	ENSORLG00000027180	-	92	66.094	Oryzias_latipes
ENSSSCG00000007504	RBM38	89	64.655	ENSORLG00020020751	-	95	63.710	Oryzias_latipes_hni
ENSSSCG00000007504	RBM38	89	55.983	ENSORLG00020017871	rbm38	91	55.983	Oryzias_latipes_hni
ENSSSCG00000007504	RBM38	89	64.069	ENSORLG00015017040	-	92	66.379	Oryzias_latipes_hsok
ENSSSCG00000007504	RBM38	97	57.447	ENSORLG00015012606	rbm38	97	57.447	Oryzias_latipes_hsok
ENSSSCG00000007504	RBM38	89	64.069	ENSOMEG00000023912	-	92	65.368	Oryzias_melastigma
ENSSSCG00000007504	RBM38	89	55.556	ENSOMEG00000006805	rbm38	91	55.556	Oryzias_melastigma
ENSSSCG00000007504	RBM38	100	96.667	ENSOGAG00000029136	RBM38	100	96.667	Otolemur_garnettii
ENSSSCG00000007504	RBM38	100	97.908	ENSPPRG00000009507	RBM38	100	99.174	Panthera_pardus
ENSSSCG00000007504	RBM38	87	94.712	ENSPTRG00000013661	RBM38	100	98.347	Pan_troglodytes
ENSSSCG00000007504	RBM38	52	99.194	ENSPTRG00000045845	-	68	99.194	Pan_troglodytes
ENSSSCG00000007504	RBM38	99	73.529	ENSPANG00000033127	-	100	73.529	Papio_anubis
ENSSSCG00000007504	RBM38	100	96.653	ENSPANG00000020919	-	100	99.174	Papio_anubis
ENSSSCG00000007504	RBM38	94	64.344	ENSPKIG00000025417	rbm38	98	64.344	Paramormyrops_kingsleyae
ENSSSCG00000007504	RBM38	91	66.520	ENSPKIG00000018122	-	100	87.179	Paramormyrops_kingsleyae
ENSSSCG00000007504	RBM38	93	80.804	ENSPSIG00000011649	RBM38	95	80.804	Pelodiscus_sinensis
ENSSSCG00000007504	RBM38	89	62.393	ENSPMGG00000017094	-	92	62.979	Periophthalmus_magnuspinnatus
ENSSSCG00000007504	RBM38	90	56.067	ENSPMGG00000011343	rbm38	94	57.322	Periophthalmus_magnuspinnatus
ENSSSCG00000007504	RBM38	100	79.668	ENSPCIG00000013648	RBM38	100	79.668	Phascolarctos_cinereus
ENSSSCG00000007504	RBM38	89	55.556	ENSPFOG00000011658	rbm38	91	57.692	Poecilia_formosa
ENSSSCG00000007504	RBM38	89	65.532	ENSPLAG00000002500	-	92	67.234	Poecilia_latipinna
ENSSSCG00000007504	RBM38	89	56.410	ENSPLAG00000005218	rbm38	91	57.692	Poecilia_latipinna
ENSSSCG00000007504	RBM38	89	55.556	ENSPMEG00000015770	rbm38	91	57.692	Poecilia_mexicana
ENSSSCG00000007504	RBM38	89	55.983	ENSPREG00000007398	rbm38	91	58.120	Poecilia_reticulata
ENSSSCG00000007504	RBM38	100	96.667	ENSPCOG00000026201	RBM38	100	98.361	Propithecus_coquereli
ENSSSCG00000007504	RBM38	100	69.038	ENSPVAG00000006457	RBM38	100	69.038	Pteropus_vampyrus
ENSSSCG00000007504	RBM38	89	70.046	ENSPNYG00000019727	-	100	88.889	Pundamilia_nyererei
ENSSSCG00000007504	RBM38	96	58.650	ENSPNYG00000021373	rbm38	98	59.414	Pundamilia_nyererei
ENSSSCG00000007504	RBM38	91	67.391	ENSPNAG00000015123	-	96	77.273	Pygocentrus_nattereri
ENSSSCG00000007504	RBM38	89	62.500	ENSPNAG00000010596	rbm38	93	62.500	Pygocentrus_nattereri
ENSSSCG00000007504	RBM38	100	92.469	ENSRNOG00000006420	Rbm38	100	92.469	Rattus_norvegicus
ENSSSCG00000007504	RBM38	100	78.661	ENSRROG00000036388	-	100	78.661	Rhinopithecus_roxellana
ENSSSCG00000007504	RBM38	90	94.907	ENSSBOG00000031053	RBM38	100	99.065	Saimiri_boliviensis_boliviensis
ENSSSCG00000007504	RBM38	89	66.364	ENSSFOG00015004453	rbm38	92	68.636	Scleropages_formosus
ENSSSCG00000007504	RBM38	89	66.379	ENSSDUG00000021082	RBM38	92	66.810	Seriola_dumerili
ENSSSCG00000007504	RBM38	89	59.657	ENSSDUG00000022611	rbm38	91	59.657	Seriola_dumerili
ENSSSCG00000007504	RBM38	89	62.326	ENSSLDG00000010845	rbm38	90	62.326	Seriola_lalandi_dorsalis
ENSSSCG00000007504	RBM38	89	65.517	ENSSLDG00000011778	RBM38	92	65.948	Seriola_lalandi_dorsalis
ENSSSCG00000007504	RBM38	89	69.014	ENSSPAG00000020989	RBM38	91	69.626	Stegastes_partitus
ENSSSCG00000007504	RBM38	89	59.227	ENSSPAG00000011113	rbm38	91	59.227	Stegastes_partitus
ENSSSCG00000007504	RBM38	89	65.368	ENSTRUG00000019869	-	92	66.810	Takifugu_rubripes
ENSSSCG00000007504	RBM38	89	56.769	ENSTRUG00000024954	rbm38	91	56.332	Takifugu_rubripes
ENSSSCG00000007504	RBM38	89	69.545	ENSTNIG00000007093	-	97	70.136	Tetraodon_nigroviridis
ENSSSCG00000007504	RBM38	50	89.076	ENSTBEG00000001689	-	50	89.076	Tupaia_belangeri
ENSSSCG00000007504	RBM38	100	98.326	ENSUAMG00000019780	RBM38	100	98.326	Ursus_americanus
ENSSSCG00000007504	RBM38	100	97.908	ENSVVUG00000017246	RBM38	100	97.908	Vulpes_vulpes
ENSSSCG00000007504	RBM38	92	73.778	ENSXETG00000011268	rbm38	100	74.222	Xenopus_tropicalis
ENSSSCG00000007504	RBM38	89	57.940	ENSXMAG00000023662	rbm38	91	57.940	Xiphophorus_maculatus