EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000007622 (Gene tree)
Gene ID: 102160620
Gene Symbol: -
Alias: -
Full Name: pentatricopeptide repeat domain 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 17335 bases
Position: chr3:6357035-6374369
Accession: 102160620
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000038751	PPR	PF01535.20	2.7e-17	1	3
ENSSSCP00000038751	PPR	PF01535.20	2.7e-17	2	3
ENSSSCP00000038751	PPR	PF01535.20	2.7e-17	3	3
ENSSSCP00000008143	PPR	PF01535.20	7e-17	1	3
ENSSSCP00000008143	PPR	PF01535.20	7e-17	2	3
ENSSSCP00000008143	PPR	PF01535.20	7e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000008362	-	2619	-	ENSSSCP00000008143	740 (aa)	-	F1RNS9
ENSSSCT00000042221	-	6987	XM_013995398	ENSSSCP00000038751	666 (aa)	XP_013850852	A0A287A478

Gene Model

Click here to download ENSSSCG00000007622's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000007622's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000007622	-	99	77.410	ENSG00000248919	ATP5MF-PTCD1	87	77.948	Homo_sapiens
ENSSSCG00000007622	-	99	77.410	ENSG00000106246	PTCD1	93	77.948	Homo_sapiens
ENSSSCG00000007622	-	87	47.692	ENSAPOG00000010679	ptcd1	85	48.663	Acanthochromis_polyacanthus
ENSSSCG00000007622	-	99	83.891	ENSAMEG00000006224	-	86	83.871	Ailuropoda_melanoleuca
ENSSSCG00000007622	-	97	47.032	ENSACIG00000017861	ptcd1	85	49.333	Amphilophus_citrinellus
ENSSSCG00000007622	-	95	47.943	ENSAOCG00000020741	-	81	50.171	Amphiprion_ocellaris
ENSSSCG00000007622	-	90	47.264	ENSAOCG00000022617	ptcd1	81	49.551	Amphiprion_ocellaris
ENSSSCG00000007622	-	95	47.785	ENSAPEG00000022632	ptcd1	81	50.000	Amphiprion_percula
ENSSSCG00000007622	-	89	50.582	ENSATEG00000007016	ptcd1	80	50.427	Anabas_testudineus
ENSSSCG00000007622	-	89	60.768	ENSAPLG00000006862	-	93	60.768	Anas_platyrhynchos
ENSSSCG00000007622	-	99	56.716	ENSACAG00000012871	-	86	56.904	Anolis_carolinensis
ENSSSCG00000007622	-	97	77.932	ENSANAG00000035790	-	93	78.493	Aotus_nancymaae
ENSSSCG00000007622	-	88	49.746	ENSACLG00000002824	ptcd1	86	47.235	Astatotilapia_calliptera
ENSSSCG00000007622	-	91	47.956	ENSAMXG00000037292	ptcd1	88	48.195	Astyanax_mexicanus
ENSSSCG00000007622	-	99	84.858	ENSBTAG00000020440	-	81	85.100	Bos_taurus
ENSSSCG00000007622	-	99	78.163	ENSCJAG00000015815	-	93	78.560	Callithrix_jacchus
ENSSSCG00000007622	-	99	82.504	ENSCAFG00000015055	-	86	83.103	Canis_familiaris
ENSSSCG00000007622	-	99	82.406	ENSCAFG00020014480	-	86	83.103	Canis_lupus_dingo
ENSSSCG00000007622	-	99	83.208	ENSCHIG00000027000	-	92	83.564	Capra_hircus
ENSSSCG00000007622	-	96	80.218	ENSTSYG00000029495	-	92	80.093	Carlito_syrichta
ENSSSCG00000007622	-	99	76.631	ENSCAPG00000014660	-	99	76.994	Cavia_aperea
ENSSSCG00000007622	-	99	77.074	ENSCPOG00000001780	-	92	77.761	Cavia_porcellus
ENSSSCG00000007622	-	97	78.638	ENSCCAG00000034025	-	92	78.793	Cebus_capucinus
ENSSSCG00000007622	-	98	78.387	ENSCATG00000040859	-	92	78.793	Cercocebus_atys
ENSSSCG00000007622	-	98	80.769	ENSCLAG00000006354	-	92	80.184	Chinchilla_lanigera
ENSSSCG00000007622	-	90	77.025	ENSCSAG00000017794	-	88	77.441	Chlorocebus_sabaeus
ENSSSCG00000007622	-	93	59.414	ENSCPBG00000020866	-	83	60.806	Chrysemys_picta_bellii
ENSSSCG00000007622	-	87	30.808	ENSCING00000007717	-	93	31.373	Ciona_intestinalis
ENSSSCG00000007622	-	98	77.557	ENSCANG00000023441	-	92	77.950	Colobus_angolensis_palliatus
ENSSSCG00000007622	-	99	75.303	ENSCGRG00001023686	Ptcd1	92	75.846	Cricetulus_griseus_chok1gshd
ENSSSCG00000007622	-	99	75.000	ENSCGRG00000015031	Ptcd1	94	75.000	Cricetulus_griseus_crigri
ENSSSCG00000007622	-	92	47.512	ENSCSEG00000002378	ptcd1	84	47.512	Cynoglossus_semilaevis
ENSSSCG00000007622	-	92	46.984	ENSCVAG00000003621	ptcd1	90	46.984	Cyprinodon_variegatus
ENSSSCG00000007622	-	90	47.974	ENSCVAG00000015826	ptcd1	83	47.974	Cyprinodon_variegatus
ENSSSCG00000007622	-	92	49.919	ENSDARG00000076176	ptcd1	87	50.163	Danio_rerio
ENSSSCG00000007622	-	99	78.144	ENSDNOG00000009957	-	91	79.784	Dasypus_novemcinctus
ENSSSCG00000007622	-	97	77.090	ENSDORG00000000740	Ptcd1	92	78.076	Dipodomys_ordii
ENSSSCG00000007622	-	96	39.913	ENSEBUG00000014515	ptcd1	97	42.683	Eptatretus_burgeri
ENSSSCG00000007622	-	99	85.952	ENSEASG00005002480	-	92	86.022	Equus_asinus_asinus
ENSSSCG00000007622	-	99	85.952	ENSECAG00000016617	-	92	86.022	Equus_caballus
ENSSSCG00000007622	-	89	47.581	ENSELUG00000016517	ptcd1	82	47.573	Esox_lucius
ENSSSCG00000007622	-	99	84.195	ENSFCAG00000015069	-	92	84.332	Felis_catus
ENSSSCG00000007622	-	99	57.267	ENSFALG00000013803	-	87	60.506	Ficedula_albicollis
ENSSSCG00000007622	-	99	78.582	ENSFDAG00000006393	-	92	79.263	Fukomys_damarensis
ENSSSCG00000007622	-	79	48.807	ENSFHEG00000012491	ptcd1	88	48.807	Fundulus_heteroclitus
ENSSSCG00000007622	-	87	48.714	ENSGMOG00000007639	ptcd1	91	48.714	Gadus_morhua
ENSSSCG00000007622	-	91	59.330	ENSGALG00000004711	-	86	59.490	Gallus_gallus
ENSSSCG00000007622	-	89	49.581	ENSGAFG00000013175	ptcd1	82	49.663	Gambusia_affinis
ENSSSCG00000007622	-	90	49.420	ENSGACG00000016607	ptcd1	91	49.256	Gasterosteus_aculeatus
ENSSSCG00000007622	-	87	58.209	ENSGAGG00000021832	-	84	59.895	Gopherus_agassizii
ENSSSCG00000007622	-	99	77.190	ENSGGOG00000015123	-	92	77.727	Gorilla_gorilla
ENSSSCG00000007622	-	88	49.915	ENSHBUG00000018275	ptcd1	86	47.393	Haplochromis_burtoni
ENSSSCG00000007622	-	99	78.614	ENSHGLG00000017621	-	92	79.538	Heterocephalus_glaber_female
ENSSSCG00000007622	-	99	78.614	ENSHGLG00100007218	-	92	79.538	Heterocephalus_glaber_male
ENSSSCG00000007622	-	88	48.041	ENSHCOG00000010784	ptcd1	82	48.889	Hippocampus_comes
ENSSSCG00000007622	-	99	78.701	ENSSTOG00000001682	-	91	79.690	Ictidomys_tridecemlineatus
ENSSSCG00000007622	-	98	74.808	ENSJJAG00000000319	Ptcd1	93	74.808	Jaculus_jaculus
ENSSSCG00000007622	-	88	48.253	ENSKMAG00000008708	ptcd1	80	48.167	Kryptolebias_marmoratus
ENSSSCG00000007622	-	94	47.319	ENSLBEG00000008061	ptcd1	82	48.392	Labrus_bergylta
ENSSSCG00000007622	-	98	54.505	ENSLACG00000011172	ptcd1	85	57.536	Latimeria_chalumnae
ENSSSCG00000007622	-	96	52.782	ENSLOCG00000004833	ptcd1	97	53.907	Lepisosteus_oculatus
ENSSSCG00000007622	-	99	75.301	ENSLAFG00000002588	-	93	75.301	Loxodonta_africana
ENSSSCG00000007622	-	98	78.387	ENSMFAG00000041324	-	92	78.793	Macaca_fascicularis
ENSSSCG00000007622	-	98	78.234	ENSMMUG00000030408	-	92	78.638	Macaca_mulatta
ENSSSCG00000007622	-	98	78.387	ENSMNEG00000043786	-	92	78.793	Macaca_nemestrina
ENSSSCG00000007622	-	98	57.839	ENSMLEG00000031179	-	90	62.074	Mandrillus_leucophaeus
ENSSSCG00000007622	-	90	49.917	ENSMAMG00000007623	ptcd1	80	49.916	Mastacembelus_armatus
ENSSSCG00000007622	-	88	49.492	ENSMZEG00005012722	ptcd1	86	47.218	Maylandia_zebra
ENSSSCG00000007622	-	97	57.903	ENSMGAG00000004211	-	83	59.335	Meleagris_gallopavo
ENSSSCG00000007622	-	98	81.193	ENSMICG00000017428	-	91	81.366	Microcebus_murinus
ENSSSCG00000007622	-	88	48.822	ENSMMOG00000020243	ptcd1	88	48.810	Mola_mola
ENSSSCG00000007622	-	96	63.843	ENSMODG00000001350	-	89	63.030	Monodelphis_domestica
ENSSSCG00000007622	-	89	49.425	ENSMALG00000018442	ptcd1	81	49.425	Monopterus_albus
ENSSSCG00000007622	-	98	76.769	MGP_CAROLIEiJ_G0028011	Ptcd1	92	77.812	Mus_caroli
ENSSSCG00000007622	-	98	76.000	ENSMUSG00000029624	Ptcd1	92	77.031	Mus_musculus
ENSSSCG00000007622	-	99	76.631	MGP_PahariEiJ_G0024580	Ptcd1	92	77.504	Mus_pahari
ENSSSCG00000007622	-	98	76.615	MGP_SPRETEiJ_G0029012	Ptcd1	92	77.656	Mus_spretus
ENSSSCG00000007622	-	98	83.079	ENSMPUG00000016518	-	92	83.103	Mustela_putorius_furo
ENSSSCG00000007622	-	99	84.743	ENSMLUG00000010994	-	86	84.946	Myotis_lucifugus
ENSSSCG00000007622	-	91	49.268	ENSNBRG00000010079	ptcd1	86	48.856	Neolamprologus_brichardi
ENSSSCG00000007622	-	85	78.445	ENSNLEG00000011060	-	94	78.445	Nomascus_leucogenys
ENSSSCG00000007622	-	96	62.963	ENSMEUG00000006930	-	90	63.150	Notamacropus_eugenii
ENSSSCG00000007622	-	86	77.209	ENSOPRG00000013647	-	82	77.209	Ochotona_princeps
ENSSSCG00000007622	-	88	49.831	ENSONIG00000003168	ptcd1	95	49.492	Oreochromis_niloticus
ENSSSCG00000007622	-	86	57.268	ENSOANG00000007728	-	73	57.989	Ornithorhynchus_anatinus
ENSSSCG00000007622	-	99	79.331	ENSOCUG00000010584	-	90	79.385	Oryctolagus_cuniculus
ENSSSCG00000007622	-	93	48.963	ENSORLG00000009275	ptcd1	88	48.963	Oryzias_latipes
ENSSSCG00000007622	-	93	48.567	ENSORLG00020000988	ptcd1	88	48.567	Oryzias_latipes_hni
ENSSSCG00000007622	-	93	48.166	ENSORLG00015010557	ptcd1	88	48.243	Oryzias_latipes_hsok
ENSSSCG00000007622	-	90	48.604	ENSOMEG00000020627	ptcd1	86	48.760	Oryzias_melastigma
ENSSSCG00000007622	-	98	77.405	ENSOGAG00000010877	-	92	78.072	Otolemur_garnettii
ENSSSCG00000007622	-	99	77.376	ENSOARG00000018676	-	93	77.301	Ovis_aries
ENSSSCG00000007622	-	99	76.807	ENSPPAG00000036024	-	93	77.335	Pan_paniscus
ENSSSCG00000007622	-	99	84.347	ENSPPRG00000003478	-	93	84.639	Panthera_pardus
ENSSSCG00000007622	-	98	77.204	ENSPTRG00000019452	-	93	77.335	Pan_troglodytes
ENSSSCG00000007622	-	98	78.387	ENSPANG00000016730	-	92	78.793	Papio_anubis
ENSSSCG00000007622	-	95	51.170	ENSPKIG00000014215	ptcd1	87	53.191	Paramormyrops_kingsleyae
ENSSSCG00000007622	-	89	58.872	ENSPSIG00000011184	-	100	59.500	Pelodiscus_sinensis
ENSSSCG00000007622	-	77	43.977	ENSPMAG00000009667	ptcd1	100	43.977	Petromyzon_marinus
ENSSSCG00000007622	-	93	64.050	ENSPCIG00000024778	-	89	62.689	Phascolarctos_cinereus
ENSSSCG00000007622	-	89	48.495	ENSPFOG00000004458	ptcd1	82	48.571	Poecilia_formosa
ENSSSCG00000007622	-	89	48.829	ENSPLAG00000011051	ptcd1	82	48.908	Poecilia_latipinna
ENSSSCG00000007622	-	89	48.328	ENSPMEG00000020547	ptcd1	82	48.403	Poecilia_mexicana
ENSSSCG00000007622	-	88	49.577	ENSPREG00000000059	ptcd1	82	49.410	Poecilia_reticulata
ENSSSCG00000007622	-	99	77.795	ENSPPYG00000017377	-	98	78.187	Pongo_abelii
ENSSSCG00000007622	-	86	78.873	ENSPCAG00000001852	-	89	78.873	Procavia_capensis
ENSSSCG00000007622	-	98	82.137	ENSPCOG00000018596	-	92	82.226	Propithecus_coquereli
ENSSSCG00000007622	-	65	81.212	ENSPVAG00000007529	-	64	80.878	Pteropus_vampyrus
ENSSSCG00000007622	-	88	49.577	ENSPNYG00000019993	ptcd1	88	46.584	Pundamilia_nyererei
ENSSSCG00000007622	-	93	51.669	ENSPNAG00000014931	ptcd1	91	52.139	Pygocentrus_nattereri
ENSSSCG00000007622	-	97	77.019	ENSRNOG00000000987	Ptcd1	91	78.344	Rattus_norvegicus
ENSSSCG00000007622	-	98	77.710	ENSRBIG00000043393	-	92	78.106	Rhinopithecus_bieti
ENSSSCG00000007622	-	98	77.405	ENSRROG00000036420	-	92	77.795	Rhinopithecus_roxellana
ENSSSCG00000007622	-	99	78.765	ENSSBOG00000024114	-	93	79.173	Saimiri_boliviensis_boliviensis
ENSSSCG00000007622	-	98	60.935	ENSSHAG00000011376	-	97	61.610	Sarcophilus_harrisii
ENSSSCG00000007622	-	95	52.000	ENSSFOG00015007909	ptcd1	86	52.000	Scleropages_formosus
ENSSSCG00000007622	-	91	46.667	ENSSMAG00000000218	ptcd1	94	47.463	Scophthalmus_maximus
ENSSSCG00000007622	-	98	46.224	ENSSDUG00000015671	ptcd1	86	47.642	Seriola_dumerili
ENSSSCG00000007622	-	91	48.136	ENSSLDG00000014261	ptcd1	85	48.270	Seriola_lalandi_dorsalis
ENSSSCG00000007622	-	96	55.371	ENSSPUG00000003540	-	83	57.955	Sphenodon_punctatus
ENSSSCG00000007622	-	93	48.970	ENSSPAG00000011049	ptcd1	84	48.970	Stegastes_partitus
ENSSSCG00000007622	-	91	60.778	ENSTGUG00000007563	-	98	61.375	Taeniopygia_guttata
ENSSSCG00000007622	-	90	48.000	ENSTRUG00000013471	ptcd1	81	48.000	Takifugu_rubripes
ENSSSCG00000007622	-	88	48.649	ENSTNIG00000008271	ptcd1	83	48.810	Tetraodon_nigroviridis
ENSSSCG00000007622	-	99	79.248	ENSTBEG00000011021	-	93	80.184	Tupaia_belangeri
ENSSSCG00000007622	-	99	84.115	ENSTTRG00000003006	-	92	84.568	Tursiops_truncatus
ENSSSCG00000007622	-	99	83.739	ENSUAMG00000008049	-	92	83.871	Ursus_americanus
ENSSSCG00000007622	-	99	82.406	ENSVVUG00000008836	-	93	83.257	Vulpes_vulpes
ENSSSCG00000007622	-	95	51.174	ENSXETG00000009891	ptcd1	87	51.870	Xenopus_tropicalis
ENSSSCG00000007622	-	89	49.239	ENSXMAG00000015540	ptcd1	82	49.320	Xiphophorus_maculatus