EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000007855 (Gene tree)
Gene ID: 100512042
Gene Symbol: REXO5
Alias: NEF-sp
Full Name: RNA exonuclease 5
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 61459 bases
Position: chr3:25177556-25239014
Accession: 100512042
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000044859	RRM_1	PF00076.22	7.6e-13	1	1
ENSSSCP00000037615	RRM_1	PF00076.22	8.3e-13	1	1
ENSSSCP00000008384	RRM_1	PF00076.22	8.7e-13	1	1
ENSSSCP00000044859	RNase_T	PF00929.24	2.2e-08	1	1
ENSSSCP00000037615	RNase_T	PF00929.24	2.4e-08	1	1
ENSSSCP00000008384	RNase_T	PF00929.24	2.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000008605	REXO5-202	2864	XM_021086505	ENSSSCP00000008384	784 (aa)	XP_020942164	F1RPB4
ENSSSCT00000065117	REXO5-201	3102	XM_021086509	ENSSSCP00000044859	752 (aa)	XP_020942168	A0A287ALT9
ENSSSCT00000061328	REXO5-203	5013	XM_021086504	ENSSSCP00000037615	776 (aa)	XP_020942163	A0A287A111

Gene Model

Click here to download ENSSSCG00000007855's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000007855's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000007855	REXO5	99	86.248	ENSG00000005189	REXO5	100	93.706	Homo_sapiens
ENSSSCG00000007855	REXO5	97	34.262	ENSAPOG00000008514	REXO5	97	34.262	Acanthochromis_polyacanthus
ENSSSCG00000007855	REXO5	99	89.853	ENSAMEG00000006178	REXO5	99	89.806	Ailuropoda_melanoleuca
ENSSSCG00000007855	REXO5	50	42.969	ENSAOCG00000003481	-	77	41.304	Amphiprion_ocellaris
ENSSSCG00000007855	REXO5	97	35.346	ENSAPEG00000010627	REXO5	98	35.346	Amphiprion_percula
ENSSSCG00000007855	REXO5	81	39.040	ENSATEG00000004682	REXO5	97	40.237	Anabas_testudineus
ENSSSCG00000007855	REXO5	93	49.402	ENSAPLG00000015740	REXO5	99	49.402	Anas_platyrhynchos
ENSSSCG00000007855	REXO5	94	46.154	ENSACAG00000009744	REXO5	94	45.968	Anolis_carolinensis
ENSSSCG00000007855	REXO5	99	82.754	ENSANAG00000034379	REXO5	99	82.581	Aotus_nancymaae
ENSSSCG00000007855	REXO5	76	35.747	ENSACLG00000004778	REXO5	99	35.747	Astatotilapia_calliptera
ENSSSCG00000007855	REXO5	100	87.242	ENSBTAG00000006449	REXO5	98	87.242	Bos_taurus
ENSSSCG00000007855	REXO5	99	82.968	ENSCJAG00000009363	REXO5	99	82.968	Callithrix_jacchus
ENSSSCG00000007855	REXO5	99	89.032	ENSCAFG00000017924	REXO5	100	89.032	Canis_familiaris
ENSSSCG00000007855	REXO5	100	87.113	ENSCAFG00020021846	REXO5	100	87.113	Canis_lupus_dingo
ENSSSCG00000007855	REXO5	100	89.820	ENSCHIG00000022443	REXO5	100	89.820	Capra_hircus
ENSSSCG00000007855	REXO5	100	75.321	ENSCPOG00000008940	REXO5	94	77.091	Cavia_porcellus
ENSSSCG00000007855	REXO5	99	85.180	ENSCCAG00000034936	REXO5	99	85.032	Cebus_capucinus
ENSSSCG00000007855	REXO5	99	86.382	ENSCATG00000044063	REXO5	100	86.047	Cercocebus_atys
ENSSSCG00000007855	REXO5	100	77.635	ENSCLAG00000008033	REXO5	95	77.635	Chinchilla_lanigera
ENSSSCG00000007855	REXO5	99	86.782	ENSCSAG00000007562	REXO5	100	86.434	Chlorocebus_sabaeus
ENSSSCG00000007855	REXO5	77	92.157	ENSCHOG00000009146	-	80	92.157	Choloepus_hoffmanni
ENSSSCG00000007855	REXO5	98	48.721	ENSCPBG00000019062	REXO5	98	48.721	Chrysemys_picta_bellii
ENSSSCG00000007855	REXO5	99	86.248	ENSCANG00000035776	REXO5	100	85.917	Colobus_angolensis_palliatus
ENSSSCG00000007855	REXO5	99	72.267	ENSCGRG00001016179	-	99	71.964	Cricetulus_griseus_chok1gshd
ENSSSCG00000007855	REXO5	99	72.363	ENSCGRG00000010868	-	99	71.373	Cricetulus_griseus_crigri
ENSSSCG00000007855	REXO5	51	36.973	ENSCVAG00000014887	-	72	36.973	Cyprinodon_variegatus
ENSSSCG00000007855	REXO5	94	87.088	ENSEASG00005007266	REXO5	99	88.955	Equus_asinus_asinus
ENSSSCG00000007855	REXO5	99	87.450	ENSECAG00000018769	REXO5	89	87.226	Equus_caballus
ENSSSCG00000007855	REXO5	84	74.854	ENSEEUG00000003572	REXO5	90	74.854	Erinaceus_europaeus
ENSSSCG00000007855	REXO5	99	88.117	ENSFCAG00000015160	REXO5	99	88.000	Felis_catus
ENSSSCG00000007855	REXO5	94	47.152	ENSFALG00000014026	REXO5	99	47.152	Ficedula_albicollis
ENSSSCG00000007855	REXO5	98	31.841	ENSFHEG00000013388	REXO5	99	31.938	Fundulus_heteroclitus
ENSSSCG00000007855	REXO5	96	47.165	ENSGALG00000002239	REXO5	98	47.165	Gallus_gallus
ENSSSCG00000007855	REXO5	99	33.412	ENSGAFG00000011045	REXO5	98	33.412	Gambusia_affinis
ENSSSCG00000007855	REXO5	52	42.569	ENSGACG00000019507	-	85	42.569	Gasterosteus_aculeatus
ENSSSCG00000007855	REXO5	98	48.241	ENSGAGG00000008242	REXO5	98	48.241	Gopherus_agassizii
ENSSSCG00000007855	REXO5	99	86.382	ENSGGOG00000004539	REXO5	99	86.194	Gorilla_gorilla
ENSSSCG00000007855	REXO5	98	33.859	ENSHBUG00000017976	REXO5	99	33.859	Haplochromis_burtoni
ENSSSCG00000007855	REXO5	86	78.571	ENSHGLG00000012652	REXO5	100	78.390	Heterocephalus_glaber_female
ENSSSCG00000007855	REXO5	100	75.644	ENSHGLG00100013255	REXO5	99	77.384	Heterocephalus_glaber_male
ENSSSCG00000007855	REXO5	64	38.900	ENSHCOG00000008648	REXO5	83	39.796	Hippocampus_comes
ENSSSCG00000007855	REXO5	89	74.401	ENSSTOG00000007071	REXO5	97	74.401	Ictidomys_tridecemlineatus
ENSSSCG00000007855	REXO5	94	74.760	ENSJJAG00000023821	-	95	74.760	Jaculus_jaculus
ENSSSCG00000007855	REXO5	95	34.328	ENSKMAG00000009488	REXO5	95	33.920	Kryptolebias_marmoratus
ENSSSCG00000007855	REXO5	92	35.419	ENSLBEG00000009276	REXO5	92	35.864	Labrus_bergylta
ENSSSCG00000007855	REXO5	77	46.325	ENSLACG00000001758	REXO5	99	46.346	Latimeria_chalumnae
ENSSSCG00000007855	REXO5	98	85.000	ENSLAFG00000006157	REXO5	99	85.000	Loxodonta_africana
ENSSSCG00000007855	REXO5	99	86.382	ENSMFAG00000036613	REXO5	100	86.047	Macaca_fascicularis
ENSSSCG00000007855	REXO5	99	86.248	ENSMMUG00000016748	REXO5	100	85.917	Macaca_mulatta
ENSSSCG00000007855	REXO5	99	86.382	ENSMNEG00000045028	REXO5	100	86.047	Macaca_nemestrina
ENSSSCG00000007855	REXO5	99	86.382	ENSMLEG00000029851	REXO5	100	86.047	Mandrillus_leucophaeus
ENSSSCG00000007855	REXO5	99	34.110	ENSMAMG00000006915	REXO5	94	34.014	Mastacembelus_armatus
ENSSSCG00000007855	REXO5	98	33.495	ENSMZEG00005013657	REXO5	99	33.495	Maylandia_zebra
ENSSSCG00000007855	REXO5	94	47.769	ENSMGAG00000010369	REXO5	99	47.769	Meleagris_gallopavo
ENSSSCG00000007855	REXO5	99	89.364	ENSMICG00000014886	REXO5	99	89.364	Microcebus_murinus
ENSSSCG00000007855	REXO5	60	73.942	ENSMOCG00000010062	-	98	73.942	Microtus_ochrogaster
ENSSSCG00000007855	REXO5	98	55.859	ENSMODG00000007059	REXO5	94	55.556	Monodelphis_domestica
ENSSSCG00000007855	REXO5	99	67.957	MGP_CAROLIEiJ_G0030385	-	99	67.571	Mus_caroli
ENSSSCG00000007855	REXO5	99	67.957	ENSMUSG00000030924	Rexo5	98	70.156	Mus_musculus
ENSSSCG00000007855	REXO5	99	67.957	MGP_SPRETEiJ_G0031499	-	99	67.700	Mus_spretus
ENSSSCG00000007855	REXO5	99	89.853	ENSMPUG00000013643	REXO5	99	89.806	Mustela_putorius_furo
ENSSSCG00000007855	REXO5	94	73.562	ENSNGAG00000002025	-	98	75.724	Nannospalax_galili
ENSSSCG00000007855	REXO5	61	41.809	ENSNBRG00000006877	REXO5	67	41.809	Neolamprologus_brichardi
ENSSSCG00000007855	REXO5	99	86.115	ENSNLEG00000012334	REXO5	99	85.935	Nomascus_leucogenys
ENSSSCG00000007855	REXO5	93	54.993	ENSMEUG00000015298	REXO5	99	54.993	Notamacropus_eugenii
ENSSSCG00000007855	REXO5	90	69.759	ENSOPRG00000011398	REXO5	90	69.759	Ochotona_princeps
ENSSSCG00000007855	REXO5	90	35.403	ENSONIG00000000148	REXO5	97	40.106	Oreochromis_niloticus
ENSSSCG00000007855	REXO5	93	55.121	ENSOANG00000014291	REXO5	100	55.121	Ornithorhynchus_anatinus
ENSSSCG00000007855	REXO5	100	82.603	ENSOCUG00000009913	REXO5	99	82.603	Oryctolagus_cuniculus
ENSSSCG00000007855	REXO5	91	35.239	ENSORLG00000009738	REXO5	93	35.239	Oryzias_latipes
ENSSSCG00000007855	REXO5	91	35.514	ENSORLG00020010270	REXO5	93	35.514	Oryzias_latipes_hni
ENSSSCG00000007855	REXO5	91	35.193	ENSORLG00015009678	REXO5	93	35.193	Oryzias_latipes_hsok
ENSSSCG00000007855	REXO5	96	34.505	ENSOMEG00000019491	REXO5	97	34.395	Oryzias_melastigma
ENSSSCG00000007855	REXO5	99	85.848	ENSOGAG00000011564	REXO5	99	85.806	Otolemur_garnettii
ENSSSCG00000007855	REXO5	100	89.948	ENSOARG00000013401	REXO5	100	89.467	Ovis_aries
ENSSSCG00000007855	REXO5	99	85.848	ENSPPAG00000035005	REXO5	99	85.677	Pan_paniscus
ENSSSCG00000007855	REXO5	99	85.180	ENSPPRG00000022345	REXO5	99	85.161	Panthera_pardus
ENSSSCG00000007855	REXO5	99	88.919	ENSPTIG00000012096	REXO5	99	88.774	Panthera_tigris_altaica
ENSSSCG00000007855	REXO5	99	85.848	ENSPTRG00000007851	REXO5	99	85.677	Pan_troglodytes
ENSSSCG00000007855	REXO5	99	86.382	ENSPANG00000006898	REXO5	99	86.047	Papio_anubis
ENSSSCG00000007855	REXO5	91	39.082	ENSPKIG00000014406	REXO5	94	39.082	Paramormyrops_kingsleyae
ENSSSCG00000007855	REXO5	95	47.715	ENSPSIG00000012172	REXO5	95	48.425	Pelodiscus_sinensis
ENSSSCG00000007855	REXO5	99	54.765	ENSPCIG00000029238	-	99	55.472	Phascolarctos_cinereus
ENSSSCG00000007855	REXO5	97	32.051	ENSPFOG00000012767	REXO5	98	32.464	Poecilia_formosa
ENSSSCG00000007855	REXO5	97	32.051	ENSPLAG00000006408	REXO5	98	32.464	Poecilia_latipinna
ENSSSCG00000007855	REXO5	97	31.893	ENSPMEG00000007726	REXO5	98	32.339	Poecilia_mexicana
ENSSSCG00000007855	REXO5	81	36.867	ENSPREG00000000146	REXO5	75	36.867	Poecilia_reticulata
ENSSSCG00000007855	REXO5	99	85.981	ENSPPYG00000007163	REXO5	99	85.806	Pongo_abelii
ENSSSCG00000007855	REXO5	93	79.915	ENSPCAG00000006265	REXO5	100	79.915	Procavia_capensis
ENSSSCG00000007855	REXO5	99	86.641	ENSPCOG00000018775	REXO5	99	86.641	Propithecus_coquereli
ENSSSCG00000007855	REXO5	94	86.538	ENSPVAG00000003293	REXO5	99	86.538	Pteropus_vampyrus
ENSSSCG00000007855	REXO5	81	36.306	ENSPNYG00000006922	REXO5	84	36.306	Pundamilia_nyererei
ENSSSCG00000007855	REXO5	90	36.402	ENSPNAG00000018866	-	91	36.288	Pygocentrus_nattereri
ENSSSCG00000007855	REXO5	99	68.758	ENSRNOG00000014513	Rexo5	99	68.482	Rattus_norvegicus
ENSSSCG00000007855	REXO5	99	86.115	ENSRBIG00000035163	REXO5	88	86.104	Rhinopithecus_bieti
ENSSSCG00000007855	REXO5	99	85.848	ENSRROG00000034741	REXO5	100	85.401	Rhinopithecus_roxellana
ENSSSCG00000007855	REXO5	99	84.246	ENSSBOG00000029650	REXO5	99	84.873	Saimiri_boliviensis_boliviensis
ENSSSCG00000007855	REXO5	98	57.560	ENSSHAG00000005042	REXO5	98	57.513	Sarcophilus_harrisii
ENSSSCG00000007855	REXO5	92	39.858	ENSSFOG00015007581	REXO5	93	39.806	Scleropages_formosus
ENSSSCG00000007855	REXO5	91	35.340	ENSSMAG00000000709	REXO5	99	34.491	Scophthalmus_maximus
ENSSSCG00000007855	REXO5	91	35.294	ENSSDUG00000014528	REXO5	91	35.425	Seriola_dumerili
ENSSSCG00000007855	REXO5	91	34.225	ENSSLDG00000007641	REXO5	90	34.681	Seriola_lalandi_dorsalis
ENSSSCG00000007855	REXO5	94	48.193	ENSTGUG00000009219	REXO5	99	48.193	Taeniopygia_guttata
ENSSSCG00000007855	REXO5	98	34.670	ENSTRUG00000015295	-	97	34.670	Takifugu_rubripes
ENSSSCG00000007855	REXO5	87	88.119	ENSTBEG00000008797	REXO5	90	86.719	Tupaia_belangeri
ENSSSCG00000007855	REXO5	100	88.015	ENSTTRG00000016439	REXO5	100	88.015	Tursiops_truncatus
ENSSSCG00000007855	REXO5	87	85.119	ENSUAMG00000017756	REXO5	99	85.119	Ursus_americanus
ENSSSCG00000007855	REXO5	50	89.691	ENSUMAG00000010466	-	93	89.691	Ursus_maritimus
ENSSSCG00000007855	REXO5	99	85.419	ENSVPAG00000003459	REXO5	99	85.419	Vicugna_pacos
ENSSSCG00000007855	REXO5	100	88.918	ENSVVUG00000023257	REXO5	100	88.918	Vulpes_vulpes
ENSSSCG00000007855	REXO5	94	47.131	ENSXETG00000016735	rexo5	99	47.131	Xenopus_tropicalis
ENSSSCG00000007855	REXO5	65	40.000	ENSXCOG00000015997	REXO5	59	40.000	Xiphophorus_couchianus
ENSSSCG00000007855	REXO5	97	33.014	ENSXMAG00000014770	REXO5	74	37.987	Xiphophorus_maculatus