EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000007878 (Gene tree)
Gene ID: 100515887
Gene Symbol: PARN
Alias: DAN
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 185698 bases
Position: chr3:28616808-28802505
Accession: 100515887
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000050340	R3H	PF01424.22	4.9e-05	1	1
ENSSSCP00000008411	R3H	PF01424.22	5e-05	1	1
ENSSSCP00000043603	R3H	PF01424.22	5.2e-05	1	1
ENSSSCP00000050340	RNA_bind	PF08675.11	3.5e-33	1	1
ENSSSCP00000057653	RNA_bind	PF08675.11	3.6e-33	1	1
ENSSSCP00000008411	RNA_bind	PF08675.11	3.6e-33	1	1
ENSSSCP00000043603	RNA_bind	PF08675.11	3.8e-33	1	1
ENSSSCP00000057653	CAF1	PF04857.20	1.1e-89	1	1
ENSSSCP00000043603	CAF1	PF04857.20	1.6e-89	1	1
ENSSSCP00000050340	CAF1	PF04857.20	3.2e-72	1	1
ENSSSCP00000008411	CAF1	PF04857.20	1.6e-67	1	2
ENSSSCP00000008411	CAF1	PF04857.20	1.6e-67	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000037222	PARN-202	3050	-	ENSSSCP00000050340	686 (aa)	-	A0A287B270
ENSSSCT00000053722	PARN-201	3255	XM_021086561	ENSSSCP00000043603	715 (aa)	XP_020942220	A0A287AI76
ENSSSCT00000008633	PARN-203	3056	XM_021086563	ENSSSCP00000008411	689 (aa)	XP_020942222	F1RLR7
ENSSSCT00000051626	PARN-204	2082	-	ENSSSCP00000057653	693 (aa)	-	A0A287BMK2

Gene Model

Click here to download ENSSSCG00000007878's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000007878's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000007878	PARN	89	92.801	ENSG00000140694	PARN	100	98.305	Homo_sapiens
ENSSSCG00000007878	PARN	89	93.427	ENSAMEG00000011208	PARN	100	93.427	Ailuropoda_melanoleuca
ENSSSCG00000007878	PARN	74	75.933	ENSACIG00000000619	parn	96	68.130	Amphilophus_citrinellus
ENSSSCG00000007878	PARN	82	73.083	ENSAOCG00000003465	parn	100	65.702	Amphiprion_ocellaris
ENSSSCG00000007878	PARN	68	76.025	ENSAPEG00000010661	parn	93	76.025	Amphiprion_percula
ENSSSCG00000007878	PARN	84	71.082	ENSATEG00000004661	parn	88	71.082	Anabas_testudineus
ENSSSCG00000007878	PARN	89	82.780	ENSAPLG00000013914	PARN	99	82.780	Anas_platyrhynchos
ENSSSCG00000007878	PARN	89	77.692	ENSACAG00000004973	PARN	100	77.846	Anolis_carolinensis
ENSSSCG00000007878	PARN	89	92.175	ENSANAG00000031516	PARN	100	98.305	Aotus_nancymaae
ENSSSCG00000007878	PARN	80	74.394	ENSACLG00000004742	parn	83	74.394	Astatotilapia_calliptera
ENSSSCG00000007878	PARN	89	67.683	ENSAMXG00000012390	parn	92	74.286	Astyanax_mexicanus
ENSSSCG00000007878	PARN	89	91.536	ENSBTAG00000018097	PARN	100	93.761	Bos_taurus
ENSSSCG00000007878	PARN	89	92.332	ENSCJAG00000015866	PARN	100	98.305	Callithrix_jacchus
ENSSSCG00000007878	PARN	89	93.574	ENSCAFG00000018795	PARN	100	93.574	Canis_familiaris
ENSSSCG00000007878	PARN	89	93.574	ENSCAFG00020024126	PARN	100	93.574	Canis_lupus_dingo
ENSSSCG00000007878	PARN	89	94.671	ENSCHIG00000018143	PARN	100	94.671	Capra_hircus
ENSSSCG00000007878	PARN	64	65.275	ENSCAPG00000007984	PARN	78	65.275	Cavia_aperea
ENSSSCG00000007878	PARN	89	88.715	ENSCPOG00000002263	PARN	100	88.715	Cavia_porcellus
ENSSSCG00000007878	PARN	89	92.488	ENSCCAG00000030367	PARN	100	98.305	Cebus_capucinus
ENSSSCG00000007878	PARN	89	82.473	ENSCATG00000041368	PARN	100	98.305	Cercocebus_atys
ENSSSCG00000007878	PARN	89	89.185	ENSCLAG00000015406	PARN	99	89.185	Chinchilla_lanigera
ENSSSCG00000007878	PARN	89	92.801	ENSCSAG00000008142	PARN	100	92.801	Chlorocebus_sabaeus
ENSSSCG00000007878	PARN	88	75.119	ENSCHOG00000007014	PARN	100	75.119	Choloepus_hoffmanni
ENSSSCG00000007878	PARN	78	84.752	ENSCPBG00000006609	PARN	97	84.815	Chrysemys_picta_bellii
ENSSSCG00000007878	PARN	72	44.278	ENSCING00000010142	-	99	44.278	Ciona_intestinalis
ENSSSCG00000007878	PARN	89	80.395	ENSCANG00000028849	-	100	98.305	Colobus_angolensis_palliatus
ENSSSCG00000007878	PARN	89	84.555	ENSCGRG00001012096	Parn	100	84.555	Cricetulus_griseus_chok1gshd
ENSSSCG00000007878	PARN	89	84.555	ENSCGRG00000004939	Parn	100	84.555	Cricetulus_griseus_crigri
ENSSSCG00000007878	PARN	89	63.808	ENSCSEG00000002064	parn	100	63.348	Cynoglossus_semilaevis
ENSSSCG00000007878	PARN	89	65.689	ENSCVAG00000014848	parn	100	65.836	Cyprinodon_variegatus
ENSSSCG00000007878	PARN	89	64.188	ENSDARG00000102634	parn	100	60.185	Danio_rerio
ENSSSCG00000007878	PARN	94	87.928	ENSDNOG00000000833	PARN	98	94.964	Dasypus_novemcinctus
ENSSSCG00000007878	PARN	69	93.916	ENSETEG00000014828	-	69	93.916	Echinops_telfairi
ENSSSCG00000007878	PARN	51	52.691	ENSEBUG00000007052	PARN	70	71.429	Eptatretus_burgeri
ENSSSCG00000007878	PARN	89	94.044	ENSEASG00005011400	PARN	100	94.044	Equus_asinus_asinus
ENSSSCG00000007878	PARN	89	93.887	ENSECAG00000017792	PARN	100	93.887	Equus_caballus
ENSSSCG00000007878	PARN	80	85.068	ENSEEUG00000010370	PARN	86	85.068	Erinaceus_europaeus
ENSSSCG00000007878	PARN	80	73.929	ENSELUG00000013139	parn	75	73.024	Esox_lucius
ENSSSCG00000007878	PARN	89	93.730	ENSFCAG00000044961	PARN	100	98.305	Felis_catus
ENSSSCG00000007878	PARN	51	31.053	ENSFALG00000012081	PNLDC1	70	31.053	Ficedula_albicollis
ENSSSCG00000007878	PARN	88	81.775	ENSFALG00000003911	PARN	98	81.775	Ficedula_albicollis
ENSSSCG00000007878	PARN	89	89.185	ENSFDAG00000009234	PARN	100	89.185	Fukomys_damarensis
ENSSSCG00000007878	PARN	82	66.110	ENSFHEG00000013738	parn	92	76.271	Fundulus_heteroclitus
ENSSSCG00000007878	PARN	74	76.306	ENSGMOG00000003231	parn	97	76.306	Gadus_morhua
ENSSSCG00000007878	PARN	89	81.279	ENSGALG00000003091	PARN	100	81.279	Gallus_gallus
ENSSSCG00000007878	PARN	80	73.196	ENSGAFG00000011061	parn	84	72.466	Gambusia_affinis
ENSSSCG00000007878	PARN	74	76.679	ENSGACG00000019501	parn	86	76.679	Gasterosteus_aculeatus
ENSSSCG00000007878	PARN	51	76.404	ENSGAGG00000023281	PARN	83	79.331	Gopherus_agassizii
ENSSSCG00000007878	PARN	87	93.065	ENSGGOG00000025224	PARN	99	98.305	Gorilla_gorilla
ENSSSCG00000007878	PARN	80	74.394	ENSHBUG00000017906	parn	90	76.536	Haplochromis_burtoni
ENSSSCG00000007878	PARN	89	88.401	ENSHGLG00000010886	PARN	100	88.401	Heterocephalus_glaber_female
ENSSSCG00000007878	PARN	89	88.401	ENSHGLG00100014659	PARN	100	88.401	Heterocephalus_glaber_male
ENSSSCG00000007878	PARN	73	72.779	ENSHCOG00000008683	parn	91	72.779	Hippocampus_comes
ENSSSCG00000007878	PARN	74	69.080	ENSIPUG00000012401	parn	79	69.080	Ictalurus_punctatus
ENSSSCG00000007878	PARN	89	90.596	ENSSTOG00000007519	PARN	100	90.596	Ictidomys_tridecemlineatus
ENSSSCG00000007878	PARN	89	87.774	ENSJJAG00000023049	Parn	100	87.774	Jaculus_jaculus
ENSSSCG00000007878	PARN	81	73.459	ENSKMAG00000009462	parn	83	73.459	Kryptolebias_marmoratus
ENSSSCG00000007878	PARN	80	72.931	ENSLBEG00000009167	parn	89	72.931	Labrus_bergylta
ENSSSCG00000007878	PARN	70	78.571	ENSLACG00000004207	PARN	100	76.887	Latimeria_chalumnae
ENSSSCG00000007878	PARN	82	75.000	ENSLOCG00000000715	parn	85	75.000	Lepisosteus_oculatus
ENSSSCG00000007878	PARN	89	91.850	ENSLAFG00000015036	PARN	100	91.850	Loxodonta_africana
ENSSSCG00000007878	PARN	89	87.500	ENSMFAG00000044852	PARN	100	98.305	Macaca_fascicularis
ENSSSCG00000007878	PARN	89	92.488	ENSMMUG00000018849	PARN	100	98.305	Macaca_mulatta
ENSSSCG00000007878	PARN	89	92.645	ENSMNEG00000045108	PARN	100	98.305	Macaca_nemestrina
ENSSSCG00000007878	PARN	89	92.488	ENSMLEG00000031743	PARN	100	98.305	Mandrillus_leucophaeus
ENSSSCG00000007878	PARN	81	72.852	ENSMAMG00000006939	parn	83	72.852	Mastacembelus_armatus
ENSSSCG00000007878	PARN	80	74.394	ENSMZEG00005013590	parn	98	72.213	Maylandia_zebra
ENSSSCG00000007878	PARN	85	81.506	ENSMGAG00000001004	PARN	95	81.506	Meleagris_gallopavo
ENSSSCG00000007878	PARN	89	78.582	ENSMAUG00000008025	Parn	100	78.582	Mesocricetus_auratus
ENSSSCG00000007878	PARN	89	93.103	ENSMICG00000016053	PARN	100	100.000	Microcebus_murinus
ENSSSCG00000007878	PARN	69	91.296	ENSMOCG00000022211	Parn	100	91.296	Microtus_ochrogaster
ENSSSCG00000007878	PARN	73	79.337	ENSMMOG00000011333	parn	87	79.337	Mola_mola
ENSSSCG00000007878	PARN	69	94.355	ENSMODG00000004915	PARN	99	94.355	Monodelphis_domestica
ENSSSCG00000007878	PARN	74	78.212	ENSMALG00000019426	parn	91	78.212	Monopterus_albus
ENSSSCG00000007878	PARN	89	85.737	MGP_CAROLIEiJ_G0020466	Parn	100	85.737	Mus_caroli
ENSSSCG00000007878	PARN	89	85.423	ENSMUSG00000022685	Parn	100	95.122	Mus_musculus
ENSSSCG00000007878	PARN	89	85.266	MGP_PahariEiJ_G0016172	Parn	100	85.156	Mus_pahari
ENSSSCG00000007878	PARN	89	85.580	MGP_SPRETEiJ_G0021361	Parn	100	85.580	Mus_spretus
ENSSSCG00000007878	PARN	89	94.357	ENSMPUG00000014464	PARN	100	94.357	Mustela_putorius_furo
ENSSSCG00000007878	PARN	69	94.737	ENSMLUG00000005414	PARN	100	94.737	Myotis_lucifugus
ENSSSCG00000007878	PARN	81	71.675	ENSNBRG00000006805	parn	98	71.675	Neolamprologus_brichardi
ENSSSCG00000007878	PARN	89	93.114	ENSNLEG00000010241	PARN	100	98.305	Nomascus_leucogenys
ENSSSCG00000007878	PARN	78	72.131	ENSMEUG00000008178	-	100	61.331	Notamacropus_eugenii
ENSSSCG00000007878	PARN	88	85.103	ENSOPRG00000012187	PARN	100	85.103	Ochotona_princeps
ENSSSCG00000007878	PARN	89	80.343	ENSODEG00000001617	PARN	100	80.343	Octodon_degus
ENSSSCG00000007878	PARN	80	74.567	ENSONIG00000000151	parn	100	69.018	Oreochromis_niloticus
ENSSSCG00000007878	PARN	55	82.368	ENSOANG00000020155	-	97	82.632	Ornithorhynchus_anatinus
ENSSSCG00000007878	PARN	89	90.236	ENSOCUG00000000322	PARN	100	90.236	Oryctolagus_cuniculus
ENSSSCG00000007878	PARN	81	73.116	ENSORLG00020010313	parn	85	73.116	Oryzias_latipes_hni
ENSSSCG00000007878	PARN	81	72.945	ENSORLG00015000300	parn	85	72.945	Oryzias_latipes_hsok
ENSSSCG00000007878	PARN	89	66.172	ENSOMEG00000019555	parn	100	66.172	Oryzias_melastigma
ENSSSCG00000007878	PARN	69	93.131	ENSOGAG00000014626	PARN	100	93.131	Otolemur_garnettii
ENSSSCG00000007878	PARN	69	97.773	ENSOARG00000007574	PARN	100	97.773	Ovis_aries
ENSSSCG00000007878	PARN	89	92.488	ENSPPAG00000031438	PARN	100	98.305	Pan_paniscus
ENSSSCG00000007878	PARN	89	93.730	ENSPPRG00000018583	PARN	100	98.305	Panthera_pardus
ENSSSCG00000007878	PARN	89	93.574	ENSPTIG00000012135	PARN	100	98.305	Panthera_tigris_altaica
ENSSSCG00000007878	PARN	89	92.488	ENSPTRG00000007792	PARN	100	98.305	Pan_troglodytes
ENSSSCG00000007878	PARN	89	89.515	ENSPANG00000020099	PARN	100	98.305	Papio_anubis
ENSSSCG00000007878	PARN	81	73.368	ENSPKIG00000022807	parn	90	70.209	Paramormyrops_kingsleyae
ENSSSCG00000007878	PARN	87	84.160	ENSPSIG00000014804	PARN	100	83.276	Pelodiscus_sinensis
ENSSSCG00000007878	PARN	77	72.563	ENSPMGG00000014431	parn	77	73.184	Periophthalmus_magnuspinnatus
ENSSSCG00000007878	PARN	89	83.229	ENSPEMG00000018439	Parn	100	83.229	Peromyscus_maniculatus_bairdii
ENSSSCG00000007878	PARN	72	67.961	ENSPMAG00000003956	parn	98	67.961	Petromyzon_marinus
ENSSSCG00000007878	PARN	59	86.761	ENSPCIG00000001259	PARN	91	93.220	Phascolarctos_cinereus
ENSSSCG00000007878	PARN	80	73.103	ENSPFOG00000012823	parn	83	73.103	Poecilia_formosa
ENSSSCG00000007878	PARN	80	73.276	ENSPLAG00000006395	parn	83	73.276	Poecilia_latipinna
ENSSSCG00000007878	PARN	80	73.276	ENSPMEG00000007711	parn	84	72.373	Poecilia_mexicana
ENSSSCG00000007878	PARN	80	72.931	ENSPREG00000000147	parn	84	72.034	Poecilia_reticulata
ENSSSCG00000007878	PARN	89	92.200	ENSPPYG00000007123	PARN	100	92.200	Pongo_abelii
ENSSSCG00000007878	PARN	85	81.818	ENSPCAG00000001741	PARN	100	81.818	Procavia_capensis
ENSSSCG00000007878	PARN	89	91.066	ENSPCOG00000019292	PARN	100	100.000	Propithecus_coquereli
ENSSSCG00000007878	PARN	88	90.016	ENSPVAG00000002547	PARN	100	90.016	Pteropus_vampyrus
ENSSSCG00000007878	PARN	88	69.592	ENSPNYG00000006835	parn	98	69.692	Pundamilia_nyererei
ENSSSCG00000007878	PARN	74	73.913	ENSPNAG00000018905	parn	84	73.913	Pygocentrus_nattereri
ENSSSCG00000007878	PARN	89	82.927	ENSRNOG00000002912	Parn	98	88.889	Rattus_norvegicus
ENSSSCG00000007878	PARN	89	91.080	ENSSBOG00000034726	PARN	100	98.305	Saimiri_boliviensis_boliviensis
ENSSSCG00000007878	PARN	58	93.780	ENSSHAG00000008493	PARN	94	93.780	Sarcophilus_harrisii
ENSSSCG00000007878	PARN	86	72.195	ENSSFOG00015014165	parn	96	71.812	Scleropages_formosus
ENSSSCG00000007878	PARN	80	71.355	ENSSMAG00000000685	parn	87	71.033	Scophthalmus_maximus
ENSSSCG00000007878	PARN	80	73.196	ENSSDUG00000014555	parn	83	73.196	Seriola_dumerili
ENSSSCG00000007878	PARN	81	81.002	ENSSARG00000014339	PARN	100	81.002	Sorex_araneus
ENSSSCG00000007878	PARN	89	84.013	ENSSPUG00000007719	PARN	100	84.013	Sphenodon_punctatus
ENSSSCG00000007878	PARN	89	64.613	ENSSPAG00000007095	parn	100	65.066	Stegastes_partitus
ENSSSCG00000007878	PARN	89	81.833	ENSTGUG00000004971	PARN	99	81.833	Taeniopygia_guttata
ENSSSCG00000007878	PARN	89	68.421	ENSTNIG00000008252	parn	100	68.576	Tetraodon_nigroviridis
ENSSSCG00000007878	PARN	81	77.720	ENSTBEG00000010407	PARN	100	77.720	Tupaia_belangeri
ENSSSCG00000007878	PARN	88	89.699	ENSTTRG00000002843	PARN	100	89.699	Tursiops_truncatus
ENSSSCG00000007878	PARN	63	82.222	ENSUAMG00000008283	PARN	94	80.275	Ursus_americanus
ENSSSCG00000007878	PARN	89	93.887	ENSUMAG00000004527	PARN	100	93.887	Ursus_maritimus
ENSSSCG00000007878	PARN	86	91.531	ENSVPAG00000008968	PARN	100	91.531	Vicugna_pacos
ENSSSCG00000007878	PARN	89	94.044	ENSVVUG00000019509	PARN	100	94.044	Vulpes_vulpes
ENSSSCG00000007878	PARN	89	74.688	ENSXETG00000010994	parn	100	83.080	Xenopus_tropicalis
ENSSSCG00000007878	PARN	80	69.191	ENSXCOG00000015990	parn	96	68.528	Xiphophorus_couchianus
ENSSSCG00000007878	PARN	82	72.297	ENSXMAG00000014783	parn	84	72.297	Xiphophorus_maculatus