EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000007917 (Gene tree)
Gene ID: 100522863
Gene Symbol: RBFOX1
Alias: A2BP1|FOX-1|HRNBP1
Full Name: RNA binding fox-1 homolog 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 390437 bases
Position: chr3:34935770-35326206
Accession: 100522863
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000044024	Fox-1_C	PF12414.8	2.5e-42	1	1
ENSSSCP00000036487	Fox-1_C	PF12414.8	2.7e-40	1	1
ENSSSCP00000008454	Fox-1_C	PF12414.8	5.9e-40	1	1
ENSSSCP00000059490	Fox-1_C	PF12414.8	4.3e-38	1	1
ENSSSCP00000008454	RRM_1	PF00076.22	4.2e-18	1	1
ENSSSCP00000036487	RRM_1	PF00076.22	4.8e-18	1	1
ENSSSCP00000059490	RRM_1	PF00076.22	5.3e-18	1	1
ENSSSCP00000044024	RRM_1	PF00076.22	5.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000008677	RBFOX1-203	1579	XM_021088066	ENSSSCP00000008454	354 (aa)	XP_020943725	F1RKX4
ENSSSCT00000049057	RBFOX1-204	3416	XM_021088069	ENSSSCP00000059490	444 (aa)	XP_020943728	A0A287BS62
ENSSSCT00000058259	RBFOX1-202	5545	-	ENSSSCP00000044024	414 (aa)	-	A0A287AJG2
ENSSSCT00000049107	RBFOX1-201	5548	XM_021088075	ENSSSCP00000036487	415 (aa)	XP_020943734	A0A286ZXS1

Gene Model

Click here to download ENSSSCG00000007917's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000007917's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000007917	RBFOX1	85	67.213	ENSSSCG00000000152	RBFOX2	96	67.412
ENSSSCG00000007917	RBFOX1	79	70.819	ENSSSCG00000039498	RBFOX3	97	61.318

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000007917	RBFOX1	100	98.870	ENSG00000078328	RBFOX1	100	98.481	Homo_sapiens
ENSSSCG00000007917	RBFOX1	94	74.083	ENSAPOG00000003197	rbfox1	95	74.937	Acanthochromis_polyacanthus
ENSSSCG00000007917	RBFOX1	60	96.000	ENSAMEG00000008605	RBFOX1	100	96.000	Ailuropoda_melanoleuca
ENSSSCG00000007917	RBFOX1	62	67.871	ENSACIG00000005478	rbfox1	68	64.189	Amphilophus_citrinellus
ENSSSCG00000007917	RBFOX1	78	71.088	ENSAOCG00000008283	rbfox1	96	70.358	Amphiprion_ocellaris
ENSSSCG00000007917	RBFOX1	88	70.137	ENSAPEG00000010636	rbfox1	96	70.027	Amphiprion_percula
ENSSSCG00000007917	RBFOX1	78	69.932	ENSATEG00000007513	rbfox1	97	68.489	Anabas_testudineus
ENSSSCG00000007917	RBFOX1	91	94.180	ENSAPLG00000013263	RBFOX1	95	94.180	Anas_platyrhynchos
ENSSSCG00000007917	RBFOX1	91	87.335	ENSACAG00000004013	RBFOX1	95	87.335	Anolis_carolinensis
ENSSSCG00000007917	RBFOX1	100	99.153	ENSANAG00000029527	RBFOX1	94	98.408	Aotus_nancymaae
ENSSSCG00000007917	RBFOX1	60	88.626	ENSAMXG00000002431	rbfox1	65	85.965	Astyanax_mexicanus
ENSSSCG00000007917	RBFOX1	100	99.435	ENSBTAG00000007210	RBFOX1	97	99.455	Bos_taurus
ENSSSCG00000007917	RBFOX1	100	98.870	ENSCJAG00000017351	RBFOX1	97	98.025	Callithrix_jacchus
ENSSSCG00000007917	RBFOX1	100	96.901	ENSCAFG00000019082	RBFOX1	100	99.241	Canis_familiaris
ENSSSCG00000007917	RBFOX1	100	83.051	ENSCAFG00020024881	RBFOX1	100	85.606	Canis_lupus_dingo
ENSSSCG00000007917	RBFOX1	100	99.435	ENSCHIG00000023549	RBFOX1	100	99.494	Capra_hircus
ENSSSCG00000007917	RBFOX1	100	98.588	ENSTSYG00000005334	RBFOX1	100	96.627	Carlito_syrichta
ENSSSCG00000007917	RBFOX1	98	97.284	ENSCAPG00000017669	RBFOX1	97	98.133	Cavia_aperea
ENSSSCG00000007917	RBFOX1	98	97.284	ENSCPOG00000011314	RBFOX1	97	97.284	Cavia_porcellus
ENSSSCG00000007917	RBFOX1	100	99.153	ENSCCAG00000023031	RBFOX1	97	98.025	Cebus_capucinus
ENSSSCG00000007917	RBFOX1	100	98.870	ENSCATG00000033816	RBFOX1	100	98.649	Cercocebus_atys
ENSSSCG00000007917	RBFOX1	100	98.305	ENSCLAG00000012761	RBFOX1	100	95.443	Chinchilla_lanigera
ENSSSCG00000007917	RBFOX1	100	98.870	ENSCSAG00000008739	RBFOX1	97	96.730	Chlorocebus_sabaeus
ENSSSCG00000007917	RBFOX1	98	76.049	ENSCHOG00000012843	RBFOX1	97	76.049	Choloepus_hoffmanni
ENSSSCG00000007917	RBFOX1	100	94.915	ENSCPBG00000026626	RBFOX1	97	92.371	Chrysemys_picta_bellii
ENSSSCG00000007917	RBFOX1	100	98.870	ENSCANG00000033125	RBFOX1	97	98.025	Colobus_angolensis_palliatus
ENSSSCG00000007917	RBFOX1	98	96.790	ENSCGRG00001013729	Rbfox1	97	96.790	Cricetulus_griseus_chok1gshd
ENSSSCG00000007917	RBFOX1	98	96.790	ENSCGRG00000003272	Rbfox1	97	96.790	Cricetulus_griseus_crigri
ENSSSCG00000007917	RBFOX1	88	70.312	ENSCSEG00000008840	rbfox1	96	70.312	Cynoglossus_semilaevis
ENSSSCG00000007917	RBFOX1	91	80.371	ENSDARG00000014746	rbfox1	100	85.854	Danio_rerio
ENSSSCG00000007917	RBFOX1	91	98.143	ENSDNOG00000043612	RBFOX1	91	98.143	Dasypus_novemcinctus
ENSSSCG00000007917	RBFOX1	91	95.251	ENSDORG00000010024	Rbfox1	94	94.987	Dipodomys_ordii
ENSSSCG00000007917	RBFOX1	98	77.531	ENSETEG00000003771	RBFOX1	97	77.531	Echinops_telfairi
ENSSSCG00000007917	RBFOX1	99	99.034	ENSEASG00005011599	RBFOX1	100	99.494	Equus_asinus_asinus
ENSSSCG00000007917	RBFOX1	100	99.153	ENSECAG00000012667	RBFOX1	100	99.241	Equus_caballus
ENSSSCG00000007917	RBFOX1	79	63.596	ENSELUG00000013096	rbfox1	95	62.281	Esox_lucius
ENSSSCG00000007917	RBFOX1	100	98.874	ENSFCAG00000025322	RBFOX1	100	98.874	Felis_catus
ENSSSCG00000007917	RBFOX1	88	94.855	ENSFALG00000004027	RBFOX1	97	94.427	Ficedula_albicollis
ENSSSCG00000007917	RBFOX1	98	97.778	ENSFDAG00000007388	RBFOX1	97	97.778	Fukomys_damarensis
ENSSSCG00000007917	RBFOX1	100	94.915	ENSGALG00000034325	RBFOX1	100	91.842	Gallus_gallus
ENSSSCG00000007917	RBFOX1	100	94.633	ENSGAGG00000023681	RBFOX1	100	92.405	Gopherus_agassizii
ENSSSCG00000007917	RBFOX1	100	98.870	ENSGGOG00000016871	-	97	98.025	Gorilla_gorilla
ENSSSCG00000007917	RBFOX1	100	98.588	ENSHGLG00000016944	RBFOX1	100	95.696	Heterocephalus_glaber_female
ENSSSCG00000007917	RBFOX1	100	98.588	ENSHGLG00100003272	RBFOX1	100	95.696	Heterocephalus_glaber_male
ENSSSCG00000007917	RBFOX1	90	68.085	ENSHCOG00000016419	rbfox1	91	70.115	Hippocampus_comes
ENSSSCG00000007917	RBFOX1	100	82.486	ENSIPUG00000015215	rbfox1	96	82.967	Ictalurus_punctatus
ENSSSCG00000007917	RBFOX1	100	98.305	ENSSTOG00000000322	RBFOX1	97	96.790	Ictidomys_tridecemlineatus
ENSSSCG00000007917	RBFOX1	98	93.827	ENSJJAG00000002575	Rbfox1	97	93.827	Jaculus_jaculus
ENSSSCG00000007917	RBFOX1	91	73.028	ENSLBEG00000014659	rbfox1	97	73.028	Labrus_bergylta
ENSSSCG00000007917	RBFOX1	92	85.156	ENSLOCG00000006675	rbfox1	96	85.564	Lepisosteus_oculatus
ENSSSCG00000007917	RBFOX1	71	98.983	ENSLAFG00000011480	RBFOX1	96	98.983	Loxodonta_africana
ENSSSCG00000007917	RBFOX1	100	98.588	ENSMFAG00000036447	RBFOX1	97	97.778	Macaca_fascicularis
ENSSSCG00000007917	RBFOX1	100	98.588	ENSMMUG00000003458	RBFOX1	99	96.196	Macaca_mulatta
ENSSSCG00000007917	RBFOX1	100	98.588	ENSMNEG00000032034	RBFOX1	100	96.622	Macaca_nemestrina
ENSSSCG00000007917	RBFOX1	100	98.870	ENSMLEG00000015382	RBFOX1	97	98.025	Mandrillus_leucophaeus
ENSSSCG00000007917	RBFOX1	88	73.879	ENSMAMG00000003142	rbfox1	96	74.406	Mastacembelus_armatus
ENSSSCG00000007917	RBFOX1	76	89.219	ENSMGAG00000008606	RBFOX1	96	87.857	Meleagris_gallopavo
ENSSSCG00000007917	RBFOX1	90	57.258	ENSMAUG00000020570	Rbfox1	93	56.183	Mesocricetus_auratus
ENSSSCG00000007917	RBFOX1	100	98.588	ENSMICG00000034286	RBFOX1	100	98.228	Microcebus_murinus
ENSSSCG00000007917	RBFOX1	98	96.790	ENSMOCG00000020932	Rbfox1	97	97.305	Microtus_ochrogaster
ENSSSCG00000007917	RBFOX1	90	69.470	ENSMMOG00000009716	rbfox1	95	66.307	Mola_mola
ENSSSCG00000007917	RBFOX1	100	97.175	ENSMODG00000005826	RBFOX1	100	97.175	Monodelphis_domestica
ENSSSCG00000007917	RBFOX1	97	71.327	ENSMALG00000003337	rbfox1	95	74.807	Monopterus_albus
ENSSSCG00000007917	RBFOX1	100	97.458	MGP_CAROLIEiJ_G0020427	Rbfox1	97	97.037	Mus_caroli
ENSSSCG00000007917	RBFOX1	98	96.790	ENSMUSG00000008658	Rbfox1	97	96.790	Mus_musculus
ENSSSCG00000007917	RBFOX1	100	97.458	MGP_PahariEiJ_G0016135	Rbfox1	97	97.037	Mus_pahari
ENSSSCG00000007917	RBFOX1	100	96.893	MGP_SPRETEiJ_G0021321	Rbfox1	97	96.543	Mus_spretus
ENSSSCG00000007917	RBFOX1	100	98.588	ENSMPUG00000014822	RBFOX1	100	96.709	Mustela_putorius_furo
ENSSSCG00000007917	RBFOX1	71	99.320	ENSMLUG00000015896	RBFOX1	96	99.320	Myotis_lucifugus
ENSSSCG00000007917	RBFOX1	98	97.531	ENSNGAG00000023276	Rbfox1	97	98.133	Nannospalax_galili
ENSSSCG00000007917	RBFOX1	94	58.810	ENSNBRG00000011084	rbfox1	95	58.810	Neolamprologus_brichardi
ENSSSCG00000007917	RBFOX1	100	98.588	ENSNLEG00000010017	-	97	97.778	Nomascus_leucogenys
ENSSSCG00000007917	RBFOX1	98	80.000	ENSMEUG00000012525	RBFOX1	97	80.000	Notamacropus_eugenii
ENSSSCG00000007917	RBFOX1	98	79.259	ENSOPRG00000006199	-	97	79.259	Ochotona_princeps
ENSSSCG00000007917	RBFOX1	98	96.543	ENSODEG00000013166	RBFOX1	97	96.543	Octodon_degus
ENSSSCG00000007917	RBFOX1	100	96.328	ENSOANG00000002379	RBFOX1	97	94.005	Ornithorhynchus_anatinus
ENSSSCG00000007917	RBFOX1	58	97.073	ENSOCUG00000001205	-	97	96.330	Oryctolagus_cuniculus
ENSSSCG00000007917	RBFOX1	91	97.878	ENSOGAG00000025535	RBFOX1	95	97.878	Otolemur_garnettii
ENSSSCG00000007917	RBFOX1	66	87.069	ENSOARG00000005135	RBFOX1	100	85.657	Ovis_aries
ENSSSCG00000007917	RBFOX1	100	98.870	ENSPPAG00000036238	-	100	98.907	Pan_paniscus
ENSSSCG00000007917	RBFOX1	100	98.870	ENSPPRG00000006546	RBFOX1	97	98.519	Panthera_pardus
ENSSSCG00000007917	RBFOX1	100	80.508	ENSPTIG00000021154	RBFOX1	96	85.638	Panthera_tigris_altaica
ENSSSCG00000007917	RBFOX1	100	98.870	ENSPTRG00000007744	RBFOX1	97	98.025	Pan_troglodytes
ENSSSCG00000007917	RBFOX1	100	98.870	ENSPANG00000026500	RBFOX1	97	98.025	Papio_anubis
ENSSSCG00000007917	RBFOX1	79	83.871	ENSPKIG00000019353	rbfox1	86	82.534	Paramormyrops_kingsleyae
ENSSSCG00000007917	RBFOX1	100	82.584	ENSPKIG00000009667	-	99	79.730	Paramormyrops_kingsleyae
ENSSSCG00000007917	RBFOX1	91	94.415	ENSPSIG00000006523	RBFOX1	94	94.415	Pelodiscus_sinensis
ENSSSCG00000007917	RBFOX1	98	97.037	ENSPEMG00000017607	Rbfox1	97	97.037	Peromyscus_maniculatus_bairdii
ENSSSCG00000007917	RBFOX1	75	92.509	ENSPCIG00000026887	RBFOX1	100	89.623	Phascolarctos_cinereus
ENSSSCG00000007917	RBFOX1	100	98.870	ENSPPYG00000007079	-	100	96.456	Pongo_abelii
ENSSSCG00000007917	RBFOX1	91	89.418	ENSPCAG00000002630	RBFOX1	100	89.418	Procavia_capensis
ENSSSCG00000007917	RBFOX1	100	98.870	ENSPCOG00000025687	RBFOX1	97	98.025	Propithecus_coquereli
ENSSSCG00000007917	RBFOX1	98	94.321	ENSPVAG00000013467	RBFOX1	97	94.321	Pteropus_vampyrus
ENSSSCG00000007917	RBFOX1	88	79.896	ENSPNAG00000023109	rbfox1	96	79.896	Pygocentrus_nattereri
ENSSSCG00000007917	RBFOX1	100	94.930	ENSRNOG00000002827	Rbfox1	97	97.275	Rattus_norvegicus
ENSSSCG00000007917	RBFOX1	100	98.870	ENSRBIG00000044478	RBFOX1	100	97.108	Rhinopithecus_bieti
ENSSSCG00000007917	RBFOX1	100	98.870	ENSRROG00000044411	RBFOX1	100	98.481	Rhinopithecus_roxellana
ENSSSCG00000007917	RBFOX1	100	98.870	ENSSBOG00000033726	RBFOX1	100	98.734	Saimiri_boliviensis_boliviensis
ENSSSCG00000007917	RBFOX1	100	87.606	ENSSHAG00000009257	RBFOX1	100	89.859	Sarcophilus_harrisii
ENSSSCG00000007917	RBFOX1	91	70.526	ENSSFOG00015023675	rbfox1	93	85.714	Scleropages_formosus
ENSSSCG00000007917	RBFOX1	88	69.279	ENSSFOG00015009955	-	87	67.914	Scleropages_formosus
ENSSSCG00000007917	RBFOX1	94	74.510	ENSSMAG00000015505	rbfox1	94	73.569	Scophthalmus_maximus
ENSSSCG00000007917	RBFOX1	91	73.351	ENSSDUG00000016413	rbfox1	95	73.087	Seriola_dumerili
ENSSSCG00000007917	RBFOX1	90	69.876	ENSSLDG00000009353	rbfox1	95	71.125	Seriola_lalandi_dorsalis
ENSSSCG00000007917	RBFOX1	90	79.814	ENSSPUG00000009732	RBFOX1	99	71.279	Sphenodon_punctatus
ENSSSCG00000007917	RBFOX1	91	75.064	ENSSPAG00000009723	rbfox1	97	74.809	Stegastes_partitus
ENSSSCG00000007917	RBFOX1	91	94.415	ENSTGUG00000004562	RBFOX1	97	94.415	Taeniopygia_guttata
ENSSSCG00000007917	RBFOX1	91	74.809	ENSTRUG00000020940	rbfox1	96	74.809	Takifugu_rubripes
ENSSSCG00000007917	RBFOX1	70	53.716	ENSTNIG00000002567	rbfox1	100	58.280	Tetraodon_nigroviridis
ENSSSCG00000007917	RBFOX1	78	89.655	ENSTBEG00000009169	-	78	89.655	Tupaia_belangeri
ENSSSCG00000007917	RBFOX1	98	99.506	ENSTTRG00000005700	RBFOX1	97	99.506	Tursiops_truncatus
ENSSSCG00000007917	RBFOX1	100	94.068	ENSUAMG00000024633	RBFOX1	100	94.192	Ursus_americanus
ENSSSCG00000007917	RBFOX1	100	84.181	ENSUMAG00000003579	RBFOX1	99	85.570	Ursus_maritimus
ENSSSCG00000007917	RBFOX1	78	100.000	ENSVPAG00000001284	RBFOX1	78	100.000	Vicugna_pacos
ENSSSCG00000007917	RBFOX1	100	98.870	ENSVVUG00000017311	RBFOX1	97	96.730	Vulpes_vulpes