EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000007949 (Gene tree)
Gene ID: 100514098
Gene Symbol: SRL
Alias: SAR
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 38375 bases
Position: chr3:38073562-38111936
Accession: 100514098
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000053308	MMR_HSR1	PF01926.23	1.1e-08	1	1
ENSSSCP00000008488	MMR_HSR1	PF01926.23	4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000008712	SRL-201	4754	XM_021086702	ENSSSCP00000008488	804 (aa)	XP_020942361	F1RK48
ENSSSCT00000046974	SRL-202	7094	XM_005653036	ENSSSCP00000053308	449 (aa)	XP_005653093	A0A287BAE0

Gene Model

Click here to download ENSSSCG00000007949's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000007949's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000007949	SRL	66	35.452	ENSSSCG00000020666	EHD4	56	35.526
ENSSSCG00000007949	SRL	87	32.564	ENSSSCG00000023371	EHD2	68	32.812
ENSSSCG00000007949	SRL	81	33.973	ENSSSCG00000013017	EHD1	67	33.973
ENSSSCG00000007949	SRL	87	32.908	ENSSSCG00000035987	EHD3	67	33.875

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000007949	SRL	99	96.875	ENSG00000185739	SRL	99	97.209	Homo_sapiens
ENSSSCG00000007949	SRL	99	82.844	ENSAPOG00000018093	srl	99	83.182	Acanthochromis_polyacanthus
ENSSSCG00000007949	SRL	98	76.417	ENSAPOG00000012432	SRL	98	74.888	Acanthochromis_polyacanthus
ENSSSCG00000007949	SRL	99	97.768	ENSAMEG00000010862	SRL	91	94.894	Ailuropoda_melanoleuca
ENSSSCG00000007949	SRL	98	83.673	ENSACIG00000015799	srl	99	82.743	Amphilophus_citrinellus
ENSSSCG00000007949	SRL	99	75.621	ENSACIG00000015419	SRL	99	75.621	Amphilophus_citrinellus
ENSSSCG00000007949	SRL	98	76.018	ENSAOCG00000017049	SRL	96	76.018	Amphiprion_ocellaris
ENSSSCG00000007949	SRL	96	83.603	ENSAOCG00000007574	srl	99	83.796	Amphiprion_ocellaris
ENSSSCG00000007949	SRL	98	83.673	ENSAPEG00000006911	srl	96	82.018	Amphiprion_percula
ENSSSCG00000007949	SRL	98	72.336	ENSAPEG00000006533	SRL	96	72.336	Amphiprion_percula
ENSSSCG00000007949	SRL	98	83.447	ENSATEG00000024315	srl	96	81.579	Anabas_testudineus
ENSSSCG00000007949	SRL	98	73.789	ENSATEG00000009643	SRL	52	72.907	Anabas_testudineus
ENSSSCG00000007949	SRL	98	89.602	ENSACAG00000016380	SRL	86	87.794	Anolis_carolinensis
ENSSSCG00000007949	SRL	98	73.348	ENSACLG00000024674	SRL	59	70.208	Astatotilapia_calliptera
ENSSSCG00000007949	SRL	98	83.220	ENSACLG00000027685	srl	98	82.405	Astatotilapia_calliptera
ENSSSCG00000007949	SRL	92	77.831	ENSAMXG00000038693	SRL	99	73.894	Astyanax_mexicanus
ENSSSCG00000007949	SRL	98	84.807	ENSAMXG00000018789	srl	89	83.077	Astyanax_mexicanus
ENSSSCG00000007949	SRL	100	97.773	ENSBTAG00000001078	SRL	100	80.048	Bos_taurus
ENSSSCG00000007949	SRL	99	96.875	ENSCJAG00000019750	SRL	96	96.484	Callithrix_jacchus
ENSSSCG00000007949	SRL	99	97.768	ENSCAFG00000019233	SRL	92	94.105	Canis_familiaris
ENSSSCG00000007949	SRL	99	97.768	ENSCAFG00020025024	SRL	99	78.339	Canis_lupus_dingo
ENSSSCG00000007949	SRL	100	97.773	ENSCHIG00000017927	SRL	99	79.106	Capra_hircus
ENSSSCG00000007949	SRL	99	97.768	ENSTSYG00000007919	SRL	99	97.907	Carlito_syrichta
ENSSSCG00000007949	SRL	99	96.875	ENSCPOG00000012643	SRL	96	96.468	Cavia_porcellus
ENSSSCG00000007949	SRL	98	90.950	ENSCCAG00000032646	SRL	99	97.090	Cebus_capucinus
ENSSSCG00000007949	SRL	99	96.875	ENSCATG00000032227	-	96	96.264	Cercocebus_atys
ENSSSCG00000007949	SRL	99	97.098	ENSCLAG00000016242	SRL	96	96.689	Chinchilla_lanigera
ENSSSCG00000007949	SRL	99	96.875	ENSCSAG00000009635	-	82	94.872	Chlorocebus_sabaeus
ENSSSCG00000007949	SRL	86	96.114	ENSCHOG00000001618	SRL	85	96.114	Choloepus_hoffmanni
ENSSSCG00000007949	SRL	100	92.765	ENSCPBG00000026371	SRL	96	88.034	Chrysemys_picta_bellii
ENSSSCG00000007949	SRL	93	60.671	ENSCING00000005231	-	91	60.837	Ciona_intestinalis
ENSSSCG00000007949	SRL	99	96.875	ENSCANG00000035872	SRL	99	97.209	Colobus_angolensis_palliatus
ENSSSCG00000007949	SRL	99	96.875	ENSCGRG00001016630	Srl	96	96.468	Cricetulus_griseus_chok1gshd
ENSSSCG00000007949	SRL	99	96.875	ENSCGRG00000005458	Srl	96	96.468	Cricetulus_griseus_crigri
ENSSSCG00000007949	SRL	98	83.220	ENSCSEG00000016151	srl	96	82.080	Cynoglossus_semilaevis
ENSSSCG00000007949	SRL	98	73.077	ENSCSEG00000011866	SRL	89	73.077	Cynoglossus_semilaevis
ENSSSCG00000007949	SRL	98	74.723	ENSCVAG00000022465	SRL	62	73.093	Cyprinodon_variegatus
ENSSSCG00000007949	SRL	98	83.900	ENSCVAG00000003513	srl	97	82.379	Cyprinodon_variegatus
ENSSSCG00000007949	SRL	99	84.152	ENSDARG00000104587	srl	96	84.257	Danio_rerio
ENSSSCG00000007949	SRL	84	78.329	ENSDARG00000112959	CABZ01072309.1	99	78.329	Danio_rerio
ENSSSCG00000007949	SRL	99	96.205	ENSDNOG00000011643	SRL	99	74.616	Dasypus_novemcinctus
ENSSSCG00000007949	SRL	99	96.205	ENSDORG00000014807	Srl	96	95.824	Dipodomys_ordii
ENSSSCG00000007949	SRL	82	65.241	ENSEBUG00000015937	srl	88	67.529	Eptatretus_burgeri
ENSSSCG00000007949	SRL	100	97.550	ENSEASG00005000942	SRL	100	78.916	Equus_asinus_asinus
ENSSSCG00000007949	SRL	100	97.550	ENSECAG00000024219	SRL	96	97.149	Equus_caballus
ENSSSCG00000007949	SRL	98	81.099	ENSELUG00000015616	srl	96	79.443	Esox_lucius
ENSSSCG00000007949	SRL	99	96.875	ENSFCAG00000022075	SRL	96	96.264	Felis_catus
ENSSSCG00000007949	SRL	99	90.604	ENSFALG00000004328	SRL	63	91.610	Ficedula_albicollis
ENSSSCG00000007949	SRL	99	97.098	ENSFDAG00000006199	SRL	96	96.264	Fukomys_damarensis
ENSSSCG00000007949	SRL	98	75.283	ENSFHEG00000011854	SRL	98	76.190	Fundulus_heteroclitus
ENSSSCG00000007949	SRL	98	82.766	ENSFHEG00000011239	srl	95	82.766	Fundulus_heteroclitus
ENSSSCG00000007949	SRL	98	81.236	ENSGMOG00000014954	srl	99	81.236	Gadus_morhua
ENSSSCG00000007949	SRL	99	90.157	ENSGALG00000038884	SRL	96	89.912	Gallus_gallus
ENSSSCG00000007949	SRL	99	82.207	ENSGAFG00000000010	srl	98	81.416	Gambusia_affinis
ENSSSCG00000007949	SRL	98	76.190	ENSGAFG00000016984	SRL	98	76.190	Gambusia_affinis
ENSSSCG00000007949	SRL	98	80.795	ENSGACG00000011332	srl	99	80.795	Gasterosteus_aculeatus
ENSSSCG00000007949	SRL	99	96.875	ENSGGOG00000011312	-	96	96.264	Gorilla_gorilla
ENSSSCG00000007949	SRL	98	83.220	ENSHBUG00000007581	srl	98	82.405	Haplochromis_burtoni
ENSSSCG00000007949	SRL	98	73.128	ENSHBUG00000015710	SRL	59	70.833	Haplochromis_burtoni
ENSSSCG00000007949	SRL	99	97.321	ENSHGLG00000015271	SRL	96	96.909	Heterocephalus_glaber_female
ENSSSCG00000007949	SRL	99	97.321	ENSHGLG00100019378	SRL	96	96.909	Heterocephalus_glaber_male
ENSSSCG00000007949	SRL	98	72.124	ENSHCOG00000001012	SRL	50	71.018	Hippocampus_comes
ENSSSCG00000007949	SRL	98	83.447	ENSHCOG00000008687	srl	98	83.447	Hippocampus_comes
ENSSSCG00000007949	SRL	97	69.725	ENSIPUG00000011609	SRL	95	68.578	Ictalurus_punctatus
ENSSSCG00000007949	SRL	99	82.432	ENSIPUG00000012513	srl	95	82.432	Ictalurus_punctatus
ENSSSCG00000007949	SRL	99	96.429	ENSSTOG00000021151	-	96	96.026	Ictidomys_tridecemlineatus
ENSSSCG00000007949	SRL	99	96.652	ENSJJAG00000016400	Srl	96	96.247	Jaculus_jaculus
ENSSSCG00000007949	SRL	97	83.641	ENSKMAG00000014115	srl	93	85.714	Kryptolebias_marmoratus
ENSSSCG00000007949	SRL	98	76.136	ENSKMAG00000019537	SRL	99	76.136	Kryptolebias_marmoratus
ENSSSCG00000007949	SRL	98	82.993	ENSLBEG00000026643	srl	96	81.360	Labrus_bergylta
ENSSSCG00000007949	SRL	98	76.417	ENSLBEG00000013811	SRL	95	76.190	Labrus_bergylta
ENSSSCG00000007949	SRL	99	85.586	ENSLACG00000002825	SRL	99	85.177	Latimeria_chalumnae
ENSSSCG00000007949	SRL	98	85.941	ENSLOCG00000002644	srl	96	84.956	Lepisosteus_oculatus
ENSSSCG00000007949	SRL	99	96.429	ENSLAFG00000006329	SRL	99	73.212	Loxodonta_africana
ENSSSCG00000007949	SRL	96	97.209	ENSMFAG00000037383	SRL	99	97.209	Macaca_fascicularis
ENSSSCG00000007949	SRL	99	96.875	ENSMNEG00000019236	-	96	96.035	Macaca_nemestrina
ENSSSCG00000007949	SRL	99	88.616	ENSMLEG00000032156	SRL	96	88.132	Mandrillus_leucophaeus
ENSSSCG00000007949	SRL	98	83.220	ENSMAMG00000023322	srl	96	81.938	Mastacembelus_armatus
ENSSSCG00000007949	SRL	98	73.289	ENSMAMG00000013756	SRL	53	73.187	Mastacembelus_armatus
ENSSSCG00000007949	SRL	98	73.348	ENSMZEG00005004010	SRL	57	72.467	Maylandia_zebra
ENSSSCG00000007949	SRL	98	83.220	ENSMZEG00005004548	srl	98	82.405	Maylandia_zebra
ENSSSCG00000007949	SRL	99	90.604	ENSMGAG00000009342	SRL	96	91.864	Meleagris_gallopavo
ENSSSCG00000007949	SRL	99	96.205	ENSMICG00000032307	SRL	96	95.604	Microcebus_murinus
ENSSSCG00000007949	SRL	99	96.205	ENSMOCG00000008208	Srl	96	95.806	Microtus_ochrogaster
ENSSSCG00000007949	SRL	98	72.467	ENSMMOG00000021572	SRL	99	72.467	Mola_mola
ENSSSCG00000007949	SRL	98	82.993	ENSMMOG00000013970	srl	98	82.993	Mola_mola
ENSSSCG00000007949	SRL	100	95.768	ENSMODG00000016380	-	100	65.372	Monodelphis_domestica
ENSSSCG00000007949	SRL	92	75.422	ENSMALG00000000670	SRL	97	74.458	Monopterus_albus
ENSSSCG00000007949	SRL	98	82.766	ENSMALG00000005039	srl	98	82.766	Monopterus_albus
ENSSSCG00000007949	SRL	99	95.982	MGP_CAROLIEiJ_G0020400	Srl	96	95.585	Mus_caroli
ENSSSCG00000007949	SRL	99	95.982	ENSMUSG00000022519	Srl	96	95.585	Mus_musculus
ENSSSCG00000007949	SRL	98	95.928	MGP_PahariEiJ_G0016108	Srl	99	73.913	Mus_pahari
ENSSSCG00000007949	SRL	99	95.982	MGP_SPRETEiJ_G0021294	Srl	96	95.585	Mus_spretus
ENSSSCG00000007949	SRL	99	97.321	ENSMPUG00000015025	SRL	99	77.201	Mustela_putorius_furo
ENSSSCG00000007949	SRL	99	96.429	ENSMLUG00000030733	SRL	99	78.309	Myotis_lucifugus
ENSSSCG00000007949	SRL	99	96.205	ENSNGAG00000019741	Srl	96	95.585	Nannospalax_galili
ENSSSCG00000007949	SRL	98	83.220	ENSNBRG00000023775	srl	97	81.798	Neolamprologus_brichardi
ENSSSCG00000007949	SRL	98	73.348	ENSNBRG00000002422	SRL	62	68.333	Neolamprologus_brichardi
ENSSSCG00000007949	SRL	99	89.955	ENSNLEG00000029051	SRL	96	89.231	Nomascus_leucogenys
ENSSSCG00000007949	SRL	99	89.509	ENSOPRG00000000477	-	99	68.938	Ochotona_princeps
ENSSSCG00000007949	SRL	99	96.429	ENSODEG00000013256	SRL	96	95.806	Octodon_degus
ENSSSCG00000007949	SRL	98	82.993	ENSONIG00000005192	srl	96	81.758	Oreochromis_niloticus
ENSSSCG00000007949	SRL	99	96.875	ENSOCUG00000025140	SRL	99	71.021	Oryctolagus_cuniculus
ENSSSCG00000007949	SRL	98	82.540	ENSORLG00000008291	srl	91	85.492	Oryzias_latipes
ENSSSCG00000007949	SRL	99	75.169	ENSORLG00000015064	SRL	97	75.169	Oryzias_latipes
ENSSSCG00000007949	SRL	98	82.540	ENSORLG00020019784	srl	79	85.492	Oryzias_latipes_hni
ENSSSCG00000007949	SRL	99	75.395	ENSORLG00020018173	SRL	97	75.395	Oryzias_latipes_hni
ENSSSCG00000007949	SRL	98	82.086	ENSORLG00015009342	srl	93	80.574	Oryzias_latipes_hsok
ENSSSCG00000007949	SRL	99	75.395	ENSORLG00015019063	SRL	97	75.395	Oryzias_latipes_hsok
ENSSSCG00000007949	SRL	98	82.766	ENSOMEG00000010006	srl	97	82.688	Oryzias_melastigma
ENSSSCG00000007949	SRL	99	73.465	ENSOMEG00000005682	SRL	53	72.807	Oryzias_melastigma
ENSSSCG00000007949	SRL	99	95.759	ENSOGAG00000029266	SRL	99	72.467	Otolemur_garnettii
ENSSSCG00000007949	SRL	100	97.773	ENSOARG00000003074	SRL	84	97.792	Ovis_aries
ENSSSCG00000007949	SRL	99	96.875	ENSPPAG00000024919	-	99	97.209	Pan_paniscus
ENSSSCG00000007949	SRL	99	97.098	ENSPPRG00000010274	SRL	99	97.442	Panthera_pardus
ENSSSCG00000007949	SRL	99	97.098	ENSPTIG00000015162	SRL	99	97.442	Panthera_tigris_altaica
ENSSSCG00000007949	SRL	99	96.875	ENSPTRG00000007712	SRL	99	97.209	Pan_troglodytes
ENSSSCG00000007949	SRL	99	96.875	ENSPANG00000013804	SRL	98	96.256	Papio_anubis
ENSSSCG00000007949	SRL	98	76.644	ENSPKIG00000024974	SRL	88	76.644	Paramormyrops_kingsleyae
ENSSSCG00000007949	SRL	98	85.034	ENSPKIG00000006405	srl	93	85.034	Paramormyrops_kingsleyae
ENSSSCG00000007949	SRL	99	90.583	ENSPSIG00000008586	SRL	99	71.277	Pelodiscus_sinensis
ENSSSCG00000007949	SRL	99	83.705	ENSPMGG00000021081	srl	97	83.592	Periophthalmus_magnuspinnatus
ENSSSCG00000007949	SRL	98	73.469	ENSPMGG00000023505	-	99	72.748	Periophthalmus_magnuspinnatus
ENSSSCG00000007949	SRL	99	96.205	ENSPEMG00000015842	Srl	96	95.806	Peromyscus_maniculatus_bairdii
ENSSSCG00000007949	SRL	94	67.506	ENSPMAG00000004786	srl	100	67.277	Petromyzon_marinus
ENSSSCG00000007949	SRL	100	96.214	ENSPCIG00000012128	SRL	99	96.247	Phascolarctos_cinereus
ENSSSCG00000007949	SRL	99	80.263	ENSPFOG00000011408	srl	94	80.263	Poecilia_formosa
ENSSSCG00000007949	SRL	99	82.207	ENSPLAG00000008017	srl	98	81.596	Poecilia_latipinna
ENSSSCG00000007949	SRL	98	75.737	ENSPLAG00000002932	SRL	98	74.603	Poecilia_latipinna
ENSSSCG00000007949	SRL	99	82.207	ENSPMEG00000006745	srl	98	81.596	Poecilia_mexicana
ENSSSCG00000007949	SRL	98	73.465	ENSPMEG00000005890	SRL	59	73.789	Poecilia_mexicana
ENSSSCG00000007949	SRL	98	76.871	ENSPREG00000000315	SRL	98	75.737	Poecilia_reticulata
ENSSSCG00000007949	SRL	99	82.432	ENSPREG00000007751	srl	98	82.432	Poecilia_reticulata
ENSSSCG00000007949	SRL	93	97.368	ENSPPYG00000007053	SRL	97	97.602	Pongo_abelii
ENSSSCG00000007949	SRL	100	94.878	ENSPCAG00000003378	-	89	88.778	Procavia_capensis
ENSSSCG00000007949	SRL	99	95.536	ENSPCOG00000023135	SRL	99	96.279	Propithecus_coquereli
ENSSSCG00000007949	SRL	99	97.321	ENSPVAG00000006586	SRL	99	79.011	Pteropus_vampyrus
ENSSSCG00000007949	SRL	98	73.348	ENSPNYG00000003423	SRL	59	70.208	Pundamilia_nyererei
ENSSSCG00000007949	SRL	98	83.220	ENSPNYG00000001200	srl	98	82.405	Pundamilia_nyererei
ENSSSCG00000007949	SRL	98	83.447	ENSPNAG00000023106	srl	96	81.758	Pygocentrus_nattereri
ENSSSCG00000007949	SRL	99	75.000	ENSPNAG00000007361	-	92	75.000	Pygocentrus_nattereri
ENSSSCG00000007949	SRL	99	96.429	ENSRNOG00000005269	Srl	99	69.138	Rattus_norvegicus
ENSSSCG00000007949	SRL	99	96.875	ENSRBIG00000042358	SRL	99	70.419	Rhinopithecus_bieti
ENSSSCG00000007949	SRL	99	96.875	ENSSBOG00000029273	SRL	96	96.484	Saimiri_boliviensis_boliviensis
ENSSSCG00000007949	SRL	100	95.768	ENSSHAG00000011715	-	86	72.214	Sarcophilus_harrisii
ENSSSCG00000007949	SRL	98	84.580	ENSSFOG00015009773	srl	96	83.929	Scleropages_formosus
ENSSSCG00000007949	SRL	98	77.098	ENSSFOG00015021327	SRL	51	75.217	Scleropages_formosus
ENSSSCG00000007949	SRL	99	82.143	ENSSMAG00000016274	srl	98	82.183	Scophthalmus_maximus
ENSSSCG00000007949	SRL	98	73.684	ENSSMAG00000002232	SRL	50	72.687	Scophthalmus_maximus
ENSSSCG00000007949	SRL	98	75.000	ENSSDUG00000009161	SRL	98	75.000	Seriola_dumerili
ENSSSCG00000007949	SRL	98	83.673	ENSSDUG00000010808	srl	97	83.673	Seriola_dumerili
ENSSSCG00000007949	SRL	98	83.673	ENSSLDG00000022024	srl	95	83.673	Seriola_lalandi_dorsalis
ENSSSCG00000007949	SRL	98	74.561	ENSSLDG00000014601	SRL	99	74.670	Seriola_lalandi_dorsalis
ENSSSCG00000007949	SRL	99	89.933	ENSSPUG00000016859	SRL	99	89.625	Sphenodon_punctatus
ENSSSCG00000007949	SRL	98	83.900	ENSSPAG00000019105	srl	96	82.561	Stegastes_partitus
ENSSSCG00000007949	SRL	98	76.136	ENSSPAG00000014254	SRL	98	75.000	Stegastes_partitus
ENSSSCG00000007949	SRL	81	92.265	ENSTGUG00000016121	-	96	93.103	Taeniopygia_guttata
ENSSSCG00000007949	SRL	99	90.380	ENSTGUG00000003951	-	99	90.287	Taeniopygia_guttata
ENSSSCG00000007949	SRL	93	75.359	ENSTRUG00000013310	SRL	55	75.359	Takifugu_rubripes
ENSSSCG00000007949	SRL	99	83.070	ENSTRUG00000006005	srl	96	81.898	Takifugu_rubripes
ENSSSCG00000007949	SRL	99	82.844	ENSTNIG00000009739	srl	96	81.678	Tetraodon_nigroviridis
ENSSSCG00000007949	SRL	97	97.712	ENSTTRG00000002709	-	69	97.727	Tursiops_truncatus
ENSSSCG00000007949	SRL	99	97.545	ENSUAMG00000005701	SRL	99	79.044	Ursus_americanus
ENSSSCG00000007949	SRL	99	97.768	ENSUMAG00000002574	SRL	99	78.806	Ursus_maritimus
ENSSSCG00000007949	SRL	99	97.768	ENSVVUG00000016331	-	87	79.877	Vulpes_vulpes
ENSSSCG00000007949	SRL	99	88.989	ENSXETG00000017313	srl	99	88.989	Xenopus_tropicalis
ENSSSCG00000007949	SRL	94	85.238	ENSXCOG00000010424	srl	96	85.238	Xiphophorus_couchianus
ENSSSCG00000007949	SRL	98	75.737	ENSXCOG00000014584	SRL	98	75.737	Xiphophorus_couchianus
ENSSSCG00000007949	SRL	99	82.883	ENSXMAG00000004625	srl	92	81.898	Xiphophorus_maculatus
ENSSSCG00000007949	SRL	98	73.789	ENSXMAG00000027598	SRL	62	73.568	Xiphophorus_maculatus