EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000008000 (Gene tree)
Gene ID: 100524553
Gene Symbol: RPUSD1
Alias: C16orf40|MGC19600|RLUCL
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 5930 bases
Position: chr3:41009611-41015540
Accession: 100524553
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000008544	PseudoU_synth_2	PF00849.22	1.7e-24	1	1
ENSSSCP00000039374	PseudoU_synth_2	PF00849.22	1.7e-24	1	1
ENSSSCP00000043367	PseudoU_synth_2	PF00849.22	2.8e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000065630	RPUSD1-201	4606	XM_003124698	ENSSSCP00000043367	312 (aa)	XP_003124746	A0A287AHB1
ENSSSCT00000008768	RPUSD1-203	1096	XM_005662237	ENSSSCP00000008544	260 (aa)	XP_005662294	F1RG52
ENSSSCT00000038767	RPUSD1-202	3936	-	ENSSSCP00000039374	260 (aa)	-	F1RG52

Gene Model

Click here to download ENSSSCG00000008000's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000008000's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000008000	RPUSD1	98	89.370	ENSG00000007376	RPUSD1	100	91.071	Homo_sapiens
ENSSSCG00000008000	RPUSD1	98	65.748	ENSAPOG00000022221	rpusd1	98	57.468	Acanthochromis_polyacanthus
ENSSSCG00000008000	RPUSD1	98	87.402	ENSAMEG00000007461	RPUSD1	100	83.333	Ailuropoda_melanoleuca
ENSSSCG00000008000	RPUSD1	98	66.929	ENSACIG00000015863	rpusd1	98	58.766	Amphilophus_citrinellus
ENSSSCG00000008000	RPUSD1	98	66.142	ENSAOCG00000021975	rpusd1	95	57.377	Amphiprion_ocellaris
ENSSSCG00000008000	RPUSD1	98	65.748	ENSAPEG00000001316	rpusd1	95	57.049	Amphiprion_percula
ENSSSCG00000008000	RPUSD1	98	65.748	ENSATEG00000002984	rpusd1	98	58.033	Anabas_testudineus
ENSSSCG00000008000	RPUSD1	72	70.526	ENSAPLG00000012316	RPUSD1	100	62.903	Anas_platyrhynchos
ENSSSCG00000008000	RPUSD1	98	75.591	ENSACAG00000008953	RPUSD1	100	67.203	Anolis_carolinensis
ENSSSCG00000008000	RPUSD1	98	89.764	ENSANAG00000024709	RPUSD1	100	86.859	Aotus_nancymaae
ENSSSCG00000008000	RPUSD1	98	67.323	ENSACLG00000013692	rpusd1	98	59.609	Astatotilapia_calliptera
ENSSSCG00000008000	RPUSD1	98	65.882	ENSAMXG00000019802	rpusd1	100	59.547	Astyanax_mexicanus
ENSSSCG00000008000	RPUSD1	99	93.385	ENSBTAG00000000179	RPUSD1	100	89.744	Bos_taurus
ENSSSCG00000008000	RPUSD1	98	89.370	ENSCJAG00000012253	RPUSD1	100	85.897	Callithrix_jacchus
ENSSSCG00000008000	RPUSD1	99	86.770	ENSCAFG00000019614	RPUSD1	100	83.654	Canis_familiaris
ENSSSCG00000008000	RPUSD1	99	86.770	ENSCAFG00020008891	RPUSD1	100	83.654	Canis_lupus_dingo
ENSSSCG00000008000	RPUSD1	99	92.607	ENSCHIG00000012872	RPUSD1	100	88.782	Capra_hircus
ENSSSCG00000008000	RPUSD1	98	91.339	ENSTSYG00000036934	RPUSD1	100	84.295	Carlito_syrichta
ENSSSCG00000008000	RPUSD1	99	86.381	ENSCAPG00000014219	RPUSD1	100	82.372	Cavia_aperea
ENSSSCG00000008000	RPUSD1	99	86.381	ENSCPOG00000034604	RPUSD1	100	82.372	Cavia_porcellus
ENSSSCG00000008000	RPUSD1	98	88.976	ENSCCAG00000034385	RPUSD1	100	86.538	Cebus_capucinus
ENSSSCG00000008000	RPUSD1	98	89.764	ENSCATG00000042983	RPUSD1	100	85.897	Cercocebus_atys
ENSSSCG00000008000	RPUSD1	99	87.938	ENSCLAG00000013966	RPUSD1	100	83.654	Chinchilla_lanigera
ENSSSCG00000008000	RPUSD1	98	89.764	ENSCSAG00000012121	RPUSD1	100	85.897	Chlorocebus_sabaeus
ENSSSCG00000008000	RPUSD1	98	72.835	ENSCPBG00000021101	RPUSD1	99	64.935	Chrysemys_picta_bellii
ENSSSCG00000008000	RPUSD1	98	89.764	ENSCANG00000028576	RPUSD1	98	87.226	Colobus_angolensis_palliatus
ENSSSCG00000008000	RPUSD1	98	87.008	ENSCGRG00001014253	Rpusd1	100	81.731	Cricetulus_griseus_chok1gshd
ENSSSCG00000008000	RPUSD1	98	87.008	ENSCGRG00000017995	Rpusd1	100	81.731	Cricetulus_griseus_crigri
ENSSSCG00000008000	RPUSD1	98	63.922	ENSCSEG00000018512	rpusd1	100	56.090	Cynoglossus_semilaevis
ENSSSCG00000008000	RPUSD1	98	64.567	ENSCVAG00000022746	rpusd1	98	56.721	Cyprinodon_variegatus
ENSSSCG00000008000	RPUSD1	98	67.843	ENSDARG00000060192	rpusd1	100	61.489	Danio_rerio
ENSSSCG00000008000	RPUSD1	98	88.189	ENSDNOG00000003721	RPUSD1	100	84.615	Dasypus_novemcinctus
ENSSSCG00000008000	RPUSD1	99	89.883	ENSDORG00000026656	Rpusd1	100	84.936	Dipodomys_ordii
ENSSSCG00000008000	RPUSD1	92	53.333	ENSEBUG00000008767	rpusd1	94	45.846	Eptatretus_burgeri
ENSSSCG00000008000	RPUSD1	99	90.272	ENSEASG00005018421	RPUSD1	76	87.342	Equus_asinus_asinus
ENSSSCG00000008000	RPUSD1	98	61.176	ENSELUG00000014307	rpusd1	88	54.397	Esox_lucius
ENSSSCG00000008000	RPUSD1	99	86.381	ENSFCAG00000010359	RPUSD1	100	83.333	Felis_catus
ENSSSCG00000008000	RPUSD1	98	73.228	ENSFALG00000003211	RPUSD1	100	65.696	Ficedula_albicollis
ENSSSCG00000008000	RPUSD1	99	86.770	ENSFDAG00000013398	RPUSD1	100	83.013	Fukomys_damarensis
ENSSSCG00000008000	RPUSD1	98	64.173	ENSFHEG00000004736	rpusd1	98	56.393	Fundulus_heteroclitus
ENSSSCG00000008000	RPUSD1	99	62.548	ENSGMOG00000010756	rpusd1	98	56.066	Gadus_morhua
ENSSSCG00000008000	RPUSD1	98	74.016	ENSGALG00000005315	RPUSD1	100	67.961	Gallus_gallus
ENSSSCG00000008000	RPUSD1	98	64.567	ENSGAFG00000009886	rpusd1	98	57.049	Gambusia_affinis
ENSSSCG00000008000	RPUSD1	97	65.873	ENSGACG00000014276	rpusd1	97	57.756	Gasterosteus_aculeatus
ENSSSCG00000008000	RPUSD1	98	72.835	ENSGAGG00000004181	RPUSD1	99	64.610	Gopherus_agassizii
ENSSSCG00000008000	RPUSD1	98	90.157	ENSGGOG00000013997	RPUSD1	100	86.538	Gorilla_gorilla
ENSSSCG00000008000	RPUSD1	98	66.929	ENSHBUG00000023728	rpusd1	98	59.283	Haplochromis_burtoni
ENSSSCG00000008000	RPUSD1	99	87.160	ENSHGLG00000002595	RPUSD1	100	83.013	Heterocephalus_glaber_female
ENSSSCG00000008000	RPUSD1	99	87.160	ENSHGLG00100014303	RPUSD1	100	83.013	Heterocephalus_glaber_male
ENSSSCG00000008000	RPUSD1	98	65.490	ENSHCOG00000002390	rpusd1	99	57.516	Hippocampus_comes
ENSSSCG00000008000	RPUSD1	98	69.020	ENSIPUG00000001570	rpusd1	99	61.935	Ictalurus_punctatus
ENSSSCG00000008000	RPUSD1	98	89.370	ENSSTOG00000004276	RPUSD1	100	84.936	Ictidomys_tridecemlineatus
ENSSSCG00000008000	RPUSD1	98	89.370	ENSJJAG00000015696	Rpusd1	100	84.615	Jaculus_jaculus
ENSSSCG00000008000	RPUSD1	98	64.567	ENSKMAG00000017287	rpusd1	98	57.377	Kryptolebias_marmoratus
ENSSSCG00000008000	RPUSD1	98	65.748	ENSLBEG00000022502	rpusd1	98	57.377	Labrus_bergylta
ENSSSCG00000008000	RPUSD1	98	65.748	ENSLBEG00000013354	RPUSD1	98	57.377	Labrus_bergylta
ENSSSCG00000008000	RPUSD1	98	69.291	ENSLACG00000008869	RPUSD1	99	61.688	Latimeria_chalumnae
ENSSSCG00000008000	RPUSD1	83	74.194	ENSLOCG00000005682	rpusd1	99	74.194	Lepisosteus_oculatus
ENSSSCG00000008000	RPUSD1	99	85.214	ENSLAFG00000002115	RPUSD1	100	80.449	Loxodonta_africana
ENSSSCG00000008000	RPUSD1	98	89.764	ENSMFAG00000003961	RPUSD1	100	86.218	Macaca_fascicularis
ENSSSCG00000008000	RPUSD1	98	89.764	ENSMMUG00000000842	RPUSD1	100	86.218	Macaca_mulatta
ENSSSCG00000008000	RPUSD1	98	89.764	ENSMNEG00000042712	RPUSD1	100	86.218	Macaca_nemestrina
ENSSSCG00000008000	RPUSD1	98	89.764	ENSMLEG00000030591	RPUSD1	100	86.218	Mandrillus_leucophaeus
ENSSSCG00000008000	RPUSD1	98	66.142	ENSMAMG00000004735	rpusd1	98	58.766	Mastacembelus_armatus
ENSSSCG00000008000	RPUSD1	98	67.323	ENSMZEG00005003214	rpusd1	98	59.609	Maylandia_zebra
ENSSSCG00000008000	RPUSD1	95	74.089	ENSMGAG00000005447	RPUSD1	99	67.219	Meleagris_gallopavo
ENSSSCG00000008000	RPUSD1	98	77.907	ENSMAUG00000019998	Rpusd1	100	77.444	Mesocricetus_auratus
ENSSSCG00000008000	RPUSD1	99	88.327	ENSMICG00000017561	RPUSD1	100	85.577	Microcebus_murinus
ENSSSCG00000008000	RPUSD1	98	88.976	ENSMOCG00000014082	Rpusd1	100	83.974	Microtus_ochrogaster
ENSSSCG00000008000	RPUSD1	98	64.314	ENSMMOG00000012569	rpusd1	90	66.939	Mola_mola
ENSSSCG00000008000	RPUSD1	98	75.591	ENSMODG00000016882	RPUSD1	100	67.722	Monodelphis_domestica
ENSSSCG00000008000	RPUSD1	98	65.748	ENSMALG00000017818	rpusd1	98	58.117	Monopterus_albus
ENSSSCG00000008000	RPUSD1	98	87.008	MGP_CAROLIEiJ_G0021244	Rpusd1	100	83.013	Mus_caroli
ENSSSCG00000008000	RPUSD1	98	87.795	ENSMUSG00000041199	Rpusd1	100	83.974	Mus_musculus
ENSSSCG00000008000	RPUSD1	98	86.614	MGP_PahariEiJ_G0023562	Rpusd1	100	81.529	Mus_pahari
ENSSSCG00000008000	RPUSD1	98	87.795	MGP_SPRETEiJ_G0022155	Rpusd1	100	83.974	Mus_spretus
ENSSSCG00000008000	RPUSD1	99	84.436	ENSMPUG00000015897	RPUSD1	100	83.013	Mustela_putorius_furo
ENSSSCG00000008000	RPUSD1	98	90.945	ENSMLUG00000001089	RPUSD1	100	86.859	Myotis_lucifugus
ENSSSCG00000008000	RPUSD1	98	88.189	ENSNGAG00000003595	Rpusd1	100	83.333	Nannospalax_galili
ENSSSCG00000008000	RPUSD1	95	68.016	ENSNBRG00000006457	rpusd1	98	59.016	Neolamprologus_brichardi
ENSSSCG00000008000	RPUSD1	56	82.286	ENSNLEG00000008424	-	100	82.286	Nomascus_leucogenys
ENSSSCG00000008000	RPUSD1	98	75.984	ENSMEUG00000016049	RPUSD1	100	68.790	Notamacropus_eugenii
ENSSSCG00000008000	RPUSD1	98	79.134	ENSOPRG00000008340	RPUSD1	99	74.516	Ochotona_princeps
ENSSSCG00000008000	RPUSD1	99	87.938	ENSODEG00000016945	RPUSD1	100	82.372	Octodon_degus
ENSSSCG00000008000	RPUSD1	98	66.142	ENSONIG00000015672	rpusd1	99	58.632	Oreochromis_niloticus
ENSSSCG00000008000	RPUSD1	98	66.142	ENSORLG00000013009	rpusd1	99	58.147	Oryzias_latipes
ENSSSCG00000008000	RPUSD1	98	65.748	ENSORLG00020010382	rpusd1	99	57.792	Oryzias_latipes_hni
ENSSSCG00000008000	RPUSD1	98	64.961	ENSORLG00015021354	rpusd1	99	57.188	Oryzias_latipes_hsok
ENSSSCG00000008000	RPUSD1	98	65.354	ENSOMEG00000021426	rpusd1	98	58.689	Oryzias_melastigma
ENSSSCG00000008000	RPUSD1	99	88.716	ENSOGAG00000003795	RPUSD1	100	87.179	Otolemur_garnettii
ENSSSCG00000008000	RPUSD1	98	92.913	ENSOARG00000014254	RPUSD1	100	88.462	Ovis_aries
ENSSSCG00000008000	RPUSD1	98	89.764	ENSPPAG00000034797	RPUSD1	100	86.538	Pan_paniscus
ENSSSCG00000008000	RPUSD1	99	86.381	ENSPPRG00000012389	RPUSD1	100	82.222	Panthera_pardus
ENSSSCG00000008000	RPUSD1	99	85.992	ENSPTIG00000008545	RPUSD1	92	81.905	Panthera_tigris_altaica
ENSSSCG00000008000	RPUSD1	98	89.764	ENSPTRG00000007565	RPUSD1	100	86.538	Pan_troglodytes
ENSSSCG00000008000	RPUSD1	98	88.976	ENSPANG00000024401	RPUSD1	100	85.577	Papio_anubis
ENSSSCG00000008000	RPUSD1	99	68.605	ENSPKIG00000018890	rpusd1	91	61.661	Paramormyrops_kingsleyae
ENSSSCG00000008000	RPUSD1	98	73.228	ENSPSIG00000013945	RPUSD1	100	66.019	Pelodiscus_sinensis
ENSSSCG00000008000	RPUSD1	98	62.598	ENSPMGG00000014950	rpusd1	98	56.863	Periophthalmus_magnuspinnatus
ENSSSCG00000008000	RPUSD1	98	88.189	ENSPEMG00000000497	Rpusd1	100	84.295	Peromyscus_maniculatus_bairdii
ENSSSCG00000008000	RPUSD1	100	58.935	ENSPMAG00000001563	rpusd1	84	60.000	Petromyzon_marinus
ENSSSCG00000008000	RPUSD1	98	76.378	ENSPCIG00000021216	-	94	68.269	Phascolarctos_cinereus
ENSSSCG00000008000	RPUSD1	98	65.354	ENSPFOG00000007946	rpusd1	98	58.361	Poecilia_formosa
ENSSSCG00000008000	RPUSD1	98	65.354	ENSPLAG00000011925	rpusd1	98	58.361	Poecilia_latipinna
ENSSSCG00000008000	RPUSD1	98	64.567	ENSPMEG00000002910	rpusd1	98	57.705	Poecilia_mexicana
ENSSSCG00000008000	RPUSD1	98	65.354	ENSPREG00000019851	rpusd1	98	57.705	Poecilia_reticulata
ENSSSCG00000008000	RPUSD1	99	71.984	ENSPCAG00000002258	RPUSD1	100	68.910	Procavia_capensis
ENSSSCG00000008000	RPUSD1	99	89.494	ENSPCOG00000022582	RPUSD1	100	87.500	Propithecus_coquereli
ENSSSCG00000008000	RPUSD1	100	85.256	ENSPVAG00000013104	RPUSD1	100	85.256	Pteropus_vampyrus
ENSSSCG00000008000	RPUSD1	98	66.929	ENSPNYG00000024076	rpusd1	91	67.331	Pundamilia_nyererei
ENSSSCG00000008000	RPUSD1	98	63.922	ENSPNAG00000013806	rpusd1	100	57.282	Pygocentrus_nattereri
ENSSSCG00000008000	RPUSD1	98	87.402	ENSRNOG00000023639	Rpusd1	100	83.333	Rattus_norvegicus
ENSSSCG00000008000	RPUSD1	98	89.370	ENSRBIG00000030238	RPUSD1	100	86.218	Rhinopithecus_bieti
ENSSSCG00000008000	RPUSD1	98	89.370	ENSRROG00000036663	RPUSD1	100	86.218	Rhinopithecus_roxellana
ENSSSCG00000008000	RPUSD1	98	88.976	ENSSBOG00000033063	RPUSD1	100	83.333	Saimiri_boliviensis_boliviensis
ENSSSCG00000008000	RPUSD1	98	75.197	ENSSHAG00000013500	RPUSD1	100	66.987	Sarcophilus_harrisii
ENSSSCG00000008000	RPUSD1	98	69.141	ENSSFOG00015014394	rpusd1	99	62.783	Scleropages_formosus
ENSSSCG00000008000	RPUSD1	98	65.748	ENSSMAG00000008045	rpusd1	91	57.705	Scophthalmus_maximus
ENSSSCG00000008000	RPUSD1	98	67.717	ENSSDUG00000001829	rpusd1	95	59.344	Seriola_dumerili
ENSSSCG00000008000	RPUSD1	98	67.717	ENSSLDG00000020853	rpusd1	95	59.344	Seriola_lalandi_dorsalis
ENSSSCG00000008000	RPUSD1	64	89.222	ENSSARG00000011187	-	100	89.222	Sorex_araneus
ENSSSCG00000008000	RPUSD1	55	65.734	ENSSPUG00000005119	-	100	52.913	Sphenodon_punctatus
ENSSSCG00000008000	RPUSD1	98	66.929	ENSSPAG00000012708	rpusd1	98	58.689	Stegastes_partitus
ENSSSCG00000008000	RPUSD1	98	73.228	ENSTGUG00000015375	RPUSD1	100	72.941	Taeniopygia_guttata
ENSSSCG00000008000	RPUSD1	98	64.567	ENSTRUG00000003041	rpusd1	98	56.958	Takifugu_rubripes
ENSSSCG00000008000	RPUSD1	98	63.780	ENSTNIG00000002660	rpusd1	93	63.780	Tetraodon_nigroviridis
ENSSSCG00000008000	RPUSD1	99	92.996	ENSTTRG00000010167	RPUSD1	100	91.987	Tursiops_truncatus
ENSSSCG00000008000	RPUSD1	99	85.992	ENSUAMG00000012736	RPUSD1	100	83.333	Ursus_americanus
ENSSSCG00000008000	RPUSD1	99	85.992	ENSUMAG00000021174	RPUSD1	100	83.333	Ursus_maritimus
ENSSSCG00000008000	RPUSD1	99	85.214	ENSVVUG00000012357	RPUSD1	100	81.731	Vulpes_vulpes
ENSSSCG00000008000	RPUSD1	94	69.672	ENSXETG00000007184	rpusd1	100	60.897	Xenopus_tropicalis
ENSSSCG00000008000	RPUSD1	98	64.567	ENSXCOG00000017930	rpusd1	98	56.721	Xiphophorus_couchianus
ENSSSCG00000008000	RPUSD1	98	65.354	ENSXMAG00000024084	rpusd1	98	57.705	Xiphophorus_maculatus