EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000008048 (Gene tree)
Gene ID: 100737559
Gene Symbol: RNPS1
Alias: -
Full Name: RNA binding protein with serine rich domain 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 19303 bases
Position: chr3:39739077-39758379
Accession: 100737559
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000008596	RRM_1	PF00076.22	1e-17	1	1
ENSSSCP00000039371	RRM_1	PF00076.22	1e-17	1	1
ENSSSCP00000041982	RRM_1	PF00076.22	1e-17	1	1
ENSSSCP00000055378	RRM_1	PF00076.22	1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000041803	RNPS1-202	5014	XM_003481098	ENSSSCP00000041982	305 (aa)	XP_003481146	F1RFA3
ENSSSCT00000043814	RNPS1-203	3003	-	ENSSSCP00000055378	305 (aa)	-	F1RFA3
ENSSSCT00000048376	RNPS1-201	3495	-	ENSSSCP00000039371	305 (aa)	-	F1RFA3
ENSSSCT00000008820	RNPS1-204	2315	XM_013987838	ENSSSCP00000008596	305 (aa)	XP_013843292	F1RFA3

Gene Model

Click here to download ENSSSCG00000008048's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03013	RNA transport	KEGG
ssc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000008048's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000008048	RNPS1	100	99.672	ENSG00000205937	RNPS1	100	100.000	Homo_sapiens
ENSSSCG00000008048	RNPS1	78	68.619	ENSAPOG00000014649	-	84	69.583	Acanthochromis_polyacanthus
ENSSSCG00000008048	RNPS1	100	99.672	ENSAMEG00000017861	RNPS1	100	99.672	Ailuropoda_melanoleuca
ENSSSCG00000008048	RNPS1	70	65.581	ENSACIG00000014367	-	76	66.977	Amphilophus_citrinellus
ENSSSCG00000008048	RNPS1	78	72.385	ENSATEG00000024267	RNPS1	84	72.917	Anabas_testudineus
ENSSSCG00000008048	RNPS1	86	66.160	ENSAPLG00000006231	RNPS1	65	93.548	Anas_platyrhynchos
ENSSSCG00000008048	RNPS1	76	91.416	ENSACAG00000004088	RNPS1	94	91.416	Anolis_carolinensis
ENSSSCG00000008048	RNPS1	100	99.344	ENSANAG00000028802	RNPS1	100	99.344	Aotus_nancymaae
ENSSSCG00000008048	RNPS1	79	92.149	ENSANAG00000029802	-	90	92.469	Aotus_nancymaae
ENSSSCG00000008048	RNPS1	86	60.837	ENSACLG00000021537	-	96	67.925	Astatotilapia_calliptera
ENSSSCG00000008048	RNPS1	79	75.833	ENSAMXG00000006330	-	81	66.176	Astyanax_mexicanus
ENSSSCG00000008048	RNPS1	100	99.016	ENSBTAG00000009969	RNPS1	100	99.016	Bos_taurus
ENSSSCG00000008048	RNPS1	100	99.672	ENSCJAG00000014969	RNPS1	100	99.672	Callithrix_jacchus
ENSSSCG00000008048	RNPS1	100	99.672	ENSCAFG00000019397	RNPS1	100	99.672	Canis_familiaris
ENSSSCG00000008048	RNPS1	100	99.672	ENSCAFG00020026159	RNPS1	100	99.672	Canis_lupus_dingo
ENSSSCG00000008048	RNPS1	67	99.015	ENSCHIG00000014621	-	69	98.529	Capra_hircus
ENSSSCG00000008048	RNPS1	79	95.041	ENSTSYG00000031848	-	98	95.000	Carlito_syrichta
ENSSSCG00000008048	RNPS1	100	99.672	ENSTSYG00000001629	RNPS1	100	99.672	Carlito_syrichta
ENSSSCG00000008048	RNPS1	100	99.344	ENSCAPG00000007731	RNPS1	100	99.344	Cavia_aperea
ENSSSCG00000008048	RNPS1	100	99.344	ENSCPOG00000002066	RNPS1	100	99.344	Cavia_porcellus
ENSSSCG00000008048	RNPS1	100	99.344	ENSCCAG00000034480	RNPS1	100	99.344	Cebus_capucinus
ENSSSCG00000008048	RNPS1	95	89.691	ENSCATG00000042361	-	87	93.511	Cercocebus_atys
ENSSSCG00000008048	RNPS1	100	99.672	ENSCATG00000013756	RNPS1	100	99.672	Cercocebus_atys
ENSSSCG00000008048	RNPS1	100	99.344	ENSCLAG00000015546	RNPS1	100	99.344	Chinchilla_lanigera
ENSSSCG00000008048	RNPS1	92	96.797	ENSCSAG00000005219	-	94	96.797	Chlorocebus_sabaeus
ENSSSCG00000008048	RNPS1	100	98.033	ENSCHOG00000004866	RNPS1	100	98.033	Choloepus_hoffmanni
ENSSSCG00000008048	RNPS1	100	99.672	ENSCANG00000041307	RNPS1	100	99.672	Colobus_angolensis_palliatus
ENSSSCG00000008048	RNPS1	67	85.507	ENSCANG00000030189	-	67	79.208	Colobus_angolensis_palliatus
ENSSSCG00000008048	RNPS1	100	99.672	ENSCGRG00001020431	Rnps1	100	99.672	Cricetulus_griseus_chok1gshd
ENSSSCG00000008048	RNPS1	100	99.016	ENSCGRG00000014021	Rnps1	80	99.587	Cricetulus_griseus_crigri
ENSSSCG00000008048	RNPS1	85	68.321	ENSCSEG00000000402	RNPS1	85	68.321	Cynoglossus_semilaevis
ENSSSCG00000008048	RNPS1	78	64.017	ENSDARG00000116743	rnps1	84	70.000	Danio_rerio
ENSSSCG00000008048	RNPS1	78	64.017	ENSDARG00000100188	RNPS1	84	70.000	Danio_rerio
ENSSSCG00000008048	RNPS1	100	99.672	ENSDNOG00000016081	RNPS1	100	99.672	Dasypus_novemcinctus
ENSSSCG00000008048	RNPS1	65	72.362	ENSDNOG00000038751	-	99	72.222	Dasypus_novemcinctus
ENSSSCG00000008048	RNPS1	100	99.016	ENSDORG00000001755	Rnps1	100	99.016	Dipodomys_ordii
ENSSSCG00000008048	RNPS1	100	99.672	ENSEASG00005004862	RNPS1	100	99.672	Equus_asinus_asinus
ENSSSCG00000008048	RNPS1	81	93.145	ENSECAG00000023288	RNPS1	83	97.835	Equus_caballus
ENSSSCG00000008048	RNPS1	100	80.984	ENSEEUG00000005933	RNPS1	100	80.984	Erinaceus_europaeus
ENSSSCG00000008048	RNPS1	100	99.344	ENSFCAG00000007690	RNPS1	100	99.344	Felis_catus
ENSSSCG00000008048	RNPS1	92	95.775	ENSFALG00000004868	RNPS1	100	95.775	Ficedula_albicollis
ENSSSCG00000008048	RNPS1	100	99.016	ENSFDAG00000003386	RNPS1	100	99.016	Fukomys_damarensis
ENSSSCG00000008048	RNPS1	70	70.233	ENSFHEG00000011705	RNPS1	75	70.833	Fundulus_heteroclitus
ENSSSCG00000008048	RNPS1	92	95.760	ENSGALG00000009288	RNPS1	99	95.760	Gallus_gallus
ENSSSCG00000008048	RNPS1	86	93.536	ENSGAGG00000010452	RNPS1	86	93.536	Gopherus_agassizii
ENSSSCG00000008048	RNPS1	68	97.573	ENSGGOG00000026421	-	79	97.573	Gorilla_gorilla
ENSSSCG00000008048	RNPS1	100	99.672	ENSGGOG00000014275	RNPS1	100	99.672	Gorilla_gorilla
ENSSSCG00000008048	RNPS1	79	64.315	ENSHBUG00000017337	-	84	71.784	Haplochromis_burtoni
ENSSSCG00000008048	RNPS1	79	94.737	ENSHGLG00000006292	-	97	94.737	Heterocephalus_glaber_female
ENSSSCG00000008048	RNPS1	100	99.672	ENSHGLG00000013957	RNPS1	100	99.672	Heterocephalus_glaber_female
ENSSSCG00000008048	RNPS1	85	93.822	ENSHGLG00100015267	-	79	95.023	Heterocephalus_glaber_male
ENSSSCG00000008048	RNPS1	100	99.672	ENSHGLG00100003539	RNPS1	100	99.672	Heterocephalus_glaber_male
ENSSSCG00000008048	RNPS1	80	82.857	ENSHGLG00100017879	-	80	69.835	Heterocephalus_glaber_male
ENSSSCG00000008048	RNPS1	67	92.157	ENSHGLG00100011610	-	83	92.157	Heterocephalus_glaber_male
ENSSSCG00000008048	RNPS1	86	76.806	ENSSTOG00000013200	RNPS1	100	87.869	Ictidomys_tridecemlineatus
ENSSSCG00000008048	RNPS1	100	99.344	ENSJJAG00000015576	-	100	99.344	Jaculus_jaculus
ENSSSCG00000008048	RNPS1	78	88.285	ENSLACG00000007112	RNPS1	84	88.285	Latimeria_chalumnae
ENSSSCG00000008048	RNPS1	78	67.782	ENSLOCG00000001758	RNPS1	84	83.682	Lepisosteus_oculatus
ENSSSCG00000008048	RNPS1	100	99.672	ENSMFAG00000042142	RNPS1	100	99.672	Macaca_fascicularis
ENSSSCG00000008048	RNPS1	66	99.505	ENSMMUG00000019238	-	80	100.000	Macaca_mulatta
ENSSSCG00000008048	RNPS1	88	94.403	ENSMMUG00000041726	-	92	94.297	Macaca_mulatta
ENSSSCG00000008048	RNPS1	88	94.776	ENSMNEG00000024827	-	92	94.677	Macaca_nemestrina
ENSSSCG00000008048	RNPS1	100	99.672	ENSMLEG00000036928	RNPS1	100	99.672	Mandrillus_leucophaeus
ENSSSCG00000008048	RNPS1	68	92.718	ENSMLEG00000040232	-	80	92.718	Mandrillus_leucophaeus
ENSSSCG00000008048	RNPS1	78	70.293	ENSMAMG00000021609	-	84	70.833	Mastacembelus_armatus
ENSSSCG00000008048	RNPS1	80	73.770	ENSMAMG00000021148	-	88	67.816	Mastacembelus_armatus
ENSSSCG00000008048	RNPS1	79	93.776	ENSMGAG00000010042	RNPS1	98	94.915	Meleagris_gallopavo
ENSSSCG00000008048	RNPS1	100	99.016	ENSMICG00000031543	RNPS1	100	99.016	Microcebus_murinus
ENSSSCG00000008048	RNPS1	100	99.672	ENSMOCG00000003429	Rnps1	100	99.672	Microtus_ochrogaster
ENSSSCG00000008048	RNPS1	70	66.977	ENSMMOG00000010863	RNPS1	75	65.581	Mola_mola
ENSSSCG00000008048	RNPS1	100	97.386	ENSMODG00000015891	RNPS1	100	97.386	Monodelphis_domestica
ENSSSCG00000008048	RNPS1	100	99.672	ENSMUSG00000034681	Rnps1	100	99.672	Mus_musculus
ENSSSCG00000008048	RNPS1	100	99.016	MGP_PahariEiJ_G0023498	Rnps1	100	99.016	Mus_pahari
ENSSSCG00000008048	RNPS1	100	99.672	MGP_SPRETEiJ_G0022092	Rnps1	100	99.672	Mus_spretus
ENSSSCG00000008048	RNPS1	100	99.672	ENSMLUG00000016808	RNPS1	100	99.672	Myotis_lucifugus
ENSSSCG00000008048	RNPS1	100	99.344	ENSNGAG00000023702	Rnps1	100	99.344	Nannospalax_galili
ENSSSCG00000008048	RNPS1	81	63.158	ENSNBRG00000014540	-	92	68.359	Neolamprologus_brichardi
ENSSSCG00000008048	RNPS1	70	67.442	ENSNBRG00000023437	RNPS1	75	66.047	Neolamprologus_brichardi
ENSSSCG00000008048	RNPS1	89	97.794	ENSNLEG00000009243	RNPS1	100	97.794	Nomascus_leucogenys
ENSSSCG00000008048	RNPS1	100	96.393	ENSMEUG00000008882	RNPS1	100	96.393	Notamacropus_eugenii
ENSSSCG00000008048	RNPS1	100	96.393	ENSOPRG00000016422	RNPS1	100	96.393	Ochotona_princeps
ENSSSCG00000008048	RNPS1	52	66.250	ENSODEG00000017258	-	51	64.516	Octodon_degus
ENSSSCG00000008048	RNPS1	54	64.634	ENSODEG00000002513	-	54	64.516	Octodon_degus
ENSSSCG00000008048	RNPS1	79	69.710	ENSORLG00015011183	RNPS1	74	70.954	Oryzias_latipes_hsok
ENSSSCG00000008048	RNPS1	95	98.966	ENSOARG00000018056	-	81	98.966	Ovis_aries
ENSSSCG00000008048	RNPS1	89	94.444	ENSPPAG00000011845	RNPS1	91	93.004	Pan_paniscus
ENSSSCG00000008048	RNPS1	79	93.802	ENSPPAG00000037836	-	99	93.802	Pan_paniscus
ENSSSCG00000008048	RNPS1	100	99.344	ENSPPRG00000011255	RNPS1	100	99.344	Panthera_pardus
ENSSSCG00000008048	RNPS1	63	97.500	ENSPTIG00000015643	RNPS1	85	100.000	Panthera_tigris_altaica
ENSSSCG00000008048	RNPS1	78	93.305	ENSPTRG00000046326	-	91	93.305	Pan_troglodytes
ENSSSCG00000008048	RNPS1	100	99.344	ENSPTRG00000031310	RNPS1	100	99.344	Pan_troglodytes
ENSSSCG00000008048	RNPS1	100	99.672	ENSPANG00000015748	RNPS1	100	99.672	Papio_anubis
ENSSSCG00000008048	RNPS1	75	67.391	ENSPANG00000033576	-	78	67.391	Papio_anubis
ENSSSCG00000008048	RNPS1	78	80.417	ENSPKIG00000023465	RNPS1	84	80.417	Paramormyrops_kingsleyae
ENSSSCG00000008048	RNPS1	86	93.156	ENSPSIG00000006048	RNPS1	86	93.156	Pelodiscus_sinensis
ENSSSCG00000008048	RNPS1	100	99.672	ENSPEMG00000012797	Rnps1	100	99.672	Peromyscus_maniculatus_bairdii
ENSSSCG00000008048	RNPS1	100	97.705	ENSPCIG00000025012	RNPS1	100	97.705	Phascolarctos_cinereus
ENSSSCG00000008048	RNPS1	61	88.742	ENSPCIG00000016114	-	80	98.387	Phascolarctos_cinereus
ENSSSCG00000008048	RNPS1	100	97.377	ENSPCAG00000004514	RNPS1	100	97.377	Procavia_capensis
ENSSSCG00000008048	RNPS1	100	99.344	ENSPCOG00000005478	RNPS1	100	99.344	Propithecus_coquereli
ENSSSCG00000008048	RNPS1	100	99.344	ENSPVAG00000005105	RNPS1	100	99.344	Pteropus_vampyrus
ENSSSCG00000008048	RNPS1	78	75.732	ENSPNAG00000025479	RNPS1	84	69.038	Pygocentrus_nattereri
ENSSSCG00000008048	RNPS1	100	99.344	ENSRNOG00000008703	Rnps1	100	99.344	Rattus_norvegicus
ENSSSCG00000008048	RNPS1	92	98.929	ENSRBIG00000038965	-	99	98.929	Rhinopithecus_bieti
ENSSSCG00000008048	RNPS1	89	99.632	ENSRROG00000041252	RNPS1	97	96.218	Rhinopithecus_roxellana
ENSSSCG00000008048	RNPS1	100	99.672	ENSSBOG00000027927	RNPS1	100	99.672	Saimiri_boliviensis_boliviensis
ENSSSCG00000008048	RNPS1	100	97.705	ENSSHAG00000016951	RNPS1	100	97.705	Sarcophilus_harrisii
ENSSSCG00000008048	RNPS1	79	76.860	ENSSFOG00015019341	-	75	69.710	Scleropages_formosus
ENSSSCG00000008048	RNPS1	78	73.750	ENSSFOG00015022746	RNPS1	87	67.782	Scleropages_formosus
ENSSSCG00000008048	RNPS1	78	71.130	ENSSDUG00000011453	RNPS1	84	71.667	Seriola_dumerili
ENSSSCG00000008048	RNPS1	75	65.652	ENSSLDG00000021341	RNPS1	76	68.137	Seriola_lalandi_dorsalis
ENSSSCG00000008048	RNPS1	79	96.694	ENSSARG00000001577	RNPS1	86	96.694	Sorex_araneus
ENSSSCG00000008048	RNPS1	86	93.916	ENSSPUG00000016588	RNPS1	86	93.916	Sphenodon_punctatus
ENSSSCG00000008048	RNPS1	79	95.417	ENSTGUG00000003237	RNPS1	85	95.417	Taeniopygia_guttata
ENSSSCG00000008048	RNPS1	78	72.083	ENSTRUG00000008602	RNPS1	84	72.083	Takifugu_rubripes
ENSSSCG00000008048	RNPS1	79	72.428	ENSTNIG00000009753	RNPS1	84	72.428	Tetraodon_nigroviridis
ENSSSCG00000008048	RNPS1	89	99.632	ENSTBEG00000009098	RNPS1	100	99.632	Tupaia_belangeri
ENSSSCG00000008048	RNPS1	100	99.672	ENSTTRG00000008220	RNPS1	100	99.672	Tursiops_truncatus
ENSSSCG00000008048	RNPS1	90	99.634	ENSUAMG00000004462	RNPS1	100	99.634	Ursus_americanus
ENSSSCG00000008048	RNPS1	100	99.672	ENSUMAG00000022327	RNPS1	100	99.672	Ursus_maritimus
ENSSSCG00000008048	RNPS1	100	99.672	ENSVVUG00000009244	RNPS1	100	99.672	Vulpes_vulpes
ENSSSCG00000008048	RNPS1	78	70.293	ENSXETG00000024439	rnps1	73	72.566	Xenopus_tropicalis