EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000008127 (Gene tree)
Gene ID: 100739577
Gene Symbol: SNRNP200
Alias: ASCC3L1|BRR2|HELIC2|KIAA0788|RP33|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 35307 bases
Position: chr3:46929051-46964357
Accession: 100739577
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000008677	ResIII	PF04851.15	8.3e-26	1	2
ENSSSCP00000008677	ResIII	PF04851.15	8.3e-26	2	2
ENSSSCP00000051899	ResIII	PF04851.15	1e-25	1	2
ENSSSCP00000051899	ResIII	PF04851.15	1e-25	2	2
ENSSSCP00000008677	DEAD	PF00270.29	3.9e-52	1	2
ENSSSCP00000008677	DEAD	PF00270.29	3.9e-52	2	2
ENSSSCP00000051899	DEAD	PF00270.29	5.9e-52	1	2
ENSSSCP00000051899	DEAD	PF00270.29	5.9e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000008903	SNRNP200-202	6803	-	ENSSSCP00000008677	1883 (aa)	-	F1SU44
ENSSSCT00000051137	SNRNP200-201	10843	XM_021087098	ENSSSCP00000051899	2136 (aa)	XP_020942757	K9J4V0

Gene Model

Click here to download ENSSSCG00000008127's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000008127's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000008127	SNRNP200	73	33.807	ENSSSCG00000006912	HFM1	58	33.807
ENSSSCG00000008127	SNRNP200	87	44.902	ENSSSCG00000004358	ASCC3	88	44.626

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000008127	SNRNP200	100	99.719	ENSG00000144028	SNRNP200	100	99.719	Homo_sapiens
ENSSSCG00000008127	SNRNP200	99	90.982	ENSAPOG00000010223	snrnp200	99	90.871	Acanthochromis_polyacanthus
ENSSSCG00000008127	SNRNP200	100	99.766	ENSAMEG00000008996	SNRNP200	100	99.766	Ailuropoda_melanoleuca
ENSSSCG00000008127	SNRNP200	99	90.058	ENSACIG00000001764	snrnp200	99	90.058	Amphilophus_citrinellus
ENSSSCG00000008127	SNRNP200	99	90.888	ENSAOCG00000024593	snrnp200	100	90.150	Amphiprion_ocellaris
ENSSSCG00000008127	SNRNP200	99	90.203	ENSAPEG00000012554	snrnp200	100	90.203	Amphiprion_percula
ENSSSCG00000008127	SNRNP200	99	90.747	ENSATEG00000022522	snrnp200	99	90.637	Anabas_testudineus
ENSSSCG00000008127	SNRNP200	99	97.643	ENSAPLG00000004313	SNRNP200	100	97.643	Anas_platyrhynchos
ENSSSCG00000008127	SNRNP200	99	97.497	ENSACAG00000000434	SNRNP200	100	97.497	Anolis_carolinensis
ENSSSCG00000008127	SNRNP200	100	95.149	ENSANAG00000036625	SNRNP200	100	95.569	Aotus_nancymaae
ENSSSCG00000008127	SNRNP200	99	90.606	ENSACLG00000011188	snrnp200	99	90.496	Astatotilapia_calliptera
ENSSSCG00000008127	SNRNP200	99	90.700	ENSAMXG00000005684	snrnp200	99	90.590	Astyanax_mexicanus
ENSSSCG00000008127	SNRNP200	100	99.204	ENSBTAG00000000848	SNRNP200	100	99.204	Bos_taurus
ENSSSCG00000008127	SNRNP200	100	99.672	ENSCJAG00000007514	SNRNP200	100	99.672	Callithrix_jacchus
ENSSSCG00000008127	SNRNP200	100	98.973	ENSCAFG00020019979	SNRNP200	100	99.767	Canis_lupus_dingo
ENSSSCG00000008127	SNRNP200	100	99.391	ENSCHIG00000020611	SNRNP200	100	99.391	Capra_hircus
ENSSSCG00000008127	SNRNP200	100	99.719	ENSTSYG00000010467	SNRNP200	100	99.719	Carlito_syrichta
ENSSSCG00000008127	SNRNP200	99	99.248	ENSCAPG00000017234	SNRNP200	99	99.248	Cavia_aperea
ENSSSCG00000008127	SNRNP200	100	99.532	ENSCPOG00000006776	SNRNP200	100	99.532	Cavia_porcellus
ENSSSCG00000008127	SNRNP200	100	99.672	ENSCCAG00000033962	SNRNP200	100	99.672	Cebus_capucinus
ENSSSCG00000008127	SNRNP200	100	99.719	ENSCATG00000015790	SNRNP200	100	99.719	Cercocebus_atys
ENSSSCG00000008127	SNRNP200	100	99.391	ENSCLAG00000004116	SNRNP200	100	99.391	Chinchilla_lanigera
ENSSSCG00000008127	SNRNP200	100	99.672	ENSCSAG00000017369	SNRNP200	100	99.672	Chlorocebus_sabaeus
ENSSSCG00000008127	SNRNP200	75	100.000	ENSCHOG00000012981	-	59	99.213	Choloepus_hoffmanni
ENSSSCG00000008127	SNRNP200	100	97.662	ENSCPBG00000022571	SNRNP200	100	97.662	Chrysemys_picta_bellii
ENSSSCG00000008127	SNRNP200	99	76.640	ENSCING00000005082	-	99	76.740	Ciona_intestinalis
ENSSSCG00000008127	SNRNP200	95	99.554	ENSCANG00000033932	SNRNP200	100	99.652	Colobus_angolensis_palliatus
ENSSSCG00000008127	SNRNP200	100	99.579	ENSCGRG00001022610	Snrnp200	100	99.579	Cricetulus_griseus_chok1gshd
ENSSSCG00000008127	SNRNP200	100	99.018	ENSCGRG00000016472	Snrnp200	100	99.018	Cricetulus_griseus_crigri
ENSSSCG00000008127	SNRNP200	100	89.981	ENSCSEG00000016399	snrnp200	100	89.981	Cynoglossus_semilaevis
ENSSSCG00000008127	SNRNP200	100	85.768	ENSCVAG00000017631	snrnp200	99	85.768	Cyprinodon_variegatus
ENSSSCG00000008127	SNRNP200	100	90.356	ENSDARG00000077536	snrnp200	99	90.356	Danio_rerio
ENSSSCG00000008127	SNRNP200	100	98.268	ENSDNOG00000011227	SNRNP200	100	98.268	Dasypus_novemcinctus
ENSSSCG00000008127	SNRNP200	100	96.961	ENSDORG00000005861	Snrnp200	100	96.961	Dipodomys_ordii
ENSSSCG00000008127	SNRNP200	100	74.348	FBgn0263599	l(3)72Ab	99	74.255	Drosophila_melanogaster
ENSSSCG00000008127	SNRNP200	95	99.569	ENSETEG00000000162	SNRNP200	74	99.569	Echinops_telfairi
ENSSSCG00000008127	SNRNP200	83	81.256	ENSEBUG00000016524	snrnp200	95	81.256	Eptatretus_burgeri
ENSSSCG00000008127	SNRNP200	100	98.648	ENSEASG00005001884	SNRNP200	100	98.648	Equus_asinus_asinus
ENSSSCG00000008127	SNRNP200	100	99.766	ENSECAG00000019675	SNRNP200	100	99.766	Equus_caballus
ENSSSCG00000008127	SNRNP200	91	97.895	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSSSCG00000008127	SNRNP200	99	90.935	ENSELUG00000018948	snrnp200	99	90.824	Esox_lucius
ENSSSCG00000008127	SNRNP200	100	99.813	ENSFCAG00000010699	SNRNP200	100	99.813	Felis_catus
ENSSSCG00000008127	SNRNP200	93	92.857	ENSFALG00000001368	-	95	92.857	Ficedula_albicollis
ENSSSCG00000008127	SNRNP200	100	99.438	ENSFDAG00000004683	SNRNP200	100	99.438	Fukomys_damarensis
ENSSSCG00000008127	SNRNP200	100	87.875	ENSFHEG00000003786	snrnp200	99	87.875	Fundulus_heteroclitus
ENSSSCG00000008127	SNRNP200	100	89.813	ENSGMOG00000004881	snrnp200	99	89.766	Gadus_morhua
ENSSSCG00000008127	SNRNP200	100	88.109	ENSGAFG00000010807	snrnp200	99	88.109	Gambusia_affinis
ENSSSCG00000008127	SNRNP200	100	90.098	ENSGACG00000011474	snrnp200	99	90.005	Gasterosteus_aculeatus
ENSSSCG00000008127	SNRNP200	95	97.584	ENSGAGG00000016069	SNRNP200	99	97.584	Gopherus_agassizii
ENSSSCG00000008127	SNRNP200	100	99.719	ENSGGOG00000005174	SNRNP200	100	99.719	Gorilla_gorilla
ENSSSCG00000008127	SNRNP200	99	87.846	ENSHBUG00000011322	snrnp200	99	87.880	Haplochromis_burtoni
ENSSSCG00000008127	SNRNP200	100	99.532	ENSHGLG00000006654	SNRNP200	100	99.532	Heterocephalus_glaber_female
ENSSSCG00000008127	SNRNP200	100	99.532	ENSHGLG00100018594	SNRNP200	100	99.532	Heterocephalus_glaber_male
ENSSSCG00000008127	SNRNP200	100	99.672	ENSSTOG00000016351	SNRNP200	100	99.672	Ictidomys_tridecemlineatus
ENSSSCG00000008127	SNRNP200	100	99.485	ENSJJAG00000023659	Snrnp200	100	99.485	Jaculus_jaculus
ENSSSCG00000008127	SNRNP200	100	87.681	ENSKMAG00000003665	snrnp200	99	87.681	Kryptolebias_marmoratus
ENSSSCG00000008127	SNRNP200	100	90.356	ENSLBEG00000021585	snrnp200	99	90.356	Labrus_bergylta
ENSSSCG00000008127	SNRNP200	82	94.722	ENSLACG00000000226	SNRNP200	99	95.350	Latimeria_chalumnae
ENSSSCG00000008127	SNRNP200	100	92.228	ENSLOCG00000015198	snrnp200	99	92.228	Lepisosteus_oculatus
ENSSSCG00000008127	SNRNP200	100	99.391	ENSLAFG00000015626	SNRNP200	100	99.391	Loxodonta_africana
ENSSSCG00000008127	SNRNP200	100	99.672	ENSMFAG00000040174	SNRNP200	100	99.672	Macaca_fascicularis
ENSSSCG00000008127	SNRNP200	100	99.672	ENSMMUG00000023261	SNRNP200	100	99.672	Macaca_mulatta
ENSSSCG00000008127	SNRNP200	100	99.625	ENSMNEG00000032398	SNRNP200	100	99.625	Macaca_nemestrina
ENSSSCG00000008127	SNRNP200	100	99.719	ENSMLEG00000019083	SNRNP200	100	99.719	Mandrillus_leucophaeus
ENSSSCG00000008127	SNRNP200	100	90.360	ENSMAMG00000007851	snrnp200	99	90.314	Mastacembelus_armatus
ENSSSCG00000008127	SNRNP200	99	87.846	ENSMZEG00005010787	snrnp200	99	87.880	Maylandia_zebra
ENSSSCG00000008127	SNRNP200	98	97.191	ENSMGAG00000001831	SNRNP200	100	97.194	Meleagris_gallopavo
ENSSSCG00000008127	SNRNP200	100	99.625	ENSMAUG00000011825	Snrnp200	100	99.625	Mesocricetus_auratus
ENSSSCG00000008127	SNRNP200	100	99.672	ENSMICG00000004710	SNRNP200	100	99.672	Microcebus_murinus
ENSSSCG00000008127	SNRNP200	100	97.051	ENSMOCG00000011814	Snrnp200	100	97.051	Microtus_ochrogaster
ENSSSCG00000008127	SNRNP200	99	89.103	ENSMMOG00000014167	snrnp200	99	88.998	Mola_mola
ENSSSCG00000008127	SNRNP200	100	98.876	ENSMODG00000008475	SNRNP200	100	98.876	Monodelphis_domestica
ENSSSCG00000008127	SNRNP200	99	90.935	ENSMALG00000001973	snrnp200	99	90.824	Monopterus_albus
ENSSSCG00000008127	SNRNP200	100	99.438	MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.438	Mus_caroli
ENSSSCG00000008127	SNRNP200	100	99.485	ENSMUSG00000003660	Snrnp200	100	99.485	Mus_musculus
ENSSSCG00000008127	SNRNP200	100	99.532	MGP_PahariEiJ_G0025695	Snrnp200	100	99.532	Mus_pahari
ENSSSCG00000008127	SNRNP200	100	99.485	MGP_SPRETEiJ_G0025170	Snrnp200	100	99.485	Mus_spretus
ENSSSCG00000008127	SNRNP200	100	99.719	ENSMPUG00000008949	SNRNP200	100	99.719	Mustela_putorius_furo
ENSSSCG00000008127	SNRNP200	100	95.459	ENSMLUG00000027511	-	100	95.459	Myotis_lucifugus
ENSSSCG00000008127	SNRNP200	100	99.065	ENSMLUG00000010493	SNRNP200	100	99.065	Myotis_lucifugus
ENSSSCG00000008127	SNRNP200	100	99.719	ENSNGAG00000021993	Snrnp200	100	99.719	Nannospalax_galili
ENSSSCG00000008127	SNRNP200	92	90.388	ENSNBRG00000017960	snrnp200	98	90.388	Neolamprologus_brichardi
ENSSSCG00000008127	SNRNP200	100	95.072	ENSNLEG00000000025	SNRNP200	100	95.441	Nomascus_leucogenys
ENSSSCG00000008127	SNRNP200	100	98.611	ENSMEUG00000010532	SNRNP200	79	98.611	Notamacropus_eugenii
ENSSSCG00000008127	SNRNP200	98	98.054	ENSOPRG00000015464	SNRNP200	100	95.787	Ochotona_princeps
ENSSSCG00000008127	SNRNP200	100	99.391	ENSODEG00000008366	SNRNP200	100	99.391	Octodon_degus
ENSSSCG00000008127	SNRNP200	99	90.606	ENSONIG00000010714	snrnp200	99	90.496	Oreochromis_niloticus
ENSSSCG00000008127	SNRNP200	100	99.579	ENSOCUG00000009864	SNRNP200	100	99.579	Oryctolagus_cuniculus
ENSSSCG00000008127	SNRNP200	100	90.356	ENSORLG00000012286	snrnp200	100	90.356	Oryzias_latipes
ENSSSCG00000008127	SNRNP200	100	90.403	ENSORLG00020004648	snrnp200	100	90.403	Oryzias_latipes_hni
ENSSSCG00000008127	SNRNP200	100	90.356	ENSORLG00015019114	snrnp200	100	90.391	Oryzias_latipes_hsok
ENSSSCG00000008127	SNRNP200	99	90.559	ENSOMEG00000011834	snrnp200	99	90.449	Oryzias_melastigma
ENSSSCG00000008127	SNRNP200	100	99.719	ENSOGAG00000006879	SNRNP200	100	99.719	Otolemur_garnettii
ENSSSCG00000008127	SNRNP200	100	98.362	ENSOARG00000013949	SNRNP200	100	98.362	Ovis_aries
ENSSSCG00000008127	SNRNP200	100	99.719	ENSPPAG00000041559	SNRNP200	100	99.719	Pan_paniscus
ENSSSCG00000008127	SNRNP200	100	99.813	ENSPPRG00000004435	SNRNP200	100	99.813	Panthera_pardus
ENSSSCG00000008127	SNRNP200	100	99.345	ENSPTIG00000006380	SNRNP200	100	99.345	Panthera_tigris_altaica
ENSSSCG00000008127	SNRNP200	100	99.719	ENSPTRG00000012230	SNRNP200	100	99.719	Pan_troglodytes
ENSSSCG00000008127	SNRNP200	100	99.672	ENSPANG00000006017	SNRNP200	100	99.672	Papio_anubis
ENSSSCG00000008127	SNRNP200	100	91.199	ENSPKIG00000014762	snrnp200	99	91.199	Paramormyrops_kingsleyae
ENSSSCG00000008127	SNRNP200	100	96.678	ENSPSIG00000008580	SNRNP200	100	96.678	Pelodiscus_sinensis
ENSSSCG00000008127	SNRNP200	100	98.876	ENSPCIG00000023050	SNRNP200	100	98.876	Phascolarctos_cinereus
ENSSSCG00000008127	SNRNP200	100	90.501	ENSPFOG00000015110	snrnp200	99	90.501	Poecilia_formosa
ENSSSCG00000008127	SNRNP200	99	90.330	ENSPLAG00000006711	snrnp200	99	90.330	Poecilia_latipinna
ENSSSCG00000008127	SNRNP200	99	90.275	ENSPMEG00000021166	snrnp200	99	90.275	Poecilia_mexicana
ENSSSCG00000008127	SNRNP200	100	90.590	ENSPREG00000008875	snrnp200	99	90.590	Poecilia_reticulata
ENSSSCG00000008127	SNRNP200	100	99.719	ENSPPYG00000012068	SNRNP200	100	99.719	Pongo_abelii
ENSSSCG00000008127	SNRNP200	97	98.718	ENSPCAG00000008536	SNRNP200	89	98.718	Procavia_capensis
ENSSSCG00000008127	SNRNP200	100	99.719	ENSPCOG00000024608	SNRNP200	100	99.719	Propithecus_coquereli
ENSSSCG00000008127	SNRNP200	96	100.000	ENSPVAG00000005860	SNRNP200	93	100.000	Pteropus_vampyrus
ENSSSCG00000008127	SNRNP200	99	86.089	ENSPNYG00000017476	snrnp200	99	85.994	Pundamilia_nyererei
ENSSSCG00000008127	SNRNP200	100	86.142	ENSPNAG00000010998	snrnp200	99	86.142	Pygocentrus_nattereri
ENSSSCG00000008127	SNRNP200	100	99.625	ENSRNOG00000012157	Snrnp200	100	99.625	Rattus_norvegicus
ENSSSCG00000008127	SNRNP200	100	99.719	ENSRBIG00000044690	-	100	99.719	Rhinopithecus_bieti
ENSSSCG00000008127	SNRNP200	100	99.719	ENSRROG00000037952	-	100	99.719	Rhinopithecus_roxellana
ENSSSCG00000008127	SNRNP200	100	99.672	ENSSBOG00000035471	SNRNP200	100	99.672	Saimiri_boliviensis_boliviensis
ENSSSCG00000008127	SNRNP200	98	98.920	ENSSHAG00000000758	SNRNP200	100	98.791	Sarcophilus_harrisii
ENSSSCG00000008127	SNRNP200	99	91.639	ENSSFOG00015018826	snrnp200	99	91.526	Scleropages_formosus
ENSSSCG00000008127	SNRNP200	99	90.559	ENSSMAG00000005463	snrnp200	99	90.449	Scophthalmus_maximus
ENSSSCG00000008127	SNRNP200	99	90.841	ENSSDUG00000021410	snrnp200	99	90.730	Seriola_dumerili
ENSSSCG00000008127	SNRNP200	99	90.794	ENSSLDG00000010884	snrnp200	99	90.684	Seriola_lalandi_dorsalis
ENSSSCG00000008127	SNRNP200	95	99.196	ENSSARG00000010728	SNRNP200	96	99.196	Sorex_araneus
ENSSSCG00000008127	SNRNP200	100	97.472	ENSSPUG00000003726	-	100	97.472	Sphenodon_punctatus
ENSSSCG00000008127	SNRNP200	99	90.888	ENSSPAG00000001842	snrnp200	99	90.777	Stegastes_partitus
ENSSSCG00000008127	SNRNP200	99	88.037	ENSTGUG00000014475	-	100	88.037	Taeniopygia_guttata
ENSSSCG00000008127	SNRNP200	99	90.512	ENSTRUG00000001307	snrnp200	99	90.403	Takifugu_rubripes
ENSSSCG00000008127	SNRNP200	100	85.925	ENSTNIG00000004320	snrnp200	100	85.925	Tetraodon_nigroviridis
ENSSSCG00000008127	SNRNP200	82	99.495	ENSTBEG00000003329	-	67	99.495	Tupaia_belangeri
ENSSSCG00000008127	SNRNP200	100	99.438	ENSTTRG00000004983	SNRNP200	100	99.438	Tursiops_truncatus
ENSSSCG00000008127	SNRNP200	82	92.457	ENSUAMG00000008395	-	95	92.829	Ursus_americanus
ENSSSCG00000008127	SNRNP200	100	99.813	ENSUMAG00000012385	SNRNP200	100	99.813	Ursus_maritimus
ENSSSCG00000008127	SNRNP200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSSSCG00000008127	SNRNP200	100	99.580	ENSVVUG00000026247	SNRNP200	100	99.580	Vulpes_vulpes
ENSSSCG00000008127	SNRNP200	100	94.437	ENSXETG00000001243	snrnp200	100	94.437	Xenopus_tropicalis
ENSSSCG00000008127	SNRNP200	99	90.271	ENSXMAG00000002058	snrnp200	99	90.271	Xiphophorus_maculatus