EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000008226 (Gene tree)
Gene ID: 100518066
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 75154 bases
Position: chr3:58669961-58745114
Accession: 100518066
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000008782	RNA_pol_Rpb1_5	PF04998.17	5.2e-68	1	1
ENSSSCP00000008782	RNA_pol_Rpb1_4	PF05000.17	2.8e-25	1	1
ENSSSCP00000008782	RNA_pol_Rpb1_2	PF00623.20	3.1e-70	1	1
ENSSSCP00000008782	RNA_pol_Rpb1_3	PF04983.18	3.4e-36	1	1
ENSSSCP00000008782	RNA_pol_Rpb1_1	PF04997.12	4.4e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000009008	POLR1A-201	4990	XM_005662406	ENSSSCP00000008782	1433 (aa)	XP_005662463	F1SVC3

Gene Model

Click here to download ENSSSCG00000008226's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000008226's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000008226	POLR1A	64	33.333	ENSSSCG00000010327	POLR3A	63	33.333
ENSSSCG00000008226	POLR1A	72	34.545	ENSSSCG00000028278	-	51	34.545

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000008226	POLR1A	99	91.005	ENSG00000068654	POLR1A	86	91.030	Homo_sapiens
ENSSSCG00000008226	POLR1A	83	67.677	ENSAPOG00000017945	polr1a	99	67.677	Acanthochromis_polyacanthus
ENSSSCG00000008226	POLR1A	99	92.551	ENSAMEG00000005807	POLR1A	100	92.725	Ailuropoda_melanoleuca
ENSSSCG00000008226	POLR1A	99	64.101	ENSACIG00000022147	polr1a	84	64.271	Amphilophus_citrinellus
ENSSSCG00000008226	POLR1A	99	67.271	ENSAOCG00000017336	polr1a	82	70.311	Amphiprion_ocellaris
ENSSSCG00000008226	POLR1A	92	74.648	ENSAPEG00000016105	polr1a	80	74.648	Amphiprion_percula
ENSSSCG00000008226	POLR1A	99	67.204	ENSATEG00000016773	polr1a	83	67.341	Anabas_testudineus
ENSSSCG00000008226	POLR1A	82	75.042	ENSAPLG00000013871	POLR1A	80	75.127	Anas_platyrhynchos
ENSSSCG00000008226	POLR1A	99	70.871	ENSACAG00000012141	POLR1A	84	70.871	Anolis_carolinensis
ENSSSCG00000008226	POLR1A	99	89.670	ENSANAG00000033927	POLR1A	83	89.629	Aotus_nancymaae
ENSSSCG00000008226	POLR1A	99	62.911	ENSACLG00000020541	polr1a	82	63.015	Astatotilapia_calliptera
ENSSSCG00000008226	POLR1A	99	93.113	ENSBTAG00000006481	POLR1A	83	93.132	Bos_taurus
ENSSSCG00000008226	POLR1A	99	38.114	WBGene00012999	rpoa-1	83	38.705	Caenorhabditis_elegans
ENSSSCG00000008226	POLR1A	99	89.318	ENSCJAG00000019547	POLR1A	83	89.348	Callithrix_jacchus
ENSSSCG00000008226	POLR1A	99	92.551	ENSCAFG00000007613	POLR1A	83	92.572	Canis_familiaris
ENSSSCG00000008226	POLR1A	99	92.567	ENSCAFG00020014752	POLR1A	95	93.001	Canis_lupus_dingo
ENSSSCG00000008226	POLR1A	99	93.324	ENSCHIG00000018204	POLR1A	91	93.343	Capra_hircus
ENSSSCG00000008226	POLR1A	99	89.045	ENSTSYG00000002761	POLR1A	83	89.286	Carlito_syrichta
ENSSSCG00000008226	POLR1A	96	83.805	ENSCAPG00000010132	POLR1A	82	83.852	Cavia_aperea
ENSSSCG00000008226	POLR1A	99	89.740	ENSCPOG00000012350	POLR1A	83	89.769	Cavia_porcellus
ENSSSCG00000008226	POLR1A	99	89.951	ENSCCAG00000019839	POLR1A	83	89.979	Cebus_capucinus
ENSSSCG00000008226	POLR1A	99	91.778	ENSCATG00000029786	POLR1A	83	91.801	Cercocebus_atys
ENSSSCG00000008226	POLR1A	99	89.902	ENSCLAG00000005187	POLR1A	83	89.930	Chinchilla_lanigera
ENSSSCG00000008226	POLR1A	99	91.637	ENSCSAG00000016251	POLR1A	83	91.661	Chlorocebus_sabaeus
ENSSSCG00000008226	POLR1A	58	93.529	ENSCHOG00000003766	-	84	93.529	Choloepus_hoffmanni
ENSSSCG00000008226	POLR1A	99	77.231	ENSCPBG00000001115	POLR1A	85	77.295	Chrysemys_picta_bellii
ENSSSCG00000008226	POLR1A	99	47.850	ENSCSAVG00000007184	-	85	48.131	Ciona_savignyi
ENSSSCG00000008226	POLR1A	99	88.050	ENSCANG00000031785	POLR1A	83	88.050	Colobus_angolensis_palliatus
ENSSSCG00000008226	POLR1A	99	83.263	ENSCGRG00001006651	Polr1a	83	83.310	Cricetulus_griseus_chok1gshd
ENSSSCG00000008226	POLR1A	51	88.844	ENSCGRG00000010834	Polr1a	72	88.904	Cricetulus_griseus_crigri
ENSSSCG00000008226	POLR1A	99	62.875	ENSCSEG00000020190	polr1a	84	62.875	Cynoglossus_semilaevis
ENSSSCG00000008226	POLR1A	99	66.480	ENSCVAG00000020941	polr1a	82	66.480	Cyprinodon_variegatus
ENSSSCG00000008226	POLR1A	99	68.277	ENSDARG00000098375	polr1a	84	68.366	Danio_rerio
ENSSSCG00000008226	POLR1A	99	85.805	ENSDNOG00000010829	POLR1A	83	85.844	Dasypus_novemcinctus
ENSSSCG00000008226	POLR1A	99	88.330	ENSDORG00000008298	Polr1a	83	88.362	Dipodomys_ordii
ENSSSCG00000008226	POLR1A	95	45.069	FBgn0019938	RpI1	83	44.109	Drosophila_melanogaster
ENSSSCG00000008226	POLR1A	77	87.941	ENSETEG00000000412	-	65	87.941	Echinops_telfairi
ENSSSCG00000008226	POLR1A	87	48.163	ENSEBUG00000005667	-	84	48.403	Eptatretus_burgeri
ENSSSCG00000008226	POLR1A	99	93.324	ENSEASG00005001625	POLR1A	83	93.343	Equus_asinus_asinus
ENSSSCG00000008226	POLR1A	99	93.183	ENSECAG00000036306	-	82	94.295	Equus_caballus
ENSSSCG00000008226	POLR1A	99	93.183	ENSECAG00000030510	-	86	93.203	Equus_caballus
ENSSSCG00000008226	POLR1A	99	93.183	ENSECAG00000010092	POLR1A	82	94.295	Equus_caballus
ENSSSCG00000008226	POLR1A	82	93.617	ENSEEUG00000000676	POLR1A	68	93.333	Erinaceus_europaeus
ENSSSCG00000008226	POLR1A	99	69.333	ENSELUG00000012769	polr1a	82	69.398	Esox_lucius
ENSSSCG00000008226	POLR1A	99	93.394	ENSFCAG00000008966	POLR1A	83	93.413	Felis_catus
ENSSSCG00000008226	POLR1A	98	73.471	ENSFALG00000010082	POLR1A	83	73.546	Ficedula_albicollis
ENSSSCG00000008226	POLR1A	99	89.881	ENSFDAG00000013726	POLR1A	83	89.909	Fukomys_damarensis
ENSSSCG00000008226	POLR1A	97	64.193	ENSFHEG00000005996	polr1a	84	63.452	Fundulus_heteroclitus
ENSSSCG00000008226	POLR1A	99	60.056	ENSGMOG00000002230	polr1a	82	60.406	Gadus_morhua
ENSSSCG00000008226	POLR1A	99	72.465	ENSGALG00000038160	-	91	72.561	Gallus_gallus
ENSSSCG00000008226	POLR1A	99	65.455	ENSGAFG00000015266	polr1a	83	65.433	Gambusia_affinis
ENSSSCG00000008226	POLR1A	99	66.294	ENSGACG00000018791	polr1a	83	66.318	Gasterosteus_aculeatus
ENSSSCG00000008226	POLR1A	87	78.749	ENSGAGG00000004984	-	96	81.795	Gopherus_agassizii
ENSSSCG00000008226	POLR1A	99	90.724	ENSGGOG00000001788	POLR1A	83	90.750	Gorilla_gorilla
ENSSSCG00000008226	POLR1A	87	64.725	ENSHBUG00000020021	polr1a	80	64.725	Haplochromis_burtoni
ENSSSCG00000008226	POLR1A	99	90.232	ENSHGLG00000006334	POLR1A	83	90.259	Heterocephalus_glaber_female
ENSSSCG00000008226	POLR1A	99	89.916	ENSHGLG00100006614	POLR1A	83	89.944	Heterocephalus_glaber_male
ENSSSCG00000008226	POLR1A	99	63.257	ENSHCOG00000003345	polr1a	99	54.909	Hippocampus_comes
ENSSSCG00000008226	POLR1A	99	67.503	ENSIPUG00000013174	polr1a	84	67.573	Ictalurus_punctatus
ENSSSCG00000008226	POLR1A	99	88.826	ENSSTOG00000012580	POLR1A	83	88.858	Ictidomys_tridecemlineatus
ENSSSCG00000008226	POLR1A	99	88.561	ENSJJAG00000013113	Polr1a	83	88.593	Jaculus_jaculus
ENSSSCG00000008226	POLR1A	99	66.923	ENSKMAG00000007399	polr1a	83	66.923	Kryptolebias_marmoratus
ENSSSCG00000008226	POLR1A	93	70.635	ENSLBEG00000015401	polr1a	81	70.635	Labrus_bergylta
ENSSSCG00000008226	POLR1A	64	76.848	ENSLACG00000003218	polr1a	100	76.848	Latimeria_chalumnae
ENSSSCG00000008226	POLR1A	99	72.245	ENSLOCG00000010881	polr1a	83	72.245	Lepisosteus_oculatus
ENSSSCG00000008226	POLR1A	99	90.573	ENSLAFG00000014948	POLR1A	83	90.579	Loxodonta_africana
ENSSSCG00000008226	POLR1A	99	91.637	ENSMFAG00000046097	POLR1A	83	91.661	Macaca_fascicularis
ENSSSCG00000008226	POLR1A	99	91.497	ENSMMUG00000015815	POLR1A	83	91.521	Macaca_mulatta
ENSSSCG00000008226	POLR1A	99	91.637	ENSMNEG00000043313	POLR1A	83	91.661	Macaca_nemestrina
ENSSSCG00000008226	POLR1A	99	91.005	ENSMLEG00000042428	POLR1A	83	91.030	Mandrillus_leucophaeus
ENSSSCG00000008226	POLR1A	99	67.624	ENSMAMG00000016565	polr1a	83	67.715	Mastacembelus_armatus
ENSSSCG00000008226	POLR1A	99	66.690	ENSMZEG00005004915	polr1a	83	66.783	Maylandia_zebra
ENSSSCG00000008226	POLR1A	99	72.632	ENSMGAG00000013111	POLR1A	83	72.727	Meleagris_gallopavo
ENSSSCG00000008226	POLR1A	89	88.941	ENSMAUG00000008497	Polr1a	82	88.975	Mesocricetus_auratus
ENSSSCG00000008226	POLR1A	99	90.801	ENSMICG00000000757	POLR1A	83	90.826	Microcebus_murinus
ENSSSCG00000008226	POLR1A	99	88.655	ENSMOCG00000000122	Polr1a	84	88.757	Microtus_ochrogaster
ENSSSCG00000008226	POLR1A	99	66.013	ENSMMOG00000010216	polr1a	83	66.153	Mola_mola
ENSSSCG00000008226	POLR1A	98	80.169	ENSMODG00000009335	POLR1A	82	80.099	Monodelphis_domestica
ENSSSCG00000008226	POLR1A	99	66.573	ENSMALG00000013363	polr1a	83	66.667	Monopterus_albus
ENSSSCG00000008226	POLR1A	99	87.395	MGP_CAROLIEiJ_G0028494	Polr1a	99	81.720	Mus_caroli
ENSSSCG00000008226	POLR1A	99	87.675	ENSMUSG00000049553	Polr1a	99	81.720	Mus_musculus
ENSSSCG00000008226	POLR1A	99	88.515	MGP_PahariEiJ_G0022230	Polr1a	99	84.229	Mus_pahari
ENSSSCG00000008226	POLR1A	99	87.745	MGP_SPRETEiJ_G0029499	Polr1a	99	81.720	Mus_spretus
ENSSSCG00000008226	POLR1A	99	92.832	ENSMPUG00000009135	POLR1A	83	92.852	Mustela_putorius_furo
ENSSSCG00000008226	POLR1A	99	90.070	ENSMLUG00000015723	POLR1A	83	90.098	Myotis_lucifugus
ENSSSCG00000008226	POLR1A	99	89.573	ENSNGAG00000017907	Polr1a	83	89.602	Nannospalax_galili
ENSSSCG00000008226	POLR1A	99	66.760	ENSNBRG00000000519	polr1a	83	66.923	Neolamprologus_brichardi
ENSSSCG00000008226	POLR1A	99	90.091	ENSNLEG00000002264	POLR1A	82	90.126	Nomascus_leucogenys
ENSSSCG00000008226	POLR1A	81	86.350	ENSMEUG00000011665	-	68	86.350	Notamacropus_eugenii
ENSSSCG00000008226	POLR1A	99	83.134	ENSOPRG00000008269	POLR1A	84	83.181	Ochotona_princeps
ENSSSCG00000008226	POLR1A	99	89.951	ENSODEG00000003542	POLR1A	83	89.979	Octodon_degus
ENSSSCG00000008226	POLR1A	99	67.203	ENSONIG00000015895	polr1a	84	67.294	Oreochromis_niloticus
ENSSSCG00000008226	POLR1A	50	70.782	ENSOANG00000012384	-	99	70.919	Ornithorhynchus_anatinus
ENSSSCG00000008226	POLR1A	99	91.145	ENSOCUG00000010138	POLR1A	83	91.170	Oryctolagus_cuniculus
ENSSSCG00000008226	POLR1A	99	66.364	ENSORLG00000008753	polr1a	83	66.434	Oryzias_latipes
ENSSSCG00000008226	POLR1A	99	64.759	ENSORLG00020020726	polr1a	82	64.759	Oryzias_latipes_hni
ENSSSCG00000008226	POLR1A	94	75.532	ENSORLG00015016071	polr1a	80	75.556	Oryzias_latipes_hsok
ENSSSCG00000008226	POLR1A	99	90.329	ENSOGAG00000004031	POLR1A	83	90.329	Otolemur_garnettii
ENSSSCG00000008226	POLR1A	99	92.842	ENSOARG00000020601	POLR1A	83	92.862	Ovis_aries
ENSSSCG00000008226	POLR1A	99	90.864	ENSPPAG00000042450	POLR1A	83	90.890	Pan_paniscus
ENSSSCG00000008226	POLR1A	99	93.605	ENSPPRG00000006702	POLR1A	83	93.623	Panthera_pardus
ENSSSCG00000008226	POLR1A	99	92.862	ENSPTIG00000018783	POLR1A	83	92.882	Panthera_tigris_altaica
ENSSSCG00000008226	POLR1A	99	90.794	ENSPTRG00000012147	POLR1A	83	90.820	Pan_troglodytes
ENSSSCG00000008226	POLR1A	99	91.778	ENSPANG00000025908	POLR1A	83	91.801	Papio_anubis
ENSSSCG00000008226	POLR1A	93	77.083	ENSPKIG00000005468	polr1a	81	77.083	Paramormyrops_kingsleyae
ENSSSCG00000008226	POLR1A	55	75.570	ENSPSIG00000009321	-	74	75.693	Pelodiscus_sinensis
ENSSSCG00000008226	POLR1A	65	68.196	ENSPMGG00000009718	polr1a	95	68.196	Periophthalmus_magnuspinnatus
ENSSSCG00000008226	POLR1A	99	89.426	ENSPEMG00000022224	Polr1a	83	89.455	Peromyscus_maniculatus_bairdii
ENSSSCG00000008226	POLR1A	99	81.136	ENSPCIG00000004222	POLR1A	88	81.072	Phascolarctos_cinereus
ENSSSCG00000008226	POLR1A	99	65.806	ENSPFOG00000005025	polr1a	84	65.532	Poecilia_formosa
ENSSSCG00000008226	POLR1A	99	66.177	ENSPLAG00000021389	polr1a	83	66.155	Poecilia_latipinna
ENSSSCG00000008226	POLR1A	99	63.782	ENSPMEG00000006463	polr1a	83	64.067	Poecilia_mexicana
ENSSSCG00000008226	POLR1A	99	66.015	ENSPREG00000002389	polr1a	83	66.015	Poecilia_reticulata
ENSSSCG00000008226	POLR1A	99	90.232	ENSPPYG00000012217	POLR1A	83	90.259	Pongo_abelii
ENSSSCG00000008226	POLR1A	90	100.000	ENSPCAG00000011582	POLR1A	75	100.000	Procavia_capensis
ENSSSCG00000008226	POLR1A	99	90.730	ENSPCOG00000026987	POLR1A	83	90.826	Propithecus_coquereli
ENSSSCG00000008226	POLR1A	93	90.146	ENSPVAG00000012674	POLR1A	78	89.474	Pteropus_vampyrus
ENSSSCG00000008226	POLR1A	99	66.690	ENSPNYG00000000026	polr1a	83	66.783	Pundamilia_nyererei
ENSSSCG00000008226	POLR1A	99	68.020	ENSPNAG00000019223	polr1a	83	68.109	Pygocentrus_nattereri
ENSSSCG00000008226	POLR1A	99	89.286	ENSRNOG00000009545	Polr1a	83	89.316	Rattus_norvegicus
ENSSSCG00000008226	POLR1A	99	90.794	ENSRBIG00000028335	POLR1A	83	90.820	Rhinopithecus_bieti
ENSSSCG00000008226	POLR1A	99	90.724	ENSRROG00000031473	POLR1A	83	90.750	Rhinopithecus_roxellana
ENSSSCG00000008226	POLR1A	99	37.977	YOR341W	RPA190	84	37.977	Saccharomyces_cerevisiae
ENSSSCG00000008226	POLR1A	99	89.599	ENSSBOG00000030262	POLR1A	83	89.629	Saimiri_boliviensis_boliviensis
ENSSSCG00000008226	POLR1A	99	72.549	ENSSHAG00000014739	POLR1A	83	72.759	Sarcophilus_harrisii
ENSSSCG00000008226	POLR1A	99	69.580	ENSSFOG00015019716	polr1a	84	69.580	Scleropages_formosus
ENSSSCG00000008226	POLR1A	99	66.573	ENSSMAG00000014342	polr1a	83	66.573	Scophthalmus_maximus
ENSSSCG00000008226	POLR1A	99	67.972	ENSSDUG00000014631	polr1a	83	68.061	Seriola_dumerili
ENSSSCG00000008226	POLR1A	99	65.546	ENSSLDG00000024095	polr1a	83	65.642	Seriola_lalandi_dorsalis
ENSSSCG00000008226	POLR1A	83	92.000	ENSSARG00000003136	-	70	92.000	Sorex_araneus
ENSSSCG00000008226	POLR1A	99	71.899	ENSSPUG00000004215	POLR1A	86	73.987	Sphenodon_punctatus
ENSSSCG00000008226	POLR1A	76	71.769	ENSSPAG00000016341	polr1a	94	71.769	Stegastes_partitus
ENSSSCG00000008226	POLR1A	98	72.171	ENSTGUG00000010704	POLR1A	83	72.171	Taeniopygia_guttata
ENSSSCG00000008226	POLR1A	99	65.618	ENSTRUG00000002210	polr1a	97	65.094	Takifugu_rubripes
ENSSSCG00000008226	POLR1A	99	62.552	ENSTNIG00000010116	polr1a	83	62.552	Tetraodon_nigroviridis
ENSSSCG00000008226	POLR1A	74	97.345	ENSTBEG00000008646	POLR1A	62	97.345	Tupaia_belangeri
ENSSSCG00000008226	POLR1A	99	88.826	ENSTTRG00000008597	POLR1A	83	88.858	Tursiops_truncatus
ENSSSCG00000008226	POLR1A	62	92.986	ENSUAMG00000012158	-	71	93.018	Ursus_americanus
ENSSSCG00000008226	POLR1A	99	91.778	ENSUMAG00000006700	POLR1A	97	90.986	Ursus_maritimus
ENSSSCG00000008226	POLR1A	99	92.410	ENSVVUG00000001245	POLR1A	83	92.432	Vulpes_vulpes
ENSSSCG00000008226	POLR1A	99	69.371	ENSXETG00000001952	polr1a	100	69.559	Xenopus_tropicalis
ENSSSCG00000008226	POLR1A	99	66.015	ENSXMAG00000004032	polr1a	83	66.063	Xiphophorus_maculatus