EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSSSCG00000008359 (Gene tree)
Gene ID: 595116
Gene Symbol: RAB1A
Alias: RAB1B
Full Name: RAB1A%2C member RAS oncogene family
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 32894 bases
Position: chr3:76837309-76870202
Accession: 595116
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000019583	MMR_HSR1	PF01926.23	2.1e-05	1	1
ENSSSCP00000008922	MMR_HSR1	PF01926.23	2.4e-05	1	1
ENSSSCP00000053998	MMR_HSR1	PF01926.23	3.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000009153	-	3028	-	ENSSSCP00000008922	205 (aa)	-	F2Z5U4
ENSSSCT00000031971	-	3662	-	ENSSSCP00000019583	197 (aa)	-	I3L6D2
ENSSSCT00000059098	-	866	-	ENSSSCP00000053998	221 (aa)	-	A0A287BD00

Gene Model

Click here to download ENSSSCG00000008359's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc05134	Legionellosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000008359's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000008359	RAB1A	79	39.623	ENSSSCG00000032672	RAB9B	85	37.430
ENSSSCG00000008359	RAB1A	76	35.570	ENSSSCG00000025041	-	85	35.570
ENSSSCG00000008359	RAB1A	59	33.058	ENSSSCG00000034387	ARL2-SNX15	54	33.058
ENSSSCG00000008359	RAB1A	98	42.857	ENSSSCG00000037653	RAB5A	90	42.857
ENSSSCG00000008359	RAB1A	84	35.329	ENSSSCG00000027443	MRAS	80	35.329
ENSSSCG00000008359	RAB1A	67	30.935	ENSSSCG00000017380	ARL4D	69	30.935
ENSSSCG00000008359	RAB1A	59	31.933	ENSSSCG00000032709	ARL4A	59	31.933
ENSSSCG00000008359	RAB1A	80	40.373	ENSSSCG00000017769	RAB34	62	40.373
ENSSSCG00000008359	RAB1A	84	47.059	ENSSSCG00000012658	RAB33A	62	47.059
ENSSSCG00000008359	RAB1A	83	38.415	ENSSSCG00000032477	NRAS	86	38.415
ENSSSCG00000008359	RAB1A	83	44.643	ENSSSCG00000020711	RAB33B	79	43.646
ENSSSCG00000008359	RAB1A	83	50.610	ENSSSCG00000014900	RAB30	82	50.602
ENSSSCG00000008359	RAB1A	99	52.551	ENSSSCG00000006564	-	99	52.239
ENSSSCG00000008359	RAB1A	81	39.264	ENSSSCG00000011615	RAB7A	79	39.264
ENSSSCG00000008359	RAB1A	99	34.450	ENSSSCG00000010048	RAB36	93	31.707
ENSSSCG00000008359	RAB1A	100	40.299	ENSSSCG00000039186	RAB25	97	40.580
ENSSSCG00000008359	RAB1A	99	40.566	ENSSSCG00000030432	-	97	40.187
ENSSSCG00000008359	RAB1A	59	33.613	ENSSSCG00000011734	ARL14	59	33.613
ENSSSCG00000008359	RAB1A	60	31.933	ENSSSCG00000011535	-	62	31.667
ENSSSCG00000008359	RAB1A	98	45.596	ENSSSCG00000005514	RAB14	93	44.554
ENSSSCG00000008359	RAB1A	98	38.384	ENSSSCG00000014828	RAB6A	94	38.384
ENSSSCG00000008359	RAB1A	87	35.028	ENSSSCG00000031513	HRAS	93	35.028
ENSSSCG00000008359	RAB1A	92	46.703	ENSSSCG00000028655	RAB18	93	45.876
ENSSSCG00000008359	RAB1A	100	45.894	ENSSSCG00000013600	RAB11B	99	45.581
ENSSSCG00000008359	RAB1A	85	50.296	ENSSSCG00000038026	RAB12	70	50.000
ENSSSCG00000008359	RAB1A	59	31.092	ENSSSCG00000034293	ARL4C	61	31.092
ENSSSCG00000008359	RAB1A	98	36.410	ENSSSCG00000036503	RAB6B	94	36.410
ENSSSCG00000008359	RAB1A	98	42.564	ENSSSCG00000032467	RAB5C	89	42.564
ENSSSCG00000008359	RAB1A	81	35.849	ENSSSCG00000029539	RAB23	81	34.524
ENSSSCG00000008359	RAB1A	85	32.544	ENSSSCG00000016434	RHEB	91	32.544
ENSSSCG00000008359	RAB1A	79	39.623	ENSSSCG00000012123	RAB9A	79	39.623
ENSSSCG00000008359	RAB1A	100	93.401	ENSSSCG00000012954	RAB1B	98	96.111
ENSSSCG00000008359	RAB1A	86	44.767	ENSSSCG00000024233	RAB39B	84	43.820
ENSSSCG00000008359	RAB1A	93	48.087	ENSSSCG00000006232	RAB2A	99	47.980
ENSSSCG00000008359	RAB1A	98	37.629	ENSSSCG00000007513	RAB22A	97	37.629
ENSSSCG00000008359	RAB1A	99	46.939	ENSSSCG00000029544	RAB2B	99	46.970
ENSSSCG00000008359	RAB1A	100	46.829	ENSSSCG00000032312	RAB11A	96	46.635
ENSSSCG00000008359	RAB1A	81	51.250	ENSSSCG00000002280	RAB15	78	50.909
ENSSSCG00000008359	RAB1A	83	37.805	ENSSSCG00000026969	KRAS	95	35.912
ENSSSCG00000008359	RAB1A	100	54.315	ENSSSCG00000033876	RAB35	100	53.960
ENSSSCG00000008359	RAB1A	59	34.746	ENSSSCG00000036967	ARL8A	61	34.746

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000008359	RAB1A	100	100.000	ENSG00000138069	RAB1A	100	100.000	Homo_sapiens
ENSSSCG00000008359	RAB1A	100	95.431	ENSAPOG00000008143	-	100	95.545	Acanthochromis_polyacanthus
ENSSSCG00000008359	RAB1A	100	100.000	ENSAMEG00000001127	RAB1A	100	100.000	Ailuropoda_melanoleuca
ENSSSCG00000008359	RAB1A	100	95.431	ENSAOCG00000020606	-	100	95.545	Amphiprion_ocellaris
ENSSSCG00000008359	RAB1A	100	95.431	ENSAPEG00000022488	-	100	95.545	Amphiprion_percula
ENSSSCG00000008359	RAB1A	100	100.000	ENSANAG00000020929	RAB1A	100	100.000	Aotus_nancymaae
ENSSSCG00000008359	RAB1A	100	95.939	ENSACLG00000003326	-	100	96.040	Astatotilapia_calliptera
ENSSSCG00000008359	RAB1A	100	94.416	ENSAMXG00000034850	-	100	94.554	Astyanax_mexicanus
ENSSSCG00000008359	RAB1A	100	100.000	ENSBTAG00000016720	RAB1A	100	100.000	Bos_taurus
ENSSSCG00000008359	RAB1A	100	100.000	ENSCJAG00000046275	RAB1A	100	100.000	Callithrix_jacchus
ENSSSCG00000008359	RAB1A	100	100.000	ENSCAFG00000003187	RAB1A	100	100.000	Canis_familiaris
ENSSSCG00000008359	RAB1A	100	100.000	ENSCAFG00020026971	RAB1A	100	100.000	Canis_lupus_dingo
ENSSSCG00000008359	RAB1A	100	100.000	ENSCHIG00000014060	RAB1A	97	100.000	Capra_hircus
ENSSSCG00000008359	RAB1A	100	100.000	ENSTSYG00000005996	RAB1A	100	100.000	Carlito_syrichta
ENSSSCG00000008359	RAB1A	100	100.000	ENSCPOG00000015437	RAB1A	100	100.000	Cavia_porcellus
ENSSSCG00000008359	RAB1A	100	100.000	ENSCCAG00000021869	RAB1A	100	100.000	Cebus_capucinus
ENSSSCG00000008359	RAB1A	100	100.000	ENSCATG00000030853	RAB1A	100	100.000	Cercocebus_atys
ENSSSCG00000008359	RAB1A	100	100.000	ENSCLAG00000014766	RAB1A	100	100.000	Chinchilla_lanigera
ENSSSCG00000008359	RAB1A	100	99.512	ENSCPBG00000013243	RAB1A	100	99.512	Chrysemys_picta_bellii
ENSSSCG00000008359	RAB1A	100	97.561	ENSCANG00000035916	RAB1A	100	97.561	Colobus_angolensis_palliatus
ENSSSCG00000008359	RAB1A	100	100.000	ENSCGRG00001012691	-	100	100.000	Cricetulus_griseus_chok1gshd
ENSSSCG00000008359	RAB1A	100	100.000	ENSCGRG00000008456	-	100	100.000	Cricetulus_griseus_crigri
ENSSSCG00000008359	RAB1A	100	100.000	ENSDNOG00000018236	RAB1A	100	100.000	Dasypus_novemcinctus
ENSSSCG00000008359	RAB1A	100	100.000	ENSDORG00000028628	-	100	100.000	Dipodomys_ordii
ENSSSCG00000008359	RAB1A	100	84.466	FBgn0285937	Rab1	100	84.466	Drosophila_melanogaster
ENSSSCG00000008359	RAB1A	100	100.000	ENSETEG00000002205	RAB1A	100	100.000	Echinops_telfairi
ENSSSCG00000008359	RAB1A	100	100.000	ENSEASG00005007298	RAB1A	100	100.000	Equus_asinus_asinus
ENSSSCG00000008359	RAB1A	100	100.000	ENSECAG00000009926	RAB1A	100	100.000	Equus_caballus
ENSSSCG00000008359	RAB1A	100	100.000	ENSEEUG00000011721	RAB1A	100	100.000	Erinaceus_europaeus
ENSSSCG00000008359	RAB1A	100	95.477	ENSELUG00000012166	RAB1A	96	95.588	Esox_lucius
ENSSSCG00000008359	RAB1A	100	100.000	ENSFCAG00000002536	RAB1A	100	100.000	Felis_catus
ENSSSCG00000008359	RAB1A	100	99.492	ENSFALG00000013624	RAB1A	99	98.020	Ficedula_albicollis
ENSSSCG00000008359	RAB1A	100	100.000	ENSFDAG00000019505	-	100	100.000	Fukomys_damarensis
ENSSSCG00000008359	RAB1A	100	94.416	ENSFHEG00000014414	-	100	94.554	Fundulus_heteroclitus
ENSSSCG00000008359	RAB1A	100	99.512	ENSGALG00000031582	RAB1A	100	99.512	Gallus_gallus
ENSSSCG00000008359	RAB1A	100	94.416	ENSGAFG00000000918	-	100	94.554	Gambusia_affinis
ENSSSCG00000008359	RAB1A	100	99.512	ENSGAGG00000006802	RAB1A	100	99.512	Gopherus_agassizii
ENSSSCG00000008359	RAB1A	100	100.000	ENSGGOG00000026603	RAB1A	100	100.000	Gorilla_gorilla
ENSSSCG00000008359	RAB1A	100	100.000	ENSHGLG00000013585	RAB1A	100	100.000	Heterocephalus_glaber_female
ENSSSCG00000008359	RAB1A	100	100.000	ENSHGLG00100007994	RAB1A	99	98.515	Heterocephalus_glaber_male
ENSSSCG00000008359	RAB1A	100	100.000	ENSSTOG00000020693	-	100	100.000	Ictidomys_tridecemlineatus
ENSSSCG00000008359	RAB1A	100	100.000	ENSJJAG00000014396	Rab1a	100	100.000	Jaculus_jaculus
ENSSSCG00000008359	RAB1A	100	95.431	ENSKMAG00000014038	-	96	94.554	Kryptolebias_marmoratus
ENSSSCG00000008359	RAB1A	100	94.924	ENSLBEG00000028426	RAB1A	100	95.050	Labrus_bergylta
ENSSSCG00000008359	RAB1A	100	98.985	ENSLACG00000012869	RAB1A	100	98.537	Latimeria_chalumnae
ENSSSCG00000008359	RAB1A	100	100.000	ENSLAFG00000016666	RAB1A	100	100.000	Loxodonta_africana
ENSSSCG00000008359	RAB1A	100	100.000	ENSMFAG00000046246	RAB1A	100	100.000	Macaca_fascicularis
ENSSSCG00000008359	RAB1A	100	100.000	ENSMMUG00000021721	RAB1A	92	100.000	Macaca_mulatta
ENSSSCG00000008359	RAB1A	95	99.485	ENSMNEG00000028414	-	97	99.485	Macaca_nemestrina
ENSSSCG00000008359	RAB1A	100	100.000	ENSMLEG00000042535	RAB1A	100	100.000	Mandrillus_leucophaeus
ENSSSCG00000008359	RAB1A	100	95.939	ENSMZEG00005013959	-	100	96.040	Maylandia_zebra
ENSSSCG00000008359	RAB1A	100	99.492	ENSMGAG00000004611	RAB1A	98	99.495	Meleagris_gallopavo
ENSSSCG00000008359	RAB1A	100	99.512	ENSMAUG00000012156	Rab1a	100	99.512	Mesocricetus_auratus
ENSSSCG00000008359	RAB1A	100	100.000	ENSMICG00000012587	RAB1A	100	100.000	Microcebus_murinus
ENSSSCG00000008359	RAB1A	100	99.512	ENSMOCG00000017022	Rab1a	100	99.512	Microtus_ochrogaster
ENSSSCG00000008359	RAB1A	100	93.401	ENSMMOG00000018709	RAB1A	100	93.564	Mola_mola
ENSSSCG00000008359	RAB1A	100	99.512	ENSMODG00000003340	RAB1A	100	99.512	Monodelphis_domestica
ENSSSCG00000008359	RAB1A	100	100.000	MGP_CAROLIEiJ_G0016115	Rab1a	100	100.000	Mus_caroli
ENSSSCG00000008359	RAB1A	100	100.000	ENSMUSG00000020149	Rab1a	100	100.000	Mus_musculus
ENSSSCG00000008359	RAB1A	100	100.000	MGP_PahariEiJ_G0016776	Rab1a	100	100.000	Mus_pahari
ENSSSCG00000008359	RAB1A	100	100.000	MGP_SPRETEiJ_G0016958	Rab1a	100	100.000	Mus_spretus
ENSSSCG00000008359	RAB1A	100	100.000	ENSMPUG00000006139	RAB1A	82	100.000	Mustela_putorius_furo
ENSSSCG00000008359	RAB1A	100	100.000	ENSMLUG00000009489	RAB1A	100	100.000	Myotis_lucifugus
ENSSSCG00000008359	RAB1A	100	100.000	ENSNGAG00000005838	Rab1a	100	100.000	Nannospalax_galili
ENSSSCG00000008359	RAB1A	100	95.939	ENSNBRG00000020492	-	100	96.040	Neolamprologus_brichardi
ENSSSCG00000008359	RAB1A	100	100.000	ENSOPRG00000006595	RAB1A	100	100.000	Ochotona_princeps
ENSSSCG00000008359	RAB1A	97	100.000	ENSODEG00000011248	-	96	100.000	Octodon_degus
ENSSSCG00000008359	RAB1A	100	93.909	ENSONIG00000006819	-	100	93.627	Oreochromis_niloticus
ENSSSCG00000008359	RAB1A	100	99.512	ENSOANG00000012438	RAB1A	100	99.512	Ornithorhynchus_anatinus
ENSSSCG00000008359	RAB1A	100	100.000	ENSOCUG00000017003	RAB1A	100	100.000	Oryctolagus_cuniculus
ENSSSCG00000008359	RAB1A	100	100.000	ENSOGAG00000026181	RAB1A	100	100.000	Otolemur_garnettii
ENSSSCG00000008359	RAB1A	100	100.000	ENSOARG00000019997	RAB1A	98	100.000	Ovis_aries
ENSSSCG00000008359	RAB1A	100	100.000	ENSPPAG00000030253	RAB1A	100	100.000	Pan_paniscus
ENSSSCG00000008359	RAB1A	100	100.000	ENSPPRG00000025077	RAB1A	100	100.000	Panthera_pardus
ENSSSCG00000008359	RAB1A	100	100.000	ENSPTIG00000013471	RAB1A	97	100.000	Panthera_tigris_altaica
ENSSSCG00000008359	RAB1A	100	100.000	ENSPTRG00000011989	RAB1A	100	100.000	Pan_troglodytes
ENSSSCG00000008359	RAB1A	100	100.000	ENSPANG00000010485	RAB1A	100	100.000	Papio_anubis
ENSSSCG00000008359	RAB1A	100	99.492	ENSPSIG00000008028	RAB1A	99	98.039	Pelodiscus_sinensis
ENSSSCG00000008359	RAB1A	100	95.939	ENSPMGG00000021015	-	99	95.588	Periophthalmus_magnuspinnatus
ENSSSCG00000008359	RAB1A	100	100.000	ENSPEMG00000009340	Rab1a	100	100.000	Peromyscus_maniculatus_bairdii
ENSSSCG00000008359	RAB1A	100	99.512	ENSPCIG00000023212	RAB1A	100	99.512	Phascolarctos_cinereus
ENSSSCG00000008359	RAB1A	100	93.909	ENSPFOG00000000498	-	99	93.137	Poecilia_formosa
ENSSSCG00000008359	RAB1A	100	93.909	ENSPLAG00000015592	-	100	94.059	Poecilia_latipinna
ENSSSCG00000008359	RAB1A	100	93.909	ENSPMEG00000005288	-	100	94.059	Poecilia_mexicana
ENSSSCG00000008359	RAB1A	100	100.000	ENSPPYG00000012360	RAB1A	100	100.000	Pongo_abelii
ENSSSCG00000008359	RAB1A	100	100.000	ENSPCOG00000017244	RAB1A	100	100.000	Propithecus_coquereli
ENSSSCG00000008359	RAB1A	100	95.939	ENSPNYG00000015841	-	100	96.040	Pundamilia_nyererei
ENSSSCG00000008359	RAB1A	100	100.000	ENSRNOG00000004992	Rab1a	100	100.000	Rattus_norvegicus
ENSSSCG00000008359	RAB1A	100	100.000	ENSSBOG00000023732	RAB1A	100	100.000	Saimiri_boliviensis_boliviensis
ENSSSCG00000008359	RAB1A	100	99.492	ENSSHAG00000003597	RAB1A	98	98.010	Sarcophilus_harrisii
ENSSSCG00000008359	RAB1A	100	95.431	ENSSMAG00000021049	-	100	95.545	Scophthalmus_maximus
ENSSSCG00000008359	RAB1A	100	95.939	ENSSDUG00000022535	RAB1A	100	96.040	Seriola_dumerili
ENSSSCG00000008359	RAB1A	100	99.512	ENSSPUG00000012822	RAB1A	100	99.512	Sphenodon_punctatus
ENSSSCG00000008359	RAB1A	100	95.431	ENSSPAG00000012564	-	100	95.545	Stegastes_partitus
ENSSSCG00000008359	RAB1A	100	99.492	ENSTGUG00000002328	RAB1A	100	97.073	Taeniopygia_guttata
ENSSSCG00000008359	RAB1A	100	94.924	ENSTRUG00000024994	RAB1A	100	95.050	Takifugu_rubripes
ENSSSCG00000008359	RAB1A	100	100.000	ENSUMAG00000021038	RAB1A	99	100.000	Ursus_maritimus
ENSSSCG00000008359	RAB1A	100	100.000	ENSVPAG00000005640	RAB1A	99	99.495	Vicugna_pacos
ENSSSCG00000008359	RAB1A	100	100.000	ENSVVUG00000027588	RAB1A	100	100.000	Vulpes_vulpes
ENSSSCG00000008359	RAB1A	100	94.416	ENSXMAG00000015776	-	100	94.554	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000045	autophagosome assembly	-	ISS	Process
GO:0003924	GTPase activity	-	ISS	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005769	early endosome	-	IEA	Component
GO:0005829	cytosol	-	IEA	Component
GO:0006888	ER to Golgi vesicle-mediated transport	-	ISS	Process
GO:0006897	endocytosis	-	ISS	Process
GO:0006914	autophagy	-	ISS	Process
GO:0016477	cell migration	-	ISS	Process
GO:0030252	growth hormone secretion	-	ISS	Process
GO:0042470	melanosome	-	IEA	Component
GO:0042742	defense response to bacterium	-	ISS	Process
GO:0047496	vesicle transport along microtubule	-	ISS	Process
GO:0072606	interleukin-8 secretion	-	ISS	Process