EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000008445 (Gene tree)
Gene ID: 100525459
Gene Symbol: SRBD1
Alias: FLJ10379
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 225379 bases
Position: chr3:94909139-95134517
Accession: 100525459
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000031847	S1	PF00575.23	3.7e-09	1	1
ENSSSCP00000042382	S1	PF00575.23	4.1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000044314	SRBD1-203	3464	XM_021087564	ENSSSCP00000031847	953 (aa)	XP_020943223	A0A286ZK61
ENSSSCT00000046422	SRBD1-201	4222	XM_021087562	ENSSSCP00000042382	1012 (aa)	XP_020943221	A0A287AEY1
ENSSSCT00000009247	SRBD1-202	2917	-	ENSSSCP00000009013	957 (aa)	-	F1S5K6

Gene Model

Click here to download ENSSSCG00000008445's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000008445's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000008445	SRBD1	98	90.261	ENSG00000068784	SRBD1	100	89.659	Homo_sapiens
ENSSSCG00000008445	SRBD1	96	59.239	ENSAPOG00000005103	si:ch211-117n7.8	94	53.272	Acanthochromis_polyacanthus
ENSSSCG00000008445	SRBD1	98	93.273	ENSAMEG00000005993	SRBD1	100	92.871	Ailuropoda_melanoleuca
ENSSSCG00000008445	SRBD1	81	57.533	ENSACIG00000009875	si:ch211-117n7.8	85	58.314	Amphilophus_citrinellus
ENSSSCG00000008445	SRBD1	96	59.239	ENSAOCG00000024718	si:ch211-117n7.8	99	51.957	Amphiprion_ocellaris
ENSSSCG00000008445	SRBD1	95	53.115	ENSAPEG00000002645	si:ch211-117n7.8	99	53.115	Amphiprion_percula
ENSSSCG00000008445	SRBD1	98	51.741	ENSATEG00000010844	si:ch211-117n7.8	84	58.099	Anabas_testudineus
ENSSSCG00000008445	SRBD1	98	72.239	ENSAPLG00000006313	SRBD1	100	72.112	Anas_platyrhynchos
ENSSSCG00000008445	SRBD1	98	89.558	ENSANAG00000025573	SRBD1	100	88.956	Aotus_nancymaae
ENSSSCG00000008445	SRBD1	98	50.575	ENSACLG00000024219	si:ch211-117n7.8	94	53.019	Astatotilapia_calliptera
ENSSSCG00000008445	SRBD1	92	56.977	ENSAMXG00000004294	SRBD1	93	56.849	Astyanax_mexicanus
ENSSSCG00000008445	SRBD1	100	90.865	ENSBTAG00000007508	SRBD1	100	90.865	Bos_taurus
ENSSSCG00000008445	SRBD1	98	89.157	ENSCJAG00000000727	SRBD1	100	88.755	Callithrix_jacchus
ENSSSCG00000008445	SRBD1	98	92.578	ENSCAFG00000002554	SRBD1	100	92.177	Canis_familiaris
ENSSSCG00000008445	SRBD1	99	88.450	ENSCAFG00020026284	SRBD1	99	93.042	Canis_lupus_dingo
ENSSSCG00000008445	SRBD1	100	92.885	ENSCHIG00000016535	SRBD1	100	92.885	Capra_hircus
ENSSSCG00000008445	SRBD1	98	91.683	ENSTSYG00000012797	SRBD1	100	91.182	Carlito_syrichta
ENSSSCG00000008445	SRBD1	97	91.304	ENSCPOG00000004773	SRBD1	100	87.450	Cavia_porcellus
ENSSSCG00000008445	SRBD1	98	90.261	ENSCCAG00000025589	SRBD1	100	89.659	Cebus_capucinus
ENSSSCG00000008445	SRBD1	98	90.663	ENSCATG00000039530	SRBD1	100	90.060	Cercocebus_atys
ENSSSCG00000008445	SRBD1	98	89.590	ENSCLAG00000008623	SRBD1	100	89.289	Chinchilla_lanigera
ENSSSCG00000008445	SRBD1	98	90.863	ENSCSAG00000013350	SRBD1	100	90.261	Chlorocebus_sabaeus
ENSSSCG00000008445	SRBD1	85	96.178	ENSCHOG00000003805	SRBD1	87	96.178	Choloepus_hoffmanni
ENSSSCG00000008445	SRBD1	98	74.749	ENSCPBG00000005677	SRBD1	100	75.226	Chrysemys_picta_bellii
ENSSSCG00000008445	SRBD1	77	42.621	ENSCING00000005950	-	99	42.621	Ciona_intestinalis
ENSSSCG00000008445	SRBD1	78	42.893	ENSCSAVG00000000861	-	99	42.893	Ciona_savignyi
ENSSSCG00000008445	SRBD1	98	90.342	ENSCANG00000016307	SRBD1	99	89.738	Colobus_angolensis_palliatus
ENSSSCG00000008445	SRBD1	98	85.743	ENSCGRG00001000513	Srbd1	100	85.643	Cricetulus_griseus_chok1gshd
ENSSSCG00000008445	SRBD1	98	85.743	ENSCGRG00000002283	Srbd1	100	85.643	Cricetulus_griseus_crigri
ENSSSCG00000008445	SRBD1	83	56.694	ENSCSEG00000000856	si:ch211-117n7.8	85	56.810	Cynoglossus_semilaevis
ENSSSCG00000008445	SRBD1	82	57.362	ENSCVAG00000020212	si:ch211-117n7.8	98	54.362	Cyprinodon_variegatus
ENSSSCG00000008445	SRBD1	98	91.291	ENSDNOG00000018686	SRBD1	100	90.691	Dasypus_novemcinctus
ENSSSCG00000008445	SRBD1	98	86.533	ENSDORG00000010468	Srbd1	100	86.533	Dipodomys_ordii
ENSSSCG00000008445	SRBD1	93	33.902	FBgn0051156	CG31156	98	34.102	Drosophila_melanogaster
ENSSSCG00000008445	SRBD1	88	83.066	ENSETEG00000000739	SRBD1	91	83.066	Echinops_telfairi
ENSSSCG00000008445	SRBD1	72	48.234	ENSEBUG00000008902	si:ch211-117n7.8	96	48.234	Eptatretus_burgeri
ENSSSCG00000008445	SRBD1	98	90.562	ENSEASG00005003132	SRBD1	97	96.815	Equus_asinus_asinus
ENSSSCG00000008445	SRBD1	100	93.880	ENSECAG00000013865	SRBD1	100	93.287	Equus_caballus
ENSSSCG00000008445	SRBD1	95	55.204	ENSELUG00000012592	si:ch211-117n7.8	91	55.204	Esox_lucius
ENSSSCG00000008445	SRBD1	98	93.574	ENSFCAG00000005101	SRBD1	100	92.972	Felis_catus
ENSSSCG00000008445	SRBD1	98	69.408	ENSFALG00000012966	SRBD1	100	69.509	Ficedula_albicollis
ENSSSCG00000008445	SRBD1	96	87.988	ENSFDAG00000016670	SRBD1	98	88.266	Fukomys_damarensis
ENSSSCG00000008445	SRBD1	96	52.118	ENSFHEG00000019480	si:ch211-117n7.8	82	58.099	Fundulus_heteroclitus
ENSSSCG00000008445	SRBD1	50	52.573	ENSGMOG00000018010	-	100	52.573	Gadus_morhua
ENSSSCG00000008445	SRBD1	98	71.357	ENSGALG00000009990	SRBD1	100	71.557	Gallus_gallus
ENSSSCG00000008445	SRBD1	87	54.465	ENSGAFG00000019664	si:ch211-117n7.8	93	53.002	Gambusia_affinis
ENSSSCG00000008445	SRBD1	61	60.979	ENSGACG00000010794	si:ch211-117n7.8	100	61.342	Gasterosteus_aculeatus
ENSSSCG00000008445	SRBD1	83	82.156	ENSGAGG00000006166	SRBD1	99	82.156	Gopherus_agassizii
ENSSSCG00000008445	SRBD1	96	90.619	ENSGGOG00000005910	SRBD1	99	90.654	Gorilla_gorilla
ENSSSCG00000008445	SRBD1	83	50.237	ENSHBUG00000013207	si:ch211-117n7.8	97	46.930	Haplochromis_burtoni
ENSSSCG00000008445	SRBD1	98	88.531	ENSHGLG00000018153	-	99	87.928	Heterocephalus_glaber_female
ENSSSCG00000008445	SRBD1	98	88.330	ENSHGLG00100015183	-	99	87.726	Heterocephalus_glaber_male
ENSSSCG00000008445	SRBD1	94	55.951	ENSIPUG00000009661	srbd1	94	56.790	Ictalurus_punctatus
ENSSSCG00000008445	SRBD1	98	90.873	ENSSTOG00000005898	SRBD1	100	90.271	Ictidomys_tridecemlineatus
ENSSSCG00000008445	SRBD1	98	81.363	ENSJJAG00000022244	Srbd1	100	81.062	Jaculus_jaculus
ENSSSCG00000008445	SRBD1	98	50.875	ENSKMAG00000003473	si:ch211-117n7.8	99	50.584	Kryptolebias_marmoratus
ENSSSCG00000008445	SRBD1	96	51.462	ENSLBEG00000027518	si:ch211-117n7.8	97	51.473	Labrus_bergylta
ENSSSCG00000008445	SRBD1	83	71.513	ENSLACG00000009790	SRBD1	99	71.513	Latimeria_chalumnae
ENSSSCG00000008445	SRBD1	98	57.466	ENSLOCG00000016360	si:ch211-117n7.8	99	57.591	Lepisosteus_oculatus
ENSSSCG00000008445	SRBD1	98	90.964	ENSMFAG00000042026	SRBD1	100	90.361	Macaca_fascicularis
ENSSSCG00000008445	SRBD1	98	90.863	ENSMMUG00000003490	SRBD1	100	90.261	Macaca_mulatta
ENSSSCG00000008445	SRBD1	98	88.253	ENSMNEG00000034701	SRBD1	100	87.651	Macaca_nemestrina
ENSSSCG00000008445	SRBD1	98	90.763	ENSMLEG00000000745	SRBD1	100	90.161	Mandrillus_leucophaeus
ENSSSCG00000008445	SRBD1	81	56.766	ENSMAMG00000021921	si:ch211-117n7.8	97	51.423	Mastacembelus_armatus
ENSSSCG00000008445	SRBD1	98	50.575	ENSMZEG00005027369	si:ch211-117n7.8	94	52.744	Maylandia_zebra
ENSSSCG00000008445	SRBD1	78	76.537	ENSMGAG00000010273	SRBD1	99	76.537	Meleagris_gallopavo
ENSSSCG00000008445	SRBD1	78	87.469	ENSMAUG00000013916	Srbd1	99	85.362	Mesocricetus_auratus
ENSSSCG00000008445	SRBD1	98	92.269	ENSMICG00000007835	SRBD1	100	91.667	Microcebus_murinus
ENSSSCG00000008445	SRBD1	98	84.137	ENSMOCG00000018716	Srbd1	100	84.036	Microtus_ochrogaster
ENSSSCG00000008445	SRBD1	82	56.639	ENSMMOG00000007507	si:ch211-117n7.8	87	56.639	Mola_mola
ENSSSCG00000008445	SRBD1	98	51.062	ENSMALG00000001562	si:ch211-117n7.8	99	51.156	Monopterus_albus
ENSSSCG00000008445	SRBD1	98	81.928	MGP_CAROLIEiJ_G0021934	Srbd1	99	84.984	Mus_caroli
ENSSSCG00000008445	SRBD1	98	82.430	ENSMUSG00000024135	Srbd1	99	84.694	Mus_musculus
ENSSSCG00000008445	SRBD1	98	81.325	MGP_PahariEiJ_G0020924	Srbd1	100	81.225	Mus_pahari
ENSSSCG00000008445	SRBD1	98	82.731	MGP_SPRETEiJ_G0022850	Srbd1	100	82.631	Mus_spretus
ENSSSCG00000008445	SRBD1	98	89.056	ENSMLUG00000007039	SRBD1	100	88.454	Myotis_lucifugus
ENSSSCG00000008445	SRBD1	98	83.855	ENSNGAG00000011893	Srbd1	100	83.855	Nannospalax_galili
ENSSSCG00000008445	SRBD1	82	56.109	ENSNBRG00000012873	si:ch211-117n7.8	95	52.033	Neolamprologus_brichardi
ENSSSCG00000008445	SRBD1	98	90.361	ENSNLEG00000016877	SRBD1	100	89.759	Nomascus_leucogenys
ENSSSCG00000008445	SRBD1	98	86.145	ENSODEG00000012095	SRBD1	100	85.542	Octodon_degus
ENSSSCG00000008445	SRBD1	94	52.658	ENSONIG00000000945	si:ch211-117n7.8	100	58.563	Oreochromis_niloticus
ENSSSCG00000008445	SRBD1	98	92.068	ENSOCUG00000015385	SRBD1	100	91.466	Oryctolagus_cuniculus
ENSSSCG00000008445	SRBD1	97	49.657	ENSORLG00000004427	si:ch211-117n7.8	97	49.405	Oryzias_latipes
ENSSSCG00000008445	SRBD1	98	50.821	ENSORLG00020012792	si:ch211-117n7.8	99	50.821	Oryzias_latipes_hni
ENSSSCG00000008445	SRBD1	98	51.064	ENSORLG00015018598	si:ch211-117n7.8	99	50.580	Oryzias_latipes_hsok
ENSSSCG00000008445	SRBD1	96	50.100	ENSOMEG00000012229	si:ch211-117n7.8	97	50.651	Oryzias_melastigma
ENSSSCG00000008445	SRBD1	98	84.925	ENSOGAG00000001076	SRBD1	100	84.925	Otolemur_garnettii
ENSSSCG00000008445	SRBD1	98	88.641	ENSOARG00000005958	SRBD1	100	88.641	Ovis_aries
ENSSSCG00000008445	SRBD1	98	90.361	ENSPPAG00000038442	SRBD1	100	89.759	Pan_paniscus
ENSSSCG00000008445	SRBD1	98	93.574	ENSPPRG00000003449	SRBD1	100	92.972	Panthera_pardus
ENSSSCG00000008445	SRBD1	98	93.574	ENSPTIG00000012495	SRBD1	100	92.972	Panthera_tigris_altaica
ENSSSCG00000008445	SRBD1	98	90.361	ENSPTRG00000011889	SRBD1	100	89.759	Pan_troglodytes
ENSSSCG00000008445	SRBD1	98	90.562	ENSPANG00000008063	SRBD1	100	89.960	Papio_anubis
ENSSSCG00000008445	SRBD1	93	54.192	ENSPKIG00000021973	si:ch211-117n7.8	99	54.388	Paramormyrops_kingsleyae
ENSSSCG00000008445	SRBD1	98	74.624	ENSPSIG00000008992	SRBD1	100	74.624	Pelodiscus_sinensis
ENSSSCG00000008445	SRBD1	88	53.769	ENSPMGG00000013348	si:ch211-117n7.8	98	51.886	Periophthalmus_magnuspinnatus
ENSSSCG00000008445	SRBD1	98	83.023	ENSPEMG00000020684	Srbd1	100	82.924	Peromyscus_maniculatus_bairdii
ENSSSCG00000008445	SRBD1	98	51.170	ENSPFOG00000010650	si:ch211-117n7.8	93	50.262	Poecilia_formosa
ENSSSCG00000008445	SRBD1	98	51.076	ENSPLAG00000002141	si:ch211-117n7.8	83	57.479	Poecilia_latipinna
ENSSSCG00000008445	SRBD1	94	53.807	ENSPMEG00000018537	si:ch211-117n7.8	93	53.807	Poecilia_mexicana
ENSSSCG00000008445	SRBD1	82	57.597	ENSPREG00000003258	si:ch211-117n7.8	85	57.597	Poecilia_reticulata
ENSSSCG00000008445	SRBD1	99	86.975	ENSPPYG00000012444	SRBD1	96	86.975	Pongo_abelii
ENSSSCG00000008445	SRBD1	80	82.914	ENSPCAG00000005629	SRBD1	85	82.914	Procavia_capensis
ENSSSCG00000008445	SRBD1	98	79.500	ENSPCOG00000017669	SRBD1	100	78.900	Propithecus_coquereli
ENSSSCG00000008445	SRBD1	98	85.714	ENSPVAG00000001782	SRBD1	100	82.129	Pteropus_vampyrus
ENSSSCG00000008445	SRBD1	83	53.892	ENSPNYG00000000508	si:ch211-117n7.8	96	50.626	Pundamilia_nyererei
ENSSSCG00000008445	SRBD1	95	57.451	ENSPNAG00000013492	SRBD1	95	57.421	Pygocentrus_nattereri
ENSSSCG00000008445	SRBD1	98	80.641	ENSRNOG00000014720	Srbd1	99	81.827	Rattus_norvegicus
ENSSSCG00000008445	SRBD1	98	90.443	ENSRBIG00000033486	SRBD1	99	89.839	Rhinopithecus_bieti
ENSSSCG00000008445	SRBD1	98	90.443	ENSRROG00000041599	SRBD1	99	89.839	Rhinopithecus_roxellana
ENSSSCG00000008445	SRBD1	98	89.659	ENSSBOG00000024982	SRBD1	100	89.056	Saimiri_boliviensis_boliviensis
ENSSSCG00000008445	SRBD1	82	59.479	ENSSFOG00015001128	si:ch211-117n7.8	90	59.479	Scleropages_formosus
ENSSSCG00000008445	SRBD1	98	51.404	ENSSMAG00000018256	si:ch211-117n7.8	94	53.224	Scophthalmus_maximus
ENSSSCG00000008445	SRBD1	94	52.637	ENSSLDG00000023189	si:ch211-117n7.8	96	52.637	Seriola_lalandi_dorsalis
ENSSSCG00000008445	SRBD1	98	79.618	ENSSARG00000009740	SRBD1	100	79.618	Sorex_araneus
ENSSSCG00000008445	SRBD1	87	76.584	ENSSPUG00000010475	SRBD1	100	72.557	Sphenodon_punctatus
ENSSSCG00000008445	SRBD1	82	55.516	ENSSPAG00000008092	-	99	50.397	Stegastes_partitus
ENSSSCG00000008445	SRBD1	80	81.374	ENSTGUG00000003878	SRBD1	100	78.580	Taeniopygia_guttata
ENSSSCG00000008445	SRBD1	98	50.962	ENSTRUG00000007080	si:ch211-117n7.8	95	56.636	Takifugu_rubripes
ENSSSCG00000008445	SRBD1	98	50.440	ENSTNIG00000007464	si:ch211-117n7.8	99	50.147	Tetraodon_nigroviridis
ENSSSCG00000008445	SRBD1	78	100.000	ENSTBEG00000004556	SRBD1	76	100.000	Tupaia_belangeri
ENSSSCG00000008445	SRBD1	98	95.392	ENSTTRG00000011871	SRBD1	94	95.392	Tursiops_truncatus
ENSSSCG00000008445	SRBD1	99	92.700	ENSUAMG00000008126	SRBD1	97	96.390	Ursus_americanus
ENSSSCG00000008445	SRBD1	100	92.695	ENSUMAG00000012902	SRBD1	100	92.300	Ursus_maritimus
ENSSSCG00000008445	SRBD1	90	95.044	ENSVPAG00000006825	SRBD1	100	95.044	Vicugna_pacos
ENSSSCG00000008445	SRBD1	100	92.688	ENSVVUG00000005389	SRBD1	99	95.570	Vulpes_vulpes
ENSSSCG00000008445	SRBD1	98	57.258	ENSXETG00000002760	srbd1	100	51.862	Xenopus_tropicalis
ENSSSCG00000008445	SRBD1	97	51.045	ENSXMAG00000016861	si:ch211-117n7.8	97	51.460	Xiphophorus_maculatus