EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000009067 (Gene tree)
Gene ID: -
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 1112 bases
Position: chr8:92234403-92235514
Accession: 100627820
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000057118	RRM_5	PF13893.6	2.7e-12	1	2
ENSSSCP00000057118	RRM_5	PF13893.6	2.7e-12	2	2
ENSSSCP00000057118	RRM_1	PF00076.22	1e-73	1	4
ENSSSCP00000057118	RRM_1	PF00076.22	1e-73	2	4
ENSSSCP00000057118	RRM_1	PF00076.22	1e-73	3	4
ENSSSCP00000057118	RRM_1	PF00076.22	1e-73	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000009932	PABPC4L-201	1026	XM_021101590	ENSSSCP00000057118	341 (aa)	XP_020957249	A0A287BKJ3

Gene Model

Click here to download ENSSSCG00000009067's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000009067's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000009067	PABPC4L	54	36.000	ENSSSCG00000013476	CELF5	61	36.000
ENSSSCG00000009067	PABPC4L	54	32.558	ENSSSCG00000001928	-	53	32.558
ENSSSCG00000009067	PABPC4L	65	40.278	ENSSSCG00000013427	CIRBP	63	39.062
ENSSSCG00000009067	PABPC4L	99	59.459	ENSSSCG00000007382	PABPC1L	63	59.459
ENSSSCG00000009067	PABPC4L	52	39.437	ENSSSCG00000004661	MYEF2	61	33.735
ENSSSCG00000009067	PABPC4L	99	34.074	ENSSSCG00000006665	-	59	32.447
ENSSSCG00000009067	PABPC4L	94	51.282	ENSSSCG00000036336	-	98	51.282
ENSSSCG00000009067	PABPC4L	99	68.919	ENSSSCG00000003660	-	61	68.919
ENSSSCG00000009067	PABPC4L	92	37.578	ENSSSCG00000036199	-	56	37.578
ENSSSCG00000009067	PABPC4L	99	64.595	ENSSSCG00000006063	PABPC1	72	64.595
ENSSSCG00000009067	PABPC4L	67	42.308	ENSSSCG00000021591	-	91	47.619
ENSSSCG00000009067	PABPC4L	98	30.864	ENSSSCG00000005130	ELAVL2	97	30.864
ENSSSCG00000009067	PABPC4L	97	57.584	ENSSSCG00000040194	PABPC5	96	57.692
ENSSSCG00000009067	PABPC4L	94	51.282	ENSSSCG00000032167	-	98	51.282

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000009067	PABPC4L	99	84.282	ENSG00000254535	PABPC4L	99	84.282	Homo_sapiens
ENSSSCG00000009067	PABPC4L	99	81.301	ENSANAG00000017199	PABPC4L	87	81.301	Aotus_nancymaae
ENSSSCG00000009067	PABPC4L	100	89.189	ENSBTAG00000046902	PABPC4L	100	89.189	Bos_taurus
ENSSSCG00000009067	PABPC4L	99	81.572	ENSCJAG00000045332	PABPC4L	87	81.572	Callithrix_jacchus
ENSSSCG00000009067	PABPC4L	99	68.207	ENSCAFG00020019182	-	55	68.207	Canis_lupus_dingo
ENSSSCG00000009067	PABPC4L	100	88.919	ENSCHIG00000007231	PABPC4L	100	88.919	Capra_hircus
ENSSSCG00000009067	PABPC4L	97	73.353	ENSCAPG00000000555	PABPC4L	100	73.353	Cavia_aperea
ENSSSCG00000009067	PABPC4L	99	70.732	ENSCPOG00000033167	PABPC4L	100	70.732	Cavia_porcellus
ENSSSCG00000009067	PABPC4L	99	81.572	ENSCCAG00000031681	PABPC4L	87	81.572	Cebus_capucinus
ENSSSCG00000009067	PABPC4L	99	75.881	ENSCLAG00000017628	PABPC4L	99	75.881	Chinchilla_lanigera
ENSSSCG00000009067	PABPC4L	99	81.843	ENSCANG00000037677	PABPC4L	99	81.843	Colobus_angolensis_palliatus
ENSSSCG00000009067	PABPC4L	99	75.068	ENSCGRG00001002070	Pabpc4l	99	75.068	Cricetulus_griseus_chok1gshd
ENSSSCG00000009067	PABPC4L	99	75.068	ENSCGRG00000020086	Pabpc4l	99	75.068	Cricetulus_griseus_crigri
ENSSSCG00000009067	PABPC4L	99	84.553	ENSDNOG00000031077	PABPC4L	95	84.553	Dasypus_novemcinctus
ENSSSCG00000009067	PABPC4L	100	86.757	ENSEASG00005007883	PABPC4L	100	86.757	Equus_asinus_asinus
ENSSSCG00000009067	PABPC4L	100	87.297	ENSECAG00000031416	PABPC4L	100	87.297	Equus_caballus
ENSSSCG00000009067	PABPC4L	100	87.568	ENSFCAG00000028270	PABPC4L	100	87.568	Felis_catus
ENSSSCG00000009067	PABPC4L	100	74.054	ENSFDAG00000019606	PABPC4L	100	74.054	Fukomys_damarensis
ENSSSCG00000009067	PABPC4L	99	83.740	ENSGGOG00000024991	PABPC4L	99	83.740	Gorilla_gorilla
ENSSSCG00000009067	PABPC4L	100	74.865	ENSHGLG00000020104	PABPC4L	100	74.865	Heterocephalus_glaber_female
ENSSSCG00000009067	PABPC4L	100	74.865	ENSHGLG00100020648	PABPC4L	100	74.865	Heterocephalus_glaber_male
ENSSSCG00000009067	PABPC4L	99	78.919	ENSSTOG00000019472	PABPC4L	99	78.919	Ictidomys_tridecemlineatus
ENSSSCG00000009067	PABPC4L	100	75.135	ENSJJAG00000004090	Pabpc4l	100	75.135	Jaculus_jaculus
ENSSSCG00000009067	PABPC4L	99	74.526	ENSMAUG00000016313	Pabpc4l	99	74.526	Mesocricetus_auratus
ENSSSCG00000009067	PABPC4L	99	83.740	ENSMICG00000029683	PABPC4L	99	83.740	Microcebus_murinus
ENSSSCG00000009067	PABPC4L	99	75.610	ENSMOCG00000007551	Pabpc4l	99	75.610	Microtus_ochrogaster
ENSSSCG00000009067	PABPC4L	99	72.900	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.000	Mus_caroli
ENSSSCG00000009067	PABPC4L	99	73.171	ENSMUSG00000090919	Pabpc4l	100	80.000	Mus_musculus
ENSSSCG00000009067	PABPC4L	99	73.442	MGP_PahariEiJ_G0026409	Pabpc4l	100	78.000	Mus_pahari
ENSSSCG00000009067	PABPC4L	99	72.900	MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.000	Mus_spretus
ENSSSCG00000009067	PABPC4L	99	75.068	ENSMLUG00000008254	PABPC4L	99	75.068	Myotis_lucifugus
ENSSSCG00000009067	PABPC4L	99	78.591	ENSNGAG00000001502	Pabpc4l	99	78.591	Nannospalax_galili
ENSSSCG00000009067	PABPC4L	99	84.011	ENSNLEG00000019300	PABPC4L	99	84.011	Nomascus_leucogenys
ENSSSCG00000009067	PABPC4L	99	86.000	ENSOGAG00000026166	PABPC4L	99	86.000	Otolemur_garnettii
ENSSSCG00000009067	PABPC4L	96	82.972	ENSPPAG00000043745	PABPC4L	92	82.972	Pan_paniscus
ENSSSCG00000009067	PABPC4L	100	87.027	ENSPPRG00000018628	PABPC4L	100	87.027	Panthera_pardus
ENSSSCG00000009067	PABPC4L	100	87.568	ENSPTIG00000010106	PABPC4L	100	87.568	Panthera_tigris_altaica
ENSSSCG00000009067	PABPC4L	96	82.972	ENSPTRG00000045513	-	77	82.972	Pan_troglodytes
ENSSSCG00000009067	PABPC4L	99	74.797	ENSPEMG00000012565	Pabpc4l	99	74.797	Peromyscus_maniculatus_bairdii
ENSSSCG00000009067	PABPC4L	99	84.011	ENSPCOG00000025578	PABPC4L	99	84.011	Propithecus_coquereli
ENSSSCG00000009067	PABPC4L	99	73.713	ENSRNOG00000029749	Pabpc4l	99	73.713	Rattus_norvegicus
ENSSSCG00000009067	PABPC4L	99	81.030	ENSRBIG00000030229	PABPC4L	99	81.030	Rhinopithecus_bieti
ENSSSCG00000009067	PABPC4L	99	80.759	ENSRROG00000020367	PABPC4L	99	80.759	Rhinopithecus_roxellana
ENSSSCG00000009067	PABPC4L	99	80.217	ENSSBOG00000016382	PABPC4L	99	80.217	Saimiri_boliviensis_boliviensis
ENSSSCG00000009067	PABPC4L	100	87.027	ENSUAMG00000001289	PABPC4L	100	87.027	Ursus_americanus
ENSSSCG00000009067	PABPC4L	100	87.027	ENSUMAG00000014887	PABPC4L	100	87.027	Ursus_maritimus
ENSSSCG00000009067	PABPC4L	88	62.195	ENSVVUG00000011060	-	75	62.195	Vulpes_vulpes