EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000009137 (Gene tree)
Gene ID: 100516629
Gene Symbol: GAR1
Alias: NOLA1
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 9902 bases
Position: chr8:112403756-112413657
Accession: 100516629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000009743	Gar1	PF04410.14	6.2e-39	1	1
ENSSSCP00000028209	Gar1	PF04410.14	6.7e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000022770	GAR1-201	627	-	ENSSSCP00000028209	208 (aa)	-	I3LVQ6
ENSSSCT00000010005	GAR1-202	609	XM_003129252	ENSSSCP00000009743	202 (aa)	XP_003129300	F1S134

Gene Model

Click here to download ENSSSCG00000009137's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000009137's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000009137	GAR1	54	99.083	ENSG00000109534	GAR1	77	88.690	Homo_sapiens
ENSSSCG00000009137	GAR1	53	94.393	ENSAPOG00000019754	gar1	52	92.727	Acanthochromis_polyacanthus
ENSSSCG00000009137	GAR1	99	96.154	ENSAMEG00000004605	GAR1	54	98.182	Ailuropoda_melanoleuca
ENSSSCG00000009137	GAR1	53	94.393	ENSAOCG00000020947	gar1	50	94.393	Amphiprion_ocellaris
ENSSSCG00000009137	GAR1	53	94.393	ENSAPEG00000001676	gar1	50	94.393	Amphiprion_percula
ENSSSCG00000009137	GAR1	53	94.393	ENSATEG00000003733	gar1	57	89.256	Anabas_testudineus
ENSSSCG00000009137	GAR1	52	89.623	ENSAPLG00000010926	GAR1	60	88.889	Anas_platyrhynchos
ENSSSCG00000009137	GAR1	52	91.509	ENSACAG00000010031	GAR1	51	90.741	Anolis_carolinensis
ENSSSCG00000009137	GAR1	54	99.083	ENSANAG00000021608	GAR1	77	88.690	Aotus_nancymaae
ENSSSCG00000009137	GAR1	54	87.273	ENSAMXG00000015752	gar1	77	84.173	Astyanax_mexicanus
ENSSSCG00000009137	GAR1	100	98.558	ENSBTAG00000000748	GAR1	99	98.551	Bos_taurus
ENSSSCG00000009137	GAR1	54	99.083	ENSCJAG00000004041	GAR1	77	88.690	Callithrix_jacchus
ENSSSCG00000009137	GAR1	71	90.604	ENSCAFG00000011503	GAR1	60	90.604	Canis_familiaris
ENSSSCG00000009137	GAR1	89	97.312	ENSCAFG00020015566	GAR1	96	97.312	Canis_lupus_dingo
ENSSSCG00000009137	GAR1	100	97.608	ENSCHIG00000016026	-	98	97.608	Capra_hircus
ENSSSCG00000009137	GAR1	62	92.248	ENSCHIG00000011049	-	67	87.313	Capra_hircus
ENSSSCG00000009137	GAR1	76	83.117	ENSTSYG00000026632	-	56	90.909	Carlito_syrichta
ENSSSCG00000009137	GAR1	54	99.083	ENSTSYG00000013668	-	78	88.485	Carlito_syrichta
ENSSSCG00000009137	GAR1	54	100.000	ENSCPOG00000004216	GAR1	51	100.000	Cavia_porcellus
ENSSSCG00000009137	GAR1	54	99.083	ENSCCAG00000029372	GAR1	77	88.690	Cebus_capucinus
ENSSSCG00000009137	GAR1	54	99.091	ENSCATG00000021854	GAR1	56	99.091	Cercocebus_atys
ENSSSCG00000009137	GAR1	54	98.182	ENSCLAG00000005335	GAR1	69	98.182	Chinchilla_lanigera
ENSSSCG00000009137	GAR1	53	99.065	ENSCSAG00000003922	GAR1	56	99.091	Chlorocebus_sabaeus
ENSSSCG00000009137	GAR1	57	98.276	ENSCHOG00000007484	-	51	98.276	Choloepus_hoffmanni
ENSSSCG00000009137	GAR1	51	97.087	ENSCHOG00000012404	-	76	84.483	Choloepus_hoffmanni
ENSSSCG00000009137	GAR1	82	87.903	ENSCPBG00000004310	GAR1	79	90.164	Chrysemys_picta_bellii
ENSSSCG00000009137	GAR1	54	98.182	ENSCANG00000039262	GAR1	51	98.182	Colobus_angolensis_palliatus
ENSSSCG00000009137	GAR1	54	95.413	ENSCGRG00001003919	Gar1	50	95.455	Cricetulus_griseus_chok1gshd
ENSSSCG00000009137	GAR1	53	93.458	ENSCSEG00000003525	gar1	50	91.818	Cynoglossus_semilaevis
ENSSSCG00000009137	GAR1	53	93.458	ENSCVAG00000002103	gar1	53	91.818	Cyprinodon_variegatus
ENSSSCG00000009137	GAR1	53	91.589	ENSDARG00000076526	gar1	52	88.793	Danio_rerio
ENSSSCG00000009137	GAR1	54	98.165	ENSDNOG00000037632	GAR1	56	98.182	Dasypus_novemcinctus
ENSSSCG00000009137	GAR1	55	96.396	ENSDORG00000000482	Gar1	51	96.364	Dipodomys_ordii
ENSSSCG00000009137	GAR1	51	59.615	FBgn0011824	CG4038	70	57.692	Drosophila_melanogaster
ENSSSCG00000009137	GAR1	100	95.735	ENSEASG00005004658	GAR1	98	95.735	Equus_asinus_asinus
ENSSSCG00000009137	GAR1	100	96.209	ENSECAG00000013624	GAR1	98	96.209	Equus_caballus
ENSSSCG00000009137	GAR1	91	56.287	ENSFCAG00000025841	-	57	63.866	Felis_catus
ENSSSCG00000009137	GAR1	99	97.596	ENSFCAG00000040791	-	99	97.596	Felis_catus
ENSSSCG00000009137	GAR1	52	92.453	ENSFALG00000006445	GAR1	66	80.556	Ficedula_albicollis
ENSSSCG00000009137	GAR1	55	90.991	ENSFHEG00000008068	gar1	50	92.523	Fundulus_heteroclitus
ENSSSCG00000009137	GAR1	61	82.258	ENSGAGG00000004393	GAR1	62	89.344	Gopherus_agassizii
ENSSSCG00000009137	GAR1	55	80.180	ENSGGOG00000036205	-	54	80.734	Gorilla_gorilla
ENSSSCG00000009137	GAR1	54	98.165	ENSGGOG00000008681	GAR1	77	88.095	Gorilla_gorilla
ENSSSCG00000009137	GAR1	62	89.683	ENSHBUG00000023860	gar1	70	84.672	Haplochromis_burtoni
ENSSSCG00000009137	GAR1	99	93.237	ENSHGLG00000000493	GAR1	96	98.630	Heterocephalus_glaber_female
ENSSSCG00000009137	GAR1	54	90.000	ENSIPUG00000003194	gar1	51	91.589	Ictalurus_punctatus
ENSSSCG00000009137	GAR1	54	96.330	ENSSTOG00000005577	GAR1	71	96.364	Ictidomys_tridecemlineatus
ENSSSCG00000009137	GAR1	55	89.189	ENSKMAG00000010402	gar1	69	83.448	Kryptolebias_marmoratus
ENSSSCG00000009137	GAR1	75	86.607	ENSLACG00000003306	GAR1	65	87.037	Latimeria_chalumnae
ENSSSCG00000009137	GAR1	53	83.333	ENSMFAG00000003572	-	54	81.818	Macaca_fascicularis
ENSSSCG00000009137	GAR1	54	99.091	ENSMFAG00000024592	GAR1	51	99.091	Macaca_fascicularis
ENSSSCG00000009137	GAR1	54	99.091	ENSMMUG00000021225	GAR1	51	99.091	Macaca_mulatta
ENSSSCG00000009137	GAR1	54	99.091	ENSMNEG00000042594	GAR1	51	99.091	Macaca_nemestrina
ENSSSCG00000009137	GAR1	54	99.091	ENSMLEG00000002496	GAR1	50	99.091	Mandrillus_leucophaeus
ENSSSCG00000009137	GAR1	54	95.413	ENSMAUG00000016788	Gar1	70	98.182	Mesocricetus_auratus
ENSSSCG00000009137	GAR1	68	97.163	ENSMICG00000003326	GAR1	51	98.182	Microcebus_murinus
ENSSSCG00000009137	GAR1	54	95.413	ENSMOCG00000001340	Gar1	70	100.000	Microtus_ochrogaster
ENSSSCG00000009137	GAR1	53	95.327	ENSMMOG00000004156	gar1	52	95.327	Mola_mola
ENSSSCG00000009137	GAR1	56	89.474	ENSMODG00000005897	GAR1	70	71.084	Monodelphis_domestica
ENSSSCG00000009137	GAR1	53	92.523	ENSMALG00000009672	gar1	50	92.523	Monopterus_albus
ENSSSCG00000009137	GAR1	54	95.413	MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	Mus_caroli
ENSSSCG00000009137	GAR1	54	95.455	ENSMUSG00000028010	Gar1	70	100.000	Mus_musculus
ENSSSCG00000009137	GAR1	54	97.273	MGP_PahariEiJ_G0027076	Gar1	90	86.826	Mus_pahari
ENSSSCG00000009137	GAR1	54	95.455	MGP_SPRETEiJ_G0026580	Gar1	70	100.000	Mus_spretus
ENSSSCG00000009137	GAR1	99	97.596	ENSMPUG00000008615	GAR1	99	97.596	Mustela_putorius_furo
ENSSSCG00000009137	GAR1	54	99.083	ENSMLUG00000003776	GAR1	99	92.308	Myotis_lucifugus
ENSSSCG00000009137	GAR1	54	97.273	ENSNGAG00000008268	Gar1	99	96.053	Nannospalax_galili
ENSSSCG00000009137	GAR1	68	87.591	ENSNBRG00000014828	gar1	63	84.722	Neolamprologus_brichardi
ENSSSCG00000009137	GAR1	54	99.091	ENSNLEG00000016578	GAR1	51	99.091	Nomascus_leucogenys
ENSSSCG00000009137	GAR1	55	82.883	ENSNLEG00000034282	-	56	82.727	Nomascus_leucogenys
ENSSSCG00000009137	GAR1	53	99.065	ENSODEG00000011083	GAR1	57	98.182	Octodon_degus
ENSSSCG00000009137	GAR1	53	94.393	ENSONIG00000001085	gar1	50	92.727	Oreochromis_niloticus
ENSSSCG00000009137	GAR1	52	95.283	ENSOANG00000003665	GAR1	78	78.736	Ornithorhynchus_anatinus
ENSSSCG00000009137	GAR1	54	98.165	ENSOCUG00000003901	GAR1	51	98.182	Oryctolagus_cuniculus
ENSSSCG00000009137	GAR1	53	94.393	ENSORLG00000020583	gar1	50	92.727	Oryzias_latipes
ENSSSCG00000009137	GAR1	53	94.393	ENSORLG00020008602	gar1	50	92.727	Oryzias_latipes_hni
ENSSSCG00000009137	GAR1	53	94.393	ENSORLG00015017643	gar1	50	92.727	Oryzias_latipes_hsok
ENSSSCG00000009137	GAR1	54	98.165	ENSOGAG00000004693	GAR1	52	98.182	Otolemur_garnettii
ENSSSCG00000009137	GAR1	99	97.596	ENSOARG00000004910	GAR1	99	97.596	Ovis_aries
ENSSSCG00000009137	GAR1	54	99.083	ENSPPAG00000014081	GAR1	84	88.690	Pan_paniscus
ENSSSCG00000009137	GAR1	99	97.596	ENSPPRG00000023697	GAR1	99	97.596	Panthera_pardus
ENSSSCG00000009137	GAR1	99	97.596	ENSPTIG00000021565	GAR1	99	97.596	Panthera_tigris_altaica
ENSSSCG00000009137	GAR1	54	99.091	ENSPTRG00000016364	GAR1	85	88.690	Pan_troglodytes
ENSSSCG00000009137	GAR1	81	81.651	ENSPTRG00000049340	-	51	80.556	Pan_troglodytes
ENSSSCG00000009137	GAR1	54	99.091	ENSPANG00000000639	GAR1	77	88.095	Papio_anubis
ENSSSCG00000009137	GAR1	52	93.396	ENSPKIG00000018991	gar1	63	86.429	Paramormyrops_kingsleyae
ENSSSCG00000009137	GAR1	52	92.453	ENSPSIG00000002970	GAR1	50	90.909	Pelodiscus_sinensis
ENSSSCG00000009137	GAR1	54	95.413	ENSPEMG00000015838	Gar1	70	98.182	Peromyscus_maniculatus_bairdii
ENSSSCG00000009137	GAR1	53	92.523	ENSPFOG00000024155	gar1	51	92.523	Poecilia_formosa
ENSSSCG00000009137	GAR1	53	92.523	ENSPLAG00000015056	gar1	51	92.523	Poecilia_latipinna
ENSSSCG00000009137	GAR1	53	93.458	ENSPMEG00000009320	gar1	53	91.818	Poecilia_mexicana
ENSSSCG00000009137	GAR1	54	99.083	ENSPPYG00000014996	GAR1	77	88.690	Pongo_abelii
ENSSSCG00000009137	GAR1	53	99.065	ENSPCOG00000027049	GAR1	56	99.091	Propithecus_coquereli
ENSSSCG00000009137	GAR1	69	86.429	ENSPNYG00000020926	gar1	71	83.673	Pundamilia_nyererei
ENSSSCG00000009137	GAR1	54	96.364	ENSRNOG00000061146	Gar1	64	96.364	Rattus_norvegicus
ENSSSCG00000009137	GAR1	55	81.250	ENSRBIG00000042411	-	53	80.909	Rhinopithecus_bieti
ENSSSCG00000009137	GAR1	53	99.065	ENSRBIG00000019547	GAR1	56	99.091	Rhinopithecus_bieti
ENSSSCG00000009137	GAR1	54	99.091	ENSRROG00000028454	GAR1	56	99.091	Rhinopithecus_roxellana
ENSSSCG00000009137	GAR1	55	81.250	ENSRROG00000044348	-	53	80.909	Rhinopithecus_roxellana
ENSSSCG00000009137	GAR1	54	99.083	ENSSBOG00000024785	GAR1	51	99.091	Saimiri_boliviensis_boliviensis
ENSSSCG00000009137	GAR1	53	91.589	ENSSMAG00000009976	gar1	50	90.000	Scophthalmus_maximus
ENSSSCG00000009137	GAR1	53	93.458	ENSSLDG00000023264	gar1	52	91.818	Seriola_lalandi_dorsalis
ENSSSCG00000009137	GAR1	52	93.396	ENSSPUG00000008707	GAR1	61	91.818	Sphenodon_punctatus
ENSSSCG00000009137	GAR1	53	90.654	ENSTRUG00000020580	gar1	64	84.211	Takifugu_rubripes
ENSSSCG00000009137	GAR1	51	93.269	ENSTNIG00000013023	gar1	63	91.818	Tetraodon_nigroviridis
ENSSSCG00000009137	GAR1	65	91.367	ENSTTRG00000016318	GAR1	57	91.367	Tursiops_truncatus
ENSSSCG00000009137	GAR1	89	96.774	ENSUAMG00000005652	GAR1	96	96.774	Ursus_americanus
ENSSSCG00000009137	GAR1	99	96.552	ENSUMAG00000000776	GAR1	99	96.552	Ursus_maritimus
ENSSSCG00000009137	GAR1	99	98.558	ENSVPAG00000009844	GAR1	87	98.558	Vicugna_pacos
ENSSSCG00000009137	GAR1	100	96.209	ENSVVUG00000017612	GAR1	99	96.190	Vulpes_vulpes