EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000009540 (Gene tree)
Gene ID: 100155891
Gene Symbol: LIG4
Alias: -
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 7995 bases
Position: chr11:75537039-75545033
Accession: 100155891
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000010186	RNA_ligase	PF09414.10	8e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000010458	LIG4-201	4738	XM_003131089	ENSSSCP00000010186	910 (aa)	XP_003131137	F1RLP1

Gene Model

Click here to download ENSSSCG00000009540's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000009540's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000009540	LIG4	100	88.804	ENSG00000174405	LIG4	100	88.863	Homo_sapiens
ENSSSCG00000009540	LIG4	99	64.906	ENSAPOG00000000866	lig4	99	65.237	Acanthochromis_polyacanthus
ENSSSCG00000009540	LIG4	100	87.816	ENSAMEG00000019685	LIG4	99	87.816	Ailuropoda_melanoleuca
ENSSSCG00000009540	LIG4	99	65.601	ENSACIG00000018309	lig4	99	65.932	Amphilophus_citrinellus
ENSSSCG00000009540	LIG4	99	64.906	ENSAOCG00000011768	lig4	99	65.237	Amphiprion_ocellaris
ENSSSCG00000009540	LIG4	99	65.017	ENSAPEG00000017815	lig4	99	65.347	Amphiprion_percula
ENSSSCG00000009540	LIG4	99	65.017	ENSATEG00000005583	lig4	99	65.237	Anabas_testudineus
ENSSSCG00000009540	LIG4	97	74.943	ENSAPLG00000001673	LIG4	99	74.943	Anas_platyrhynchos
ENSSSCG00000009540	LIG4	99	75.055	ENSACAG00000014566	LIG4	99	75.055	Anolis_carolinensis
ENSSSCG00000009540	LIG4	100	87.377	ENSANAG00000012446	LIG4	100	87.377	Aotus_nancymaae
ENSSSCG00000009540	LIG4	99	65.160	ENSACLG00000027051	lig4	99	65.160	Astatotilapia_calliptera
ENSSSCG00000009540	LIG4	99	63.886	ENSAMXG00000008192	lig4	94	63.886	Astyanax_mexicanus
ENSSSCG00000009540	LIG4	100	89.133	ENSBTAG00000015868	LIG4	100	89.133	Bos_taurus
ENSSSCG00000009540	LIG4	100	86.828	ENSCJAG00000014689	LIG4	100	86.828	Callithrix_jacchus
ENSSSCG00000009540	LIG4	100	89.023	ENSCAFG00000006031	LIG4	100	89.023	Canis_familiaris
ENSSSCG00000009540	LIG4	100	89.023	ENSCAFG00020021230	LIG4	100	89.023	Canis_lupus_dingo
ENSSSCG00000009540	LIG4	100	88.584	ENSCHIG00000001019	LIG4	100	88.584	Capra_hircus
ENSSSCG00000009540	LIG4	99	85.271	ENSCAPG00000006284	LIG4	99	85.271	Cavia_aperea
ENSSSCG00000009540	LIG4	100	85.071	ENSCPOG00000014266	LIG4	100	85.071	Cavia_porcellus
ENSSSCG00000009540	LIG4	100	87.047	ENSCCAG00000019971	LIG4	100	87.047	Cebus_capucinus
ENSSSCG00000009540	LIG4	100	88.145	ENSCATG00000021075	LIG4	100	88.145	Cercocebus_atys
ENSSSCG00000009540	LIG4	100	86.389	ENSCLAG00000003376	LIG4	100	86.389	Chinchilla_lanigera
ENSSSCG00000009540	LIG4	100	88.364	ENSCSAG00000000211	LIG4	100	88.364	Chlorocebus_sabaeus
ENSSSCG00000009540	LIG4	99	77.459	ENSCPBG00000023291	LIG4	99	77.058	Chrysemys_picta_bellii
ENSSSCG00000009540	LIG4	69	45.827	ENSCING00000009536	-	94	45.968	Ciona_intestinalis
ENSSSCG00000009540	LIG4	83	45.921	ENSCSAVG00000010336	-	98	45.921	Ciona_savignyi
ENSSSCG00000009540	LIG4	100	87.925	ENSCANG00000005805	LIG4	100	87.925	Colobus_angolensis_palliatus
ENSSSCG00000009540	LIG4	99	84.615	ENSCGRG00001012072	Lig4	99	84.615	Cricetulus_griseus_chok1gshd
ENSSSCG00000009540	LIG4	99	84.615	ENSCGRG00000013417	Lig4	99	84.615	Cricetulus_griseus_crigri
ENSSSCG00000009540	LIG4	97	65.415	ENSCSEG00000013905	lig4	95	65.415	Cynoglossus_semilaevis
ENSSSCG00000009540	LIG4	99	65.011	ENSCVAG00000007896	lig4	99	65.011	Cyprinodon_variegatus
ENSSSCG00000009540	LIG4	99	63.263	ENSDARG00000060620	lig4	98	63.263	Danio_rerio
ENSSSCG00000009540	LIG4	100	86.952	ENSDNOG00000000513	LIG4	100	86.952	Dasypus_novemcinctus
ENSSSCG00000009540	LIG4	100	84.962	ENSDORG00000027303	Lig4	100	84.962	Dipodomys_ordii
ENSSSCG00000009540	LIG4	89	31.449	FBgn0030506	Lig4	90	31.449	Drosophila_melanogaster
ENSSSCG00000009540	LIG4	99	83.149	ENSETEG00000015563	LIG4	100	83.149	Echinops_telfairi
ENSSSCG00000009540	LIG4	99	42.316	ENSEBUG00000014243	lig4	99	42.316	Eptatretus_burgeri
ENSSSCG00000009540	LIG4	100	88.913	ENSEASG00005022073	LIG4	100	88.913	Equus_asinus_asinus
ENSSSCG00000009540	LIG4	100	88.474	ENSECAG00000003257	LIG4	100	88.474	Equus_caballus
ENSSSCG00000009540	LIG4	99	65.088	ENSELUG00000006787	lig4	99	64.758	Esox_lucius
ENSSSCG00000009540	LIG4	100	87.596	ENSFCAG00000031985	LIG4	100	87.596	Felis_catus
ENSSSCG00000009540	LIG4	89	75.646	ENSFALG00000004214	LIG4	98	75.646	Ficedula_albicollis
ENSSSCG00000009540	LIG4	100	85.730	ENSFDAG00000008973	LIG4	100	85.730	Fukomys_damarensis
ENSSSCG00000009540	LIG4	99	64.609	ENSFHEG00000007398	lig4	90	64.609	Fundulus_heteroclitus
ENSSSCG00000009540	LIG4	85	64.313	ENSGMOG00000012843	lig4	99	64.313	Gadus_morhua
ENSSSCG00000009540	LIG4	99	75.000	ENSGALG00000016854	LIG4	99	75.000	Gallus_gallus
ENSSSCG00000009540	LIG4	97	65.350	ENSGAFG00000019779	lig4	94	65.329	Gambusia_affinis
ENSSSCG00000009540	LIG4	99	62.788	ENSGACG00000014135	lig4	99	63.053	Gasterosteus_aculeatus
ENSSSCG00000009540	LIG4	100	88.913	ENSGGOG00000027771	LIG4	100	88.913	Gorilla_gorilla
ENSSSCG00000009540	LIG4	99	64.939	ENSHBUG00000006245	lig4	99	64.939	Haplochromis_burtoni
ENSSSCG00000009540	LIG4	100	86.608	ENSHGLG00000000718	LIG4	100	86.608	Heterocephalus_glaber_female
ENSSSCG00000009540	LIG4	100	86.608	ENSHGLG00100003265	LIG4	100	86.608	Heterocephalus_glaber_male
ENSSSCG00000009540	LIG4	99	63.846	ENSHCOG00000012010	lig4	99	63.846	Hippocampus_comes
ENSSSCG00000009540	LIG4	99	65.055	ENSIPUG00000013748	lig4	99	64.906	Ictalurus_punctatus
ENSSSCG00000009540	LIG4	100	86.498	ENSSTOG00000024303	LIG4	100	86.498	Ictidomys_tridecemlineatus
ENSSSCG00000009540	LIG4	99	85.919	ENSJJAG00000006750	Lig4	99	85.919	Jaculus_jaculus
ENSSSCG00000009540	LIG4	99	64.778	ENSKMAG00000001149	lig4	98	64.778	Kryptolebias_marmoratus
ENSSSCG00000009540	LIG4	91	65.223	ENSLBEG00000014578	lig4	100	65.584	Labrus_bergylta
ENSSSCG00000009540	LIG4	99	71.555	ENSLACG00000003282	LIG4	99	71.444	Latimeria_chalumnae
ENSSSCG00000009540	LIG4	99	69.417	ENSLOCG00000008901	lig4	98	69.417	Lepisosteus_oculatus
ENSSSCG00000009540	LIG4	100	86.199	ENSLAFG00000031152	LIG4	100	86.090	Loxodonta_africana
ENSSSCG00000009540	LIG4	100	88.255	ENSMFAG00000037235	LIG4	100	88.255	Macaca_fascicularis
ENSSSCG00000009540	LIG4	100	88.255	ENSMMUG00000008874	LIG4	100	88.255	Macaca_mulatta
ENSSSCG00000009540	LIG4	100	88.255	ENSMNEG00000023575	LIG4	100	88.255	Macaca_nemestrina
ENSSSCG00000009540	LIG4	100	87.925	ENSMLEG00000026720	LIG4	100	87.925	Mandrillus_leucophaeus
ENSSSCG00000009540	LIG4	99	64.906	ENSMAMG00000008472	lig4	99	65.237	Mastacembelus_armatus
ENSSSCG00000009540	LIG4	99	65.160	ENSMZEG00005001855	lig4	99	65.160	Maylandia_zebra
ENSSSCG00000009540	LIG4	99	74.753	ENSMGAG00000015532	LIG4	99	74.753	Meleagris_gallopavo
ENSSSCG00000009540	LIG4	99	82.398	ENSMOCG00000019000	Lig4	99	82.398	Microtus_ochrogaster
ENSSSCG00000009540	LIG4	99	64.191	ENSMMOG00000004390	lig4	99	64.191	Mola_mola
ENSSSCG00000009540	LIG4	100	83.004	ENSMODG00000025064	LIG4	100	83.004	Monodelphis_domestica
ENSSSCG00000009540	LIG4	99	65.078	ENSMALG00000008555	lig4	99	65.078	Monopterus_albus
ENSSSCG00000009540	LIG4	99	84.048	MGP_CAROLIEiJ_G0030809	Lig4	99	84.048	Mus_caroli
ENSSSCG00000009540	LIG4	99	83.828	ENSMUSG00000049717	Lig4	99	83.828	Mus_musculus
ENSSSCG00000009540	LIG4	99	83.828	MGP_PahariEiJ_G0021270	Lig4	99	83.828	Mus_pahari
ENSSSCG00000009540	LIG4	99	83.608	MGP_SPRETEiJ_G0031917	Lig4	99	83.608	Mus_spretus
ENSSSCG00000009540	LIG4	100	87.267	ENSMPUG00000018675	LIG4	100	87.267	Mustela_putorius_furo
ENSSSCG00000009540	LIG4	100	88.694	ENSMLUG00000001267	LIG4	100	88.694	Myotis_lucifugus
ENSSSCG00000009540	LIG4	99	85.479	ENSNGAG00000013258	Lig4	99	85.479	Nannospalax_galili
ENSSSCG00000009540	LIG4	99	65.160	ENSNBRG00000021252	lig4	99	65.160	Neolamprologus_brichardi
ENSSSCG00000009540	LIG4	100	88.035	ENSNLEG00000007888	LIG4	100	88.035	Nomascus_leucogenys
ENSSSCG00000009540	LIG4	99	85.039	ENSOPRG00000005765	LIG4	99	85.039	Ochotona_princeps
ENSSSCG00000009540	LIG4	100	84.962	ENSODEG00000019683	LIG4	100	84.962	Octodon_degus
ENSSSCG00000009540	LIG4	99	64.829	ENSONIG00000011969	lig4	98	65.160	Oreochromis_niloticus
ENSSSCG00000009540	LIG4	100	87.925	ENSOCUG00000015734	LIG4	100	87.925	Oryctolagus_cuniculus
ENSSSCG00000009540	LIG4	99	64.145	ENSORLG00000004041	lig4	99	63.846	Oryzias_latipes
ENSSSCG00000009540	LIG4	99	64.583	ENSORLG00020019607	lig4	99	64.474	Oryzias_latipes_hni
ENSSSCG00000009540	LIG4	99	64.254	ENSORLG00015017754	lig4	99	63.956	Oryzias_latipes_hsok
ENSSSCG00000009540	LIG4	74	69.778	ENSOMEG00000003459	lig4	98	69.778	Oryzias_melastigma
ENSSSCG00000009540	LIG4	100	86.952	ENSOGAG00000032120	LIG4	99	86.952	Otolemur_garnettii
ENSSSCG00000009540	LIG4	82	90.201	ENSOARG00000005590	LIG4	98	90.201	Ovis_aries
ENSSSCG00000009540	LIG4	100	88.364	ENSPPAG00000032998	LIG4	100	88.364	Pan_paniscus
ENSSSCG00000009540	LIG4	100	88.145	ENSPPRG00000017804	LIG4	100	88.145	Panthera_pardus
ENSSSCG00000009540	LIG4	100	88.255	ENSPTIG00000010051	LIG4	100	88.255	Panthera_tigris_altaica
ENSSSCG00000009540	LIG4	100	88.474	ENSPTRG00000006025	LIG4	100	88.474	Pan_troglodytes
ENSSSCG00000009540	LIG4	100	88.255	ENSPANG00000007562	LIG4	100	88.255	Papio_anubis
ENSSSCG00000009540	LIG4	99	66.117	ENSPKIG00000011645	lig4	98	66.117	Paramormyrops_kingsleyae
ENSSSCG00000009540	LIG4	99	77.338	ENSPSIG00000001504	LIG4	99	77.338	Pelodiscus_sinensis
ENSSSCG00000009540	LIG4	99	63.515	ENSPMGG00000013486	lig4	99	63.187	Periophthalmus_magnuspinnatus
ENSSSCG00000009540	LIG4	99	84.945	ENSPEMG00000000076	Lig4	99	84.945	Peromyscus_maniculatus_bairdii
ENSSSCG00000009540	LIG4	100	82.018	ENSPCIG00000021882	LIG4	100	81.798	Phascolarctos_cinereus
ENSSSCG00000009540	LIG4	99	65.145	ENSPFOG00000000797	lig4	99	64.796	Poecilia_formosa
ENSSSCG00000009540	LIG4	99	65.033	ENSPLAG00000001196	lig4	99	64.686	Poecilia_latipinna
ENSSSCG00000009540	LIG4	99	65.145	ENSPMEG00000021353	lig4	99	64.796	Poecilia_mexicana
ENSSSCG00000009540	LIG4	99	64.922	ENSPREG00000007323	lig4	99	64.576	Poecilia_reticulata
ENSSSCG00000009540	LIG4	100	88.584	ENSPPYG00000005540	LIG4	100	88.584	Pongo_abelii
ENSSSCG00000009540	LIG4	100	86.498	ENSPVAG00000016403	LIG4	100	86.498	Pteropus_vampyrus
ENSSSCG00000009540	LIG4	99	65.050	ENSPNYG00000009660	lig4	99	65.050	Pundamilia_nyererei
ENSSSCG00000009540	LIG4	99	64.066	ENSPNAG00000028069	LIG4	99	64.066	Pygocentrus_nattereri
ENSSSCG00000009540	LIG4	99	64.066	ENSPNAG00000028056	lig4	99	64.066	Pygocentrus_nattereri
ENSSSCG00000009540	LIG4	99	83.828	ENSRNOG00000014605	Lig4	99	83.828	Rattus_norvegicus
ENSSSCG00000009540	LIG4	100	86.718	ENSRBIG00000039962	LIG4	100	86.718	Rhinopithecus_bieti
ENSSSCG00000009540	LIG4	100	87.925	ENSRROG00000006040	LIG4	100	87.925	Rhinopithecus_roxellana
ENSSSCG00000009540	LIG4	100	87.047	ENSSBOG00000019029	LIG4	100	87.047	Saimiri_boliviensis_boliviensis
ENSSSCG00000009540	LIG4	100	78.618	ENSSHAG00000009525	LIG4	100	78.289	Sarcophilus_harrisii
ENSSSCG00000009540	LIG4	100	65.355	ENSSFOG00015012835	lig4	100	65.355	Scleropages_formosus
ENSSSCG00000009540	LIG4	99	62.639	ENSSMAG00000011267	lig4	99	62.639	Scophthalmus_maximus
ENSSSCG00000009540	LIG4	99	65.594	ENSSDUG00000010343	lig4	98	65.594	Seriola_dumerili
ENSSSCG00000009540	LIG4	99	63.806	ENSSLDG00000003239	lig4	99	63.806	Seriola_lalandi_dorsalis
ENSSSCG00000009540	LIG4	100	82.823	ENSSARG00000006573	LIG4	100	82.823	Sorex_araneus
ENSSSCG00000009540	LIG4	93	75.919	ENSSPUG00000002444	LIG4	100	75.919	Sphenodon_punctatus
ENSSSCG00000009540	LIG4	99	65.127	ENSSPAG00000001609	lig4	99	65.127	Stegastes_partitus
ENSSSCG00000009540	LIG4	99	74.614	ENSTGUG00000010795	LIG4	99	74.614	Taeniopygia_guttata
ENSSSCG00000009540	LIG4	99	63.837	ENSTRUG00000009984	lig4	99	63.837	Takifugu_rubripes
ENSSSCG00000009540	LIG4	99	64.576	ENSTNIG00000010348	lig4	99	64.576	Tetraodon_nigroviridis
ENSSSCG00000009540	LIG4	100	87.596	ENSTBEG00000017741	LIG4	100	87.596	Tupaia_belangeri
ENSSSCG00000009540	LIG4	99	89.109	ENSTTRG00000012660	LIG4	99	89.109	Tursiops_truncatus
ENSSSCG00000009540	LIG4	100	88.255	ENSUAMG00000003773	LIG4	100	88.255	Ursus_americanus
ENSSSCG00000009540	LIG4	99	70.166	ENSXETG00000002654	lig4	99	70.166	Xenopus_tropicalis
ENSSSCG00000009540	LIG4	99	64.365	ENSXCOG00000017401	lig4	99	64.246	Xiphophorus_couchianus
ENSSSCG00000009540	LIG4	99	65.072	ENSXMAG00000015142	lig4	99	64.725	Xiphophorus_maculatus