EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000009569 (Gene tree)
Gene ID: 100520511
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 65055 bases
Position: chr11:507036-572090
Accession: 100520511
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000010218	RRM_1	PF00076.22	1.9e-32	1	2
ENSSSCP00000010218	RRM_1	PF00076.22	1.9e-32	2	2
ENSSSCP00000032237	RRM_1	PF00076.22	4.8e-32	1	2
ENSSSCP00000032237	RRM_1	PF00076.22	4.8e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000057535	PSPC1-201	2032	XM_021065418	ENSSSCP00000032237	521 (aa)	XP_020921077	A0A286ZKW2
ENSSSCT00000010490	PSPC1-202	1167	XM_021065419	ENSSSCP00000010218	388 (aa)	XP_020921078	F1RN28

Gene Model

Click here to download ENSSSCG00000009569's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000009569's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000009569	PSPC1	89	60.173	ENSSSCG00000023245	NONO	77	69.337
ENSSSCG00000009569	PSPC1	84	73.089	ENSSSCG00000035690	SFPQ	54	68.852

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000009569	PSPC1	100	96.947	ENSG00000121390	PSPC1	100	96.947	Homo_sapiens
ENSSSCG00000009569	PSPC1	86	79.341	ENSAPOG00000015946	pspc1	79	73.721	Acanthochromis_polyacanthus
ENSSSCG00000009569	PSPC1	100	97.126	ENSAMEG00000017420	PSPC1	100	97.126	Ailuropoda_melanoleuca
ENSSSCG00000009569	PSPC1	99	64.631	ENSACIG00000018695	pspc1	87	59.448	Amphilophus_citrinellus
ENSSSCG00000009569	PSPC1	85	79.697	ENSAOCG00000005279	pspc1	78	73.256	Amphiprion_ocellaris
ENSSSCG00000009569	PSPC1	85	79.697	ENSAPEG00000015927	pspc1	79	73.256	Amphiprion_percula
ENSSSCG00000009569	PSPC1	85	67.576	ENSATEG00000004878	pspc1	76	62.651	Anabas_testudineus
ENSSSCG00000009569	PSPC1	77	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSSSCG00000009569	PSPC1	81	75.472	ENSAPLG00000003643	SFPQ	69	68.852	Anas_platyrhynchos
ENSSSCG00000009569	PSPC1	89	91.845	ENSACAG00000002093	PSPC1	88	92.060	Anolis_carolinensis
ENSSSCG00000009569	PSPC1	76	69.728	ENSACAG00000013307	-	55	66.384	Anolis_carolinensis
ENSSSCG00000009569	PSPC1	100	97.126	ENSANAG00000000059	PSPC1	100	97.126	Aotus_nancymaae
ENSSSCG00000009569	PSPC1	99	64.122	ENSACLG00000027220	pspc1	87	58.887	Astatotilapia_calliptera
ENSSSCG00000009569	PSPC1	83	79.635	ENSAMXG00000036881	pspc1	80	73.563	Astyanax_mexicanus
ENSSSCG00000009569	PSPC1	100	98.084	ENSBTAG00000003934	PSPC1	100	98.084	Bos_taurus
ENSSSCG00000009569	PSPC1	100	97.126	ENSCJAG00000004554	PSPC1	100	97.126	Callithrix_jacchus
ENSSSCG00000009569	PSPC1	100	97.318	ENSCAFG00020002009	PSPC1	100	97.318	Canis_lupus_dingo
ENSSSCG00000009569	PSPC1	100	98.084	ENSCHIG00000016708	PSPC1	100	98.084	Capra_hircus
ENSSSCG00000009569	PSPC1	77	92.040	ENSTSYG00000032882	PSPC1	93	85.748	Carlito_syrichta
ENSSSCG00000009569	PSPC1	100	97.121	ENSCPOG00000000395	PSPC1	100	97.121	Cavia_porcellus
ENSSSCG00000009569	PSPC1	100	97.126	ENSCCAG00000033498	PSPC1	100	97.126	Cebus_capucinus
ENSSSCG00000009569	PSPC1	100	96.756	ENSCATG00000036434	PSPC1	100	96.756	Cercocebus_atys
ENSSSCG00000009569	PSPC1	88	88.121	ENSCLAG00000005241	PSPC1	99	88.121	Chinchilla_lanigera
ENSSSCG00000009569	PSPC1	99	94.832	ENSCHOG00000008913	PSPC1	100	89.101	Choloepus_hoffmanni
ENSSSCG00000009569	PSPC1	99	87.287	ENSCPBG00000020859	PSPC1	99	86.907	Chrysemys_picta_bellii
ENSSSCG00000009569	PSPC1	79	58.442	ENSCSAVG00000003533	-	53	61.429	Ciona_savignyi
ENSSSCG00000009569	PSPC1	69	98.496	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSSSCG00000009569	PSPC1	100	95.992	ENSCGRG00001018368	Pspc1	100	95.211	Cricetulus_griseus_chok1gshd
ENSSSCG00000009569	PSPC1	100	95.992	ENSCGRG00000011724	Pspc1	100	95.211	Cricetulus_griseus_crigri
ENSSSCG00000009569	PSPC1	83	77.570	ENSCVAG00000007679	-	78	68.483	Cyprinodon_variegatus
ENSSSCG00000009569	PSPC1	99	72.021	ENSDARG00000006621	pspc1	100	67.874	Danio_rerio
ENSSSCG00000009569	PSPC1	100	94.847	ENSDNOG00000011078	PSPC1	100	95.220	Dasypus_novemcinctus
ENSSSCG00000009569	PSPC1	100	93.893	ENSDORG00000016050	Pspc1	100	93.511	Dipodomys_ordii
ENSSSCG00000009569	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSSSCG00000009569	PSPC1	77	46.154	ENSEBUG00000010133	pspc1	72	50.909	Eptatretus_burgeri
ENSSSCG00000009569	PSPC1	83	73.313	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSSSCG00000009569	PSPC1	100	97.126	ENSEASG00005000119	PSPC1	100	97.126	Equus_asinus_asinus
ENSSSCG00000009569	PSPC1	100	97.126	ENSECAG00000017286	PSPC1	100	97.126	Equus_caballus
ENSSSCG00000009569	PSPC1	88	84.112	ENSEEUG00000011288	-	88	82.555	Erinaceus_europaeus
ENSSSCG00000009569	PSPC1	98	72.959	ENSELUG00000003746	pspc1	80	81.325	Esox_lucius
ENSSSCG00000009569	PSPC1	100	97.510	ENSFCAG00000027841	PSPC1	100	97.510	Felis_catus
ENSSSCG00000009569	PSPC1	89	94.635	ENSFALG00000008750	PSPC1	99	86.867	Ficedula_albicollis
ENSSSCG00000009569	PSPC1	100	95.393	ENSFDAG00000002617	PSPC1	100	95.393	Fukomys_damarensis
ENSSSCG00000009569	PSPC1	74	82.639	ENSGMOG00000015074	pspc1	86	65.875	Gadus_morhua
ENSSSCG00000009569	PSPC1	99	87.311	ENSGALG00000017142	PSPC1	99	87.500	Gallus_gallus
ENSSSCG00000009569	PSPC1	99	68.514	ENSGAFG00000006327	pspc1	68	76.900	Gambusia_affinis
ENSSSCG00000009569	PSPC1	84	73.765	ENSGACG00000014901	pspc1	92	73.089	Gasterosteus_aculeatus
ENSSSCG00000009569	PSPC1	85	71.988	ENSGAGG00000017325	-	56	68.033	Gopherus_agassizii
ENSSSCG00000009569	PSPC1	99	87.097	ENSGAGG00000019164	PSPC1	99	86.717	Gopherus_agassizii
ENSSSCG00000009569	PSPC1	100	96.756	ENSGGOG00000003414	PSPC1	100	96.756	Gorilla_gorilla
ENSSSCG00000009569	PSPC1	99	70.663	ENSHBUG00000001139	pspc1	87	69.742	Haplochromis_burtoni
ENSSSCG00000009569	PSPC1	100	96.929	ENSHGLG00000018811	PSPC1	100	96.929	Heterocephalus_glaber_female
ENSSSCG00000009569	PSPC1	90	92.529	ENSHGLG00100007962	PSPC1	100	92.529	Heterocephalus_glaber_male
ENSSSCG00000009569	PSPC1	87	71.143	ENSHCOG00000013251	pspc1	83	69.786	Hippocampus_comes
ENSSSCG00000009569	PSPC1	99	73.265	ENSIPUG00000013192	pspc1	80	76.923	Ictalurus_punctatus
ENSSSCG00000009569	PSPC1	100	96.374	ENSSTOG00000026833	PSPC1	100	96.374	Ictidomys_tridecemlineatus
ENSSSCG00000009569	PSPC1	100	96.183	ENSJJAG00000018334	Pspc1	100	96.183	Jaculus_jaculus
ENSSSCG00000009569	PSPC1	88	55.508	ENSKMAG00000013525	-	84	54.194	Kryptolebias_marmoratus
ENSSSCG00000009569	PSPC1	89	75.723	ENSLBEG00000004474	pspc1	72	75.219	Labrus_bergylta
ENSSSCG00000009569	PSPC1	99	77.632	ENSLACG00000010762	PSPC1	88	85.313	Latimeria_chalumnae
ENSSSCG00000009569	PSPC1	99	78.077	ENSLOCG00000010832	pspc1	91	84.165	Lepisosteus_oculatus
ENSSSCG00000009569	PSPC1	100	95.019	ENSLAFG00000010968	PSPC1	100	95.594	Loxodonta_africana
ENSSSCG00000009569	PSPC1	100	96.947	ENSMFAG00000032728	PSPC1	100	96.947	Macaca_fascicularis
ENSSSCG00000009569	PSPC1	100	96.947	ENSMMUG00000020262	PSPC1	100	96.947	Macaca_mulatta
ENSSSCG00000009569	PSPC1	100	96.947	ENSMNEG00000027401	PSPC1	100	96.947	Macaca_nemestrina
ENSSSCG00000009569	PSPC1	84	99.248	ENSMLEG00000039043	PSPC1	100	100.000	Mandrillus_leucophaeus
ENSSSCG00000009569	PSPC1	84	77.778	ENSMAMG00000004333	pspc1	77	71.628	Mastacembelus_armatus
ENSSSCG00000009569	PSPC1	99	64.122	ENSMZEG00005005726	pspc1	87	58.887	Maylandia_zebra
ENSSSCG00000009569	PSPC1	78	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSSSCG00000009569	PSPC1	99	89.147	ENSMAUG00000021067	Pspc1	99	89.588	Mesocricetus_auratus
ENSSSCG00000009569	PSPC1	100	96.565	ENSMICG00000013970	PSPC1	100	96.565	Microcebus_murinus
ENSSSCG00000009569	PSPC1	100	95.038	ENSMOCG00000006060	Pspc1	100	95.594	Microtus_ochrogaster
ENSSSCG00000009569	PSPC1	91	53.186	ENSMMOG00000004352	pspc1	58	53.231	Mola_mola
ENSSSCG00000009569	PSPC1	99	94.041	ENSMODG00000008029	PSPC1	78	93.814	Monodelphis_domestica
ENSSSCG00000009569	PSPC1	84	77.160	ENSMALG00000008914	pspc1	88	67.591	Monopterus_albus
ENSSSCG00000009569	PSPC1	100	94.837	MGP_CAROLIEiJ_G0019341	Pspc1	100	95.220	Mus_caroli
ENSSSCG00000009569	PSPC1	100	96.000	ENSMUSG00000021938	Pspc1	100	95.411	Mus_musculus
ENSSSCG00000009569	PSPC1	100	95.810	MGP_PahariEiJ_G0030359	Pspc1	100	95.220	Mus_pahari
ENSSSCG00000009569	PSPC1	100	96.000	MGP_SPRETEiJ_G0020232	Pspc1	100	95.411	Mus_spretus
ENSSSCG00000009569	PSPC1	100	97.510	ENSMPUG00000013347	PSPC1	100	97.510	Mustela_putorius_furo
ENSSSCG00000009569	PSPC1	100	96.381	ENSMLUG00000017663	PSPC1	100	96.381	Myotis_lucifugus
ENSSSCG00000009569	PSPC1	100	96.183	ENSNGAG00000011271	Pspc1	100	96.183	Nannospalax_galili
ENSSSCG00000009569	PSPC1	99	64.394	ENSNBRG00000014059	pspc1	92	61.929	Neolamprologus_brichardi
ENSSSCG00000009569	PSPC1	100	96.756	ENSNLEG00000001294	PSPC1	100	96.756	Nomascus_leucogenys
ENSSSCG00000009569	PSPC1	78	97.917	ENSMEUG00000000476	PSPC1	84	91.016	Notamacropus_eugenii
ENSSSCG00000009569	PSPC1	99	88.802	ENSODEG00000019012	-	100	85.579	Octodon_degus
ENSSSCG00000009569	PSPC1	100	85.605	ENSODEG00000007817	-	100	81.214	Octodon_degus
ENSSSCG00000009569	PSPC1	99	70.918	ENSONIG00000012010	pspc1	87	68.856	Oreochromis_niloticus
ENSSSCG00000009569	PSPC1	77	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSSSCG00000009569	PSPC1	99	66.319	ENSOANG00000011381	-	99	63.985	Ornithorhynchus_anatinus
ENSSSCG00000009569	PSPC1	100	96.756	ENSOCUG00000006153	PSPC1	100	96.756	Oryctolagus_cuniculus
ENSSSCG00000009569	PSPC1	84	78.704	ENSORLG00000004232	-	87	64.389	Oryzias_latipes
ENSSSCG00000009569	PSPC1	84	78.086	ENSORLG00020000578	PSPC1	87	65.618	Oryzias_latipes_hni
ENSSSCG00000009569	PSPC1	84	79.012	ENSORLG00015017480	pspc1	82	68.879	Oryzias_latipes_hsok
ENSSSCG00000009569	PSPC1	54	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSSSCG00000009569	PSPC1	100	97.328	ENSOGAG00000012643	PSPC1	100	97.328	Otolemur_garnettii
ENSSSCG00000009569	PSPC1	100	91.778	ENSOARG00000014163	PSPC1	100	91.778	Ovis_aries
ENSSSCG00000009569	PSPC1	86	97.892	ENSPPAG00000009836	PSPC1	93	99.085	Pan_paniscus
ENSSSCG00000009569	PSPC1	100	97.510	ENSPPRG00000008833	PSPC1	100	97.510	Panthera_pardus
ENSSSCG00000009569	PSPC1	100	83.301	ENSPTIG00000016917	PSPC1	100	83.301	Panthera_tigris_altaica
ENSSSCG00000009569	PSPC1	99	96.382	ENSPTRG00000005677	PSPC1	99	96.920	Pan_troglodytes
ENSSSCG00000009569	PSPC1	100	96.947	ENSPANG00000001992	PSPC1	100	96.947	Papio_anubis
ENSSSCG00000009569	PSPC1	84	84.259	ENSPKIG00000003578	pspc1	80	77.907	Paramormyrops_kingsleyae
ENSSSCG00000009569	PSPC1	99	86.578	ENSPSIG00000005168	PSPC1	99	88.247	Pelodiscus_sinensis
ENSSSCG00000009569	PSPC1	79	70.740	ENSPMGG00000015135	pspc1	80	73.264	Periophthalmus_magnuspinnatus
ENSSSCG00000009569	PSPC1	100	96.374	ENSPEMG00000015214	Pspc1	100	96.374	Peromyscus_maniculatus_bairdii
ENSSSCG00000009569	PSPC1	76	45.277	ENSPMAG00000004618	pspc1	79	48.077	Petromyzon_marinus
ENSSSCG00000009569	PSPC1	99	94.444	ENSPCIG00000017680	PSPC1	100	94.253	Phascolarctos_cinereus
ENSSSCG00000009569	PSPC1	95	71.504	ENSPFOG00000003362	pspc1	88	68.076	Poecilia_formosa
ENSSSCG00000009569	PSPC1	77	69.024	ENSPLAG00000004407	-	51	61.475	Poecilia_latipinna
ENSSSCG00000009569	PSPC1	98	69.720	ENSPLAG00000011540	pspc1	87	68.076	Poecilia_latipinna
ENSSSCG00000009569	PSPC1	98	69.211	ENSPMEG00000008322	pspc1	87	67.653	Poecilia_mexicana
ENSSSCG00000009569	PSPC1	77	69.000	ENSPMEG00000001025	-	51	61.475	Poecilia_mexicana
ENSSSCG00000009569	PSPC1	98	68.957	ENSPREG00000007786	pspc1	87	67.653	Poecilia_reticulata
ENSSSCG00000009569	PSPC1	100	96.374	ENSPPYG00000005186	PSPC1	100	96.374	Pongo_abelii
ENSSSCG00000009569	PSPC1	73	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSSSCG00000009569	PSPC1	99	96.124	ENSPCOG00000014364	PSPC1	100	92.366	Propithecus_coquereli
ENSSSCG00000009569	PSPC1	99	96.883	ENSPVAG00000005036	PSPC1	100	94.061	Pteropus_vampyrus
ENSSSCG00000009569	PSPC1	99	64.631	ENSPNYG00000008893	pspc1	87	58.887	Pundamilia_nyererei
ENSSSCG00000009569	PSPC1	99	72.379	ENSPNAG00000016511	pspc1	85	73.284	Pygocentrus_nattereri
ENSSSCG00000009569	PSPC1	100	95.038	ENSRNOG00000020782	Pspc1	100	95.594	Rattus_norvegicus
ENSSSCG00000009569	PSPC1	94	97.541	ENSRBIG00000036057	PSPC1	100	97.541	Rhinopithecus_bieti
ENSSSCG00000009569	PSPC1	100	96.947	ENSRROG00000036334	PSPC1	100	96.947	Rhinopithecus_roxellana
ENSSSCG00000009569	PSPC1	79	88.620	ENSSBOG00000028172	PSPC1	92	93.929	Saimiri_boliviensis_boliviensis
ENSSSCG00000009569	PSPC1	100	89.143	ENSSHAG00000004696	PSPC1	100	88.952	Sarcophilus_harrisii
ENSSSCG00000009569	PSPC1	84	85.494	ENSSFOG00015001395	pspc1	89	78.505	Scleropages_formosus
ENSSSCG00000009569	PSPC1	89	74.148	ENSSMAG00000001761	pspc1	83	75.976	Scophthalmus_maximus
ENSSSCG00000009569	PSPC1	85	80.303	ENSSDUG00000010651	pspc1	76	74.186	Seriola_dumerili
ENSSSCG00000009569	PSPC1	86	72.455	ENSSLDG00000004284	pspc1	81	62.037	Seriola_lalandi_dorsalis
ENSSSCG00000009569	PSPC1	100	89.060	ENSSARG00000000888	PSPC1	100	90.038	Sorex_araneus
ENSSSCG00000009569	PSPC1	82	65.528	ENSSPUG00000001136	-	53	61.345	Sphenodon_punctatus
ENSSSCG00000009569	PSPC1	99	75.190	ENSSPUG00000008550	PSPC1	99	75.141	Sphenodon_punctatus
ENSSSCG00000009569	PSPC1	88	77.778	ENSSPAG00000001921	pspc1	77	72.791	Stegastes_partitus
ENSSSCG00000009569	PSPC1	89	94.635	ENSTGUG00000011295	PSPC1	99	94.635	Taeniopygia_guttata
ENSSSCG00000009569	PSPC1	84	70.988	ENSTRUG00000011335	pspc1	77	65.937	Takifugu_rubripes
ENSSSCG00000009569	PSPC1	85	72.424	ENSTNIG00000010358	pspc1	84	66.508	Tetraodon_nigroviridis
ENSSSCG00000009569	PSPC1	99	84.675	ENSTBEG00000002361	PSPC1	100	74.472	Tupaia_belangeri
ENSSSCG00000009569	PSPC1	100	99.040	ENSTTRG00000003343	PSPC1	100	99.040	Tursiops_truncatus
ENSSSCG00000009569	PSPC1	90	96.286	ENSUAMG00000012309	PSPC1	100	96.286	Ursus_americanus
ENSSSCG00000009569	PSPC1	94	97.131	ENSUMAG00000013993	PSPC1	100	97.131	Ursus_maritimus
ENSSSCG00000009569	PSPC1	77	98.997	ENSVPAG00000010029	PSPC1	100	98.997	Vicugna_pacos
ENSSSCG00000009569	PSPC1	100	97.318	ENSVVUG00000006414	PSPC1	100	97.318	Vulpes_vulpes
ENSSSCG00000009569	PSPC1	99	67.595	ENSXCOG00000017438	pspc1	78	75.988	Xiphophorus_couchianus
ENSSSCG00000009569	PSPC1	99	67.848	ENSXMAG00000007929	pspc1	78	76.292	Xiphophorus_maculatus