EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000009776 (Gene tree)
Gene ID: 100158131
Gene Symbol: SBNO1
Alias: FLJ10701|FLJ10833|MOP3|Sno
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 61542 bases
Position: chr14:29559155-29620696
Accession: 100158131
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000044743	ResIII	PF04851.15	1.5e-07	1	1
ENSSSCP00000041111	ResIII	PF04851.15	1.5e-07	1	1
ENSSSCP00000010439	ResIII	PF04851.15	1.6e-07	1	1
ENSSSCP00000033831	ResIII	PF04851.15	1.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000039568	SBNO1-204	9128	XM_021073996	ENSSSCP00000044743	1358 (aa)	XP_020929655	A0A287ALH0
ENSSSCT00000054058	SBNO1-202	9233	XM_021073992	ENSSSCP00000033831	1393 (aa)	XP_020929651	A0A286ZQE2
ENSSSCT00000010718	SBNO1-201	8825	XM_021073993	ENSSSCP00000010439	1392 (aa)	XP_020929652	F1RFK9
ENSSSCT00000048707	SBNO1-203	9155	-	ENSSSCP00000041111	1367 (aa)	-	A0A287AB38

Gene Model

Click here to download ENSSSCG00000009776's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000009776's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000009776	SBNO1	71	68.481	ENSSSCG00000030042	SBNO2	73	68.481

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000009776	SBNO1	100	98.205	ENSG00000139697	SBNO1	100	98.205	Homo_sapiens
ENSSSCG00000009776	SBNO1	85	81.169	ENSAPOG00000003196	sbno1	98	81.255	Acanthochromis_polyacanthus
ENSSSCG00000009776	SBNO1	100	98.281	ENSAMEG00000015151	SBNO1	100	98.281	Ailuropoda_melanoleuca
ENSSSCG00000009776	SBNO1	99	76.424	ENSACIG00000008088	sbno1	99	76.263	Amphilophus_citrinellus
ENSSSCG00000009776	SBNO1	99	75.211	ENSAOCG00000014859	sbno1	99	75.264	Amphiprion_ocellaris
ENSSSCG00000009776	SBNO1	99	75.211	ENSAPEG00000006069	sbno1	99	75.264	Amphiprion_percula
ENSSSCG00000009776	SBNO1	99	75.910	ENSATEG00000006667	sbno1	99	76.050	Anabas_testudineus
ENSSSCG00000009776	SBNO1	100	92.457	ENSAPLG00000015674	SBNO1	100	92.462	Anas_platyrhynchos
ENSSSCG00000009776	SBNO1	100	89.658	ENSACAG00000015441	SBNO1	88	89.512	Anolis_carolinensis
ENSSSCG00000009776	SBNO1	100	97.865	ENSANAG00000029958	-	99	98.915	Aotus_nancymaae
ENSSSCG00000009776	SBNO1	99	76.211	ENSACLG00000024913	sbno1	99	76.079	Astatotilapia_calliptera
ENSSSCG00000009776	SBNO1	99	79.516	ENSAMXG00000019473	sbno1	99	79.516	Astyanax_mexicanus
ENSSSCG00000009776	SBNO1	99	99.042	ENSBTAG00000020505	SBNO1	99	99.042	Bos_taurus
ENSSSCG00000009776	SBNO1	100	97.990	ENSCJAG00000016599	SBNO1	100	97.990	Callithrix_jacchus
ENSSSCG00000009776	SBNO1	100	98.495	ENSCAFG00000007503	SBNO1	100	98.495	Canis_familiaris
ENSSSCG00000009776	SBNO1	100	97.775	ENSCAFG00020015363	SBNO1	100	97.775	Canis_lupus_dingo
ENSSSCG00000009776	SBNO1	99	98.778	ENSCHIG00000008382	SBNO1	99	98.923	Capra_hircus
ENSSSCG00000009776	SBNO1	100	98.748	ENSTSYG00000012749	SBNO1	100	98.748	Carlito_syrichta
ENSSSCG00000009776	SBNO1	97	97.882	ENSCAPG00000000384	SBNO1	100	98.122	Cavia_aperea
ENSSSCG00000009776	SBNO1	100	97.414	ENSCPOG00000008109	SBNO1	100	99.104	Cavia_porcellus
ENSSSCG00000009776	SBNO1	100	93.615	ENSCCAG00000035316	SBNO1	100	95.368	Cebus_capucinus
ENSSSCG00000009776	SBNO1	99	96.328	ENSCATG00000008239	SBNO1	98	99.458	Cercocebus_atys
ENSSSCG00000009776	SBNO1	100	97.559	ENSCLAG00000008995	SBNO1	100	99.104	Chinchilla_lanigera
ENSSSCG00000009776	SBNO1	85	98.964	ENSCSAG00000002064	SBNO1	100	98.964	Chlorocebus_sabaeus
ENSSSCG00000009776	SBNO1	98	94.803	ENSCHOG00000008814	SBNO1	96	94.803	Choloepus_hoffmanni
ENSSSCG00000009776	SBNO1	100	92.606	ENSCPBG00000025968	SBNO1	99	92.606	Chrysemys_picta_bellii
ENSSSCG00000009776	SBNO1	100	92.832	ENSCANG00000042688	-	100	92.760	Colobus_angolensis_palliatus
ENSSSCG00000009776	SBNO1	100	97.559	ENSCGRG00001017470	Sbno1	100	97.559	Cricetulus_griseus_chok1gshd
ENSSSCG00000009776	SBNO1	100	97.559	ENSCGRG00000004756	Sbno1	100	97.559	Cricetulus_griseus_crigri
ENSSSCG00000009776	SBNO1	99	74.392	ENSCSEG00000011919	sbno1	99	75.193	Cynoglossus_semilaevis
ENSSSCG00000009776	SBNO1	99	75.619	ENSCVAG00000007038	sbno1	99	75.857	Cyprinodon_variegatus
ENSSSCG00000009776	SBNO1	99	79.143	ENSDARG00000099080	sbno1	99	79.229	Danio_rerio
ENSSSCG00000009776	SBNO1	100	97.868	ENSDNOG00000017147	SBNO1	98	98.561	Dasypus_novemcinctus
ENSSSCG00000009776	SBNO1	100	84.519	ENSDORG00000015261	Sbno1	100	84.519	Dipodomys_ordii
ENSSSCG00000009776	SBNO1	93	90.909	ENSETEG00000005620	SBNO1	93	90.909	Echinops_telfairi
ENSSSCG00000009776	SBNO1	76	63.011	ENSEBUG00000013823	sbno1	93	63.584	Eptatretus_burgeri
ENSSSCG00000009776	SBNO1	50	99.703	ENSEASG00005012595	-	92	99.703	Equus_asinus_asinus
ENSSSCG00000009776	SBNO1	100	99.067	ENSECAG00000006127	SBNO1	100	99.067	Equus_caballus
ENSSSCG00000009776	SBNO1	84	100.000	ENSEEUG00000003793	SBNO1	83	100.000	Erinaceus_europaeus
ENSSSCG00000009776	SBNO1	99	77.959	ENSELUG00000002886	sbno1	99	78.030	Esox_lucius
ENSSSCG00000009776	SBNO1	99	98.994	ENSFCAG00000015331	SBNO1	99	98.994	Felis_catus
ENSSSCG00000009776	SBNO1	100	92.313	ENSFALG00000009273	SBNO1	100	92.391	Ficedula_albicollis
ENSSSCG00000009776	SBNO1	99	96.522	ENSFDAG00000014232	SBNO1	99	96.858	Fukomys_damarensis
ENSSSCG00000009776	SBNO1	99	75.760	ENSFHEG00000007360	sbno1	99	75.879	Fundulus_heteroclitus
ENSSSCG00000009776	SBNO1	97	78.191	ENSGMOG00000018229	sbno1	99	78.566	Gadus_morhua
ENSSSCG00000009776	SBNO1	88	92.851	ENSGALG00000003392	SBNO1	99	92.851	Gallus_gallus
ENSSSCG00000009776	SBNO1	99	77.064	ENSGAFG00000003960	sbno1	99	77.068	Gambusia_affinis
ENSSSCG00000009776	SBNO1	97	78.907	ENSGACG00000015633	sbno1	99	78.871	Gasterosteus_aculeatus
ENSSSCG00000009776	SBNO1	100	91.744	ENSGAGG00000001065	SBNO1	99	95.118	Gopherus_agassizii
ENSSSCG00000009776	SBNO1	100	98.159	ENSGGOG00000015000	SBNO1	100	98.577	Gorilla_gorilla
ENSSSCG00000009776	SBNO1	99	70.395	ENSHBUG00000011910	sbno1	99	70.357	Haplochromis_burtoni
ENSSSCG00000009776	SBNO1	100	97.631	ENSHGLG00000014165	-	99	99.458	Heterocephalus_glaber_female
ENSSSCG00000009776	SBNO1	91	84.980	ENSHCOG00000003246	sbno1	95	84.980	Hippocampus_comes
ENSSSCG00000009776	SBNO1	99	78.835	ENSIPUG00000015830	Sbno1	98	78.835	Ictalurus_punctatus
ENSSSCG00000009776	SBNO1	100	98.601	ENSSTOG00000023221	SBNO1	99	99.638	Ictidomys_tridecemlineatus
ENSSSCG00000009776	SBNO1	100	97.631	ENSJJAG00000001741	Sbno1	100	97.631	Jaculus_jaculus
ENSSSCG00000009776	SBNO1	99	76.839	ENSKMAG00000009696	sbno1	99	76.577	Kryptolebias_marmoratus
ENSSSCG00000009776	SBNO1	99	75.732	ENSLBEG00000007623	sbno1	99	75.941	Labrus_bergylta
ENSSSCG00000009776	SBNO1	99	81.415	ENSLACG00000017227	SBNO1	99	83.874	Latimeria_chalumnae
ENSSSCG00000009776	SBNO1	99	81.889	ENSLOCG00000005725	sbno1	97	81.734	Lepisosteus_oculatus
ENSSSCG00000009776	SBNO1	100	97.487	ENSLAFG00000002135	SBNO1	100	97.487	Loxodonta_africana
ENSSSCG00000009776	SBNO1	100	98.205	ENSMFAG00000031429	SBNO1	100	98.205	Macaca_fascicularis
ENSSSCG00000009776	SBNO1	100	98.205	ENSMMUG00000011496	SBNO1	100	98.205	Macaca_mulatta
ENSSSCG00000009776	SBNO1	100	96.482	ENSMLEG00000033260	SBNO1	99	99.458	Mandrillus_leucophaeus
ENSSSCG00000009776	SBNO1	99	75.668	ENSMAMG00000005473	sbno1	99	75.809	Mastacembelus_armatus
ENSSSCG00000009776	SBNO1	100	92.529	ENSMGAG00000003274	SBNO1	100	92.606	Meleagris_gallopavo
ENSSSCG00000009776	SBNO1	51	93.266	ENSMAUG00000004834	-	100	98.193	Mesocricetus_auratus
ENSSSCG00000009776	SBNO1	100	97.570	ENSMICG00000006573	-	99	98.681	Microcebus_murinus
ENSSSCG00000009776	SBNO1	100	94.189	ENSMOCG00000009390	Sbno1	100	98.208	Microtus_ochrogaster
ENSSSCG00000009776	SBNO1	99	73.555	ENSMMOG00000008691	sbno1	99	73.753	Mola_mola
ENSSSCG00000009776	SBNO1	99	95.402	ENSMODG00000012470	SBNO1	98	95.187	Monodelphis_domestica
ENSSSCG00000009776	SBNO1	99	75.297	ENSMALG00000001056	sbno1	99	75.385	Monopterus_albus
ENSSSCG00000009776	SBNO1	99	97.486	MGP_CAROLIEiJ_G0027749	Sbno1	100	98.193	Mus_caroli
ENSSSCG00000009776	SBNO1	99	97.989	ENSMUSG00000038095	Sbno1	100	98.494	Mus_musculus
ENSSSCG00000009776	SBNO1	99	97.845	MGP_PahariEiJ_G0024329	Sbno1	100	98.193	Mus_pahari
ENSSSCG00000009776	SBNO1	99	97.773	MGP_SPRETEiJ_G0028747	Sbno1	100	98.494	Mus_spretus
ENSSSCG00000009776	SBNO1	100	98.780	ENSMPUG00000001658	SBNO1	100	98.780	Mustela_putorius_furo
ENSSSCG00000009776	SBNO1	100	98.277	ENSMLUG00000017159	SBNO1	100	98.277	Myotis_lucifugus
ENSSSCG00000009776	SBNO1	100	98.205	ENSNGAG00000012620	Sbno1	100	98.205	Nannospalax_galili
ENSSSCG00000009776	SBNO1	99	76.229	ENSNBRG00000019189	sbno1	99	76.096	Neolamprologus_brichardi
ENSSSCG00000009776	SBNO1	100	94.404	ENSNLEG00000001502	SBNO1	99	95.616	Nomascus_leucogenys
ENSSSCG00000009776	SBNO1	63	86.076	ENSMEUG00000008768	-	93	89.241	Notamacropus_eugenii
ENSSSCG00000009776	SBNO1	100	94.476	ENSOPRG00000011054	SBNO1	100	94.405	Ochotona_princeps
ENSSSCG00000009776	SBNO1	100	97.414	ENSODEG00000009997	SBNO1	100	99.104	Octodon_degus
ENSSSCG00000009776	SBNO1	99	75.423	ENSONIG00000015348	sbno1	99	75.509	Oreochromis_niloticus
ENSSSCG00000009776	SBNO1	98	96.496	ENSOCUG00000002441	SBNO1	95	96.496	Oryctolagus_cuniculus
ENSSSCG00000009776	SBNO1	99	75.088	ENSORLG00000001593	sbno1	99	75.127	Oryzias_latipes
ENSSSCG00000009776	SBNO1	99	75.211	ENSORLG00020015216	sbno1	99	75.070	Oryzias_latipes_hni
ENSSSCG00000009776	SBNO1	99	75.211	ENSORLG00015002726	sbno1	99	75.141	Oryzias_latipes_hsok
ENSSSCG00000009776	SBNO1	99	75.676	ENSOMEG00000019313	sbno1	99	75.409	Oryzias_melastigma
ENSSSCG00000009776	SBNO1	51	89.685	ENSOGAG00000010781	-	100	95.633	Otolemur_garnettii
ENSSSCG00000009776	SBNO1	99	98.564	ENSOARG00000004404	SBNO1	99	98.564	Ovis_aries
ENSSSCG00000009776	SBNO1	100	98.233	ENSPPAG00000024635	SBNO1	100	98.399	Pan_paniscus
ENSSSCG00000009776	SBNO1	99	98.994	ENSPPRG00000022092	SBNO1	99	98.994	Panthera_pardus
ENSSSCG00000009776	SBNO1	100	98.708	ENSPTIG00000017803	SBNO1	100	98.708	Panthera_tigris_altaica
ENSSSCG00000009776	SBNO1	100	98.306	ENSPTRG00000005597	SBNO1	100	98.577	Pan_troglodytes
ENSSSCG00000009776	SBNO1	100	98.159	ENSPANG00000011640	SBNO1	99	99.458	Papio_anubis
ENSSSCG00000009776	SBNO1	99	80.343	ENSPKIG00000001441	sbno1	99	80.258	Paramormyrops_kingsleyae
ENSSSCG00000009776	SBNO1	92	88.180	ENSPSIG00000009256	-	100	88.180	Pelodiscus_sinensis
ENSSSCG00000009776	SBNO1	100	91.973	ENSPSIG00000009572	-	100	91.979	Pelodiscus_sinensis
ENSSSCG00000009776	SBNO1	100	97.344	ENSPEMG00000016087	Sbno1	100	97.344	Peromyscus_maniculatus_bairdii
ENSSSCG00000009776	SBNO1	99	94.760	ENSPCIG00000010985	SBNO1	99	94.919	Phascolarctos_cinereus
ENSSSCG00000009776	SBNO1	99	76.110	ENSPFOG00000005069	sbno1	99	76.190	Poecilia_formosa
ENSSSCG00000009776	SBNO1	99	75.969	ENSPLAG00000015015	sbno1	99	76.227	Poecilia_latipinna
ENSSSCG00000009776	SBNO1	99	76.023	ENSPMEG00000021212	sbno1	99	76.104	Poecilia_mexicana
ENSSSCG00000009776	SBNO1	99	75.670	ENSPREG00000017746	sbno1	99	75.753	Poecilia_reticulata
ENSSSCG00000009776	SBNO1	100	97.845	ENSPPYG00000005084	SBNO1	100	97.845	Pongo_abelii
ENSSSCG00000009776	SBNO1	89	93.141	ENSPCAG00000008634	SBNO1	88	93.103	Procavia_capensis
ENSSSCG00000009776	SBNO1	100	98.675	ENSPCOG00000024277	SBNO1	100	98.675	Propithecus_coquereli
ENSSSCG00000009776	SBNO1	87	99.603	ENSPVAG00000015304	SBNO1	87	99.603	Pteropus_vampyrus
ENSSSCG00000009776	SBNO1	99	75.740	ENSPNYG00000004291	sbno1	99	75.615	Pundamilia_nyererei
ENSSSCG00000009776	SBNO1	99	79.205	ENSPNAG00000015622	sbno1	99	79.134	Pygocentrus_nattereri
ENSSSCG00000009776	SBNO1	99	97.701	ENSRNOG00000001064	Sbno1	99	98.923	Rattus_norvegicus
ENSSSCG00000009776	SBNO1	100	98.233	ENSRROG00000034230	SBNO1	99	99.458	Rhinopithecus_roxellana
ENSSSCG00000009776	SBNO1	97	92.447	ENSSBOG00000015422	SBNO1	100	92.932	Saimiri_boliviensis_boliviensis
ENSSSCG00000009776	SBNO1	99	80.704	ENSSFOG00015019025	sbno1	99	80.984	Scleropages_formosus
ENSSSCG00000009776	SBNO1	99	75.758	ENSSMAG00000013640	sbno1	99	75.969	Scophthalmus_maximus
ENSSSCG00000009776	SBNO1	99	75.455	ENSSDUG00000023480	sbno1	99	75.455	Seriola_dumerili
ENSSSCG00000009776	SBNO1	99	75.385	ENSSLDG00000007928	sbno1	99	75.385	Seriola_lalandi_dorsalis
ENSSSCG00000009776	SBNO1	89	98.867	ENSSARG00000002594	SBNO1	89	98.867	Sorex_araneus
ENSSSCG00000009776	SBNO1	100	91.244	ENSSPUG00000012640	SBNO1	100	91.244	Sphenodon_punctatus
ENSSSCG00000009776	SBNO1	99	75.035	ENSSPAG00000016244	sbno1	99	75.105	Stegastes_partitus
ENSSSCG00000009776	SBNO1	100	92.241	ENSTGUG00000005380	SBNO1	100	92.319	Taeniopygia_guttata
ENSSSCG00000009776	SBNO1	99	77.199	ENSTRUG00000018490	sbno1	99	77.013	Takifugu_rubripes
ENSSSCG00000009776	SBNO1	57	70.173	ENSTNIG00000013506	sbno1	99	70.361	Tetraodon_nigroviridis
ENSSSCG00000009776	SBNO1	100	98.708	ENSUAMG00000019671	SBNO1	100	98.708	Ursus_americanus
ENSSSCG00000009776	SBNO1	100	98.708	ENSUMAG00000004002	SBNO1	100	98.708	Ursus_maritimus
ENSSSCG00000009776	SBNO1	95	97.826	ENSVPAG00000007024	SBNO1	95	97.826	Vicugna_pacos
ENSSSCG00000009776	SBNO1	100	98.708	ENSVVUG00000027807	SBNO1	100	98.708	Vulpes_vulpes
ENSSSCG00000009776	SBNO1	99	82.630	ENSXETG00000031930	SBNO1	99	82.332	Xenopus_tropicalis
ENSSSCG00000009776	SBNO1	89	74.402	ENSXCOG00000011607	sbno1	95	75.142	Xiphophorus_couchianus
ENSSSCG00000009776	SBNO1	99	76.754	ENSXMAG00000002140	sbno1	99	76.471	Xiphophorus_maculatus