EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000010002 (Gene tree)
Gene ID: 100154850
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 30591 bases
Position: chr14:47304808-47335398
Accession: 100154850
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000026529	PRP21_like_P	PF12230.8	2e-51	1	1
ENSSSCP00000041602	PRP21_like_P	PF12230.8	2.2e-51	1	1
ENSSSCP00000010674	PRP21_like_P	PF12230.8	2.6e-51	1	1
ENSSSCP00000026529	Surp	PF01805.20	8.1e-46	1	2
ENSSSCP00000026529	Surp	PF01805.20	8.1e-46	2	2
ENSSSCP00000041602	Surp	PF01805.20	8.7e-46	1	2
ENSSSCP00000041602	Surp	PF01805.20	8.7e-46	2	2
ENSSSCP00000010674	Surp	PF01805.20	1.1e-45	1	2
ENSSSCP00000010674	Surp	PF01805.20	1.1e-45	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000010959	SF3A1-201	2777	XM_003483452	ENSSSCP00000010674	793 (aa)	XP_003483500	F1RFD3
ENSSSCT00000064184	SF3A1-202	4043	-	ENSSSCP00000041602	722 (aa)	-	A0A287ACP7
ENSSSCT00000031961	SF3A1-203	3155	-	ENSSSCP00000026529	695 (aa)	-	I3LQZ7

Gene Model

Click here to download ENSSSCG00000010002's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000010002's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000010002	SF3A1	100	98.739	ENSG00000099995	SF3A1	100	98.739	Homo_sapiens
ENSSSCG00000010002	SF3A1	100	83.396	ENSAPOG00000020465	sf3a1	99	84.271	Acanthochromis_polyacanthus
ENSSSCG00000010002	SF3A1	100	98.742	ENSAMEG00000007737	SF3A1	100	98.742	Ailuropoda_melanoleuca
ENSSSCG00000010002	SF3A1	100	84.151	ENSACIG00000020672	sf3a1	99	85.166	Amphilophus_citrinellus
ENSSSCG00000010002	SF3A1	100	83.125	ENSAOCG00000003060	sf3a1	99	84.271	Amphiprion_ocellaris
ENSSSCG00000010002	SF3A1	100	83.250	ENSAPEG00000010735	sf3a1	99	84.399	Amphiprion_percula
ENSSSCG00000010002	SF3A1	96	85.938	ENSATEG00000021201	sf3a1	98	84.576	Anabas_testudineus
ENSSSCG00000010002	SF3A1	95	93.923	ENSAPLG00000009057	SF3A1	99	93.032	Anas_platyrhynchos
ENSSSCG00000010002	SF3A1	100	85.961	ENSACAG00000009415	SF3A1	100	87.069	Anolis_carolinensis
ENSSSCG00000010002	SF3A1	100	98.865	ENSANAG00000032045	SF3A1	100	98.865	Aotus_nancymaae
ENSSSCG00000010002	SF3A1	100	84.481	ENSACLG00000012622	sf3a1	99	85.531	Astatotilapia_calliptera
ENSSSCG00000010002	SF3A1	99	83.312	ENSAMXG00000005382	sf3a1	99	84.299	Astyanax_mexicanus
ENSSSCG00000010002	SF3A1	100	99.622	ENSBTAG00000003390	SF3A1	100	99.622	Bos_taurus
ENSSSCG00000010002	SF3A1	84	43.447	WBGene00004188	prp-21	94	43.502	Caenorhabditis_elegans
ENSSSCG00000010002	SF3A1	100	98.991	ENSCJAG00000010370	SF3A1	100	98.991	Callithrix_jacchus
ENSSSCG00000010002	SF3A1	100	99.369	ENSCAFG00000012559	SF3A1	100	99.369	Canis_familiaris
ENSSSCG00000010002	SF3A1	100	99.369	ENSCAFG00020000838	SF3A1	100	99.369	Canis_lupus_dingo
ENSSSCG00000010002	SF3A1	100	99.496	ENSCHIG00000018642	SF3A1	100	99.496	Capra_hircus
ENSSSCG00000010002	SF3A1	100	99.243	ENSTSYG00000004739	SF3A1	100	99.243	Carlito_syrichta
ENSSSCG00000010002	SF3A1	94	83.382	ENSCAPG00000015414	SF3A1	98	81.308	Cavia_aperea
ENSSSCG00000010002	SF3A1	100	98.991	ENSCPOG00000014589	SF3A1	100	98.991	Cavia_porcellus
ENSSSCG00000010002	SF3A1	100	98.865	ENSCCAG00000032006	SF3A1	100	98.865	Cebus_capucinus
ENSSSCG00000010002	SF3A1	100	99.117	ENSCATG00000029241	SF3A1	100	99.117	Cercocebus_atys
ENSSSCG00000010002	SF3A1	100	98.361	ENSCLAG00000006508	SF3A1	100	98.361	Chinchilla_lanigera
ENSSSCG00000010002	SF3A1	100	98.991	ENSCSAG00000009470	SF3A1	100	98.991	Chlorocebus_sabaeus
ENSSSCG00000010002	SF3A1	61	99.262	ENSCHOG00000005201	SF3A1	69	99.262	Choloepus_hoffmanni
ENSSSCG00000010002	SF3A1	100	90.932	ENSCPBG00000007595	SF3A1	100	91.058	Chrysemys_picta_bellii
ENSSSCG00000010002	SF3A1	94	51.984	ENSCING00000008526	-	66	58.046	Ciona_intestinalis
ENSSSCG00000010002	SF3A1	96	51.484	ENSCSAVG00000005608	-	92	62.712	Ciona_savignyi
ENSSSCG00000010002	SF3A1	100	98.991	ENSCANG00000033564	SF3A1	100	98.991	Colobus_angolensis_palliatus
ENSSSCG00000010002	SF3A1	100	98.487	ENSCGRG00001008933	Sf3a1	100	98.487	Cricetulus_griseus_chok1gshd
ENSSSCG00000010002	SF3A1	100	98.487	ENSCGRG00000006127	Sf3a1	100	98.487	Cricetulus_griseus_crigri
ENSSSCG00000010002	SF3A1	99	81.980	ENSCSEG00000010792	sf3a1	99	81.923	Cynoglossus_semilaevis
ENSSSCG00000010002	SF3A1	100	83.019	ENSCVAG00000004560	sf3a1	98	84.245	Cyprinodon_variegatus
ENSSSCG00000010002	SF3A1	100	82.412	ENSDARG00000041887	sf3a1	97	84.746	Danio_rerio
ENSSSCG00000010002	SF3A1	100	98.994	ENSDNOG00000010629	SF3A1	100	98.994	Dasypus_novemcinctus
ENSSSCG00000010002	SF3A1	100	99.117	ENSDORG00000005613	Sf3a1	100	99.117	Dipodomys_ordii
ENSSSCG00000010002	SF3A1	79	61.682	FBgn0266917	Sf3a1	85	60.323	Drosophila_melanogaster
ENSSSCG00000010002	SF3A1	93	97.006	ENSETEG00000017194	SF3A1	100	94.729	Echinops_telfairi
ENSSSCG00000010002	SF3A1	100	65.176	ENSEBUG00000001285	sf3a1	96	67.654	Eptatretus_burgeri
ENSSSCG00000010002	SF3A1	100	99.496	ENSEASG00005010254	SF3A1	100	99.496	Equus_asinus_asinus
ENSSSCG00000010002	SF3A1	100	99.496	ENSECAG00000023962	SF3A1	100	99.496	Equus_caballus
ENSSSCG00000010002	SF3A1	75	93.449	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSSSCG00000010002	SF3A1	100	82.581	ENSELUG00000022578	sf3a1	98	83.333	Esox_lucius
ENSSSCG00000010002	SF3A1	100	99.369	ENSFCAG00000011932	SF3A1	100	99.369	Felis_catus
ENSSSCG00000010002	SF3A1	95	92.989	ENSFALG00000006944	SF3A1	100	91.688	Ficedula_albicollis
ENSSSCG00000010002	SF3A1	100	98.865	ENSFDAG00000009560	SF3A1	100	98.865	Fukomys_damarensis
ENSSSCG00000010002	SF3A1	100	84.151	ENSFHEG00000010866	sf3a1	98	84.635	Fundulus_heteroclitus
ENSSSCG00000010002	SF3A1	100	81.108	ENSGMOG00000016024	sf3a1	99	80.995	Gadus_morhua
ENSSSCG00000010002	SF3A1	95	93.915	ENSGALG00000007937	SF3A1	100	92.191	Gallus_gallus
ENSSSCG00000010002	SF3A1	100	83.145	ENSGAFG00000009111	sf3a1	97	84.575	Gambusia_affinis
ENSSSCG00000010002	SF3A1	100	82.494	ENSGACG00000011893	sf3a1	97	83.508	Gasterosteus_aculeatus
ENSSSCG00000010002	SF3A1	97	90.754	ENSGAGG00000000762	SF3A1	99	91.196	Gopherus_agassizii
ENSSSCG00000010002	SF3A1	100	98.739	ENSGGOG00000012631	SF3A1	100	98.739	Gorilla_gorilla
ENSSSCG00000010002	SF3A1	100	84.481	ENSHBUG00000015795	sf3a1	99	85.531	Haplochromis_burtoni
ENSSSCG00000010002	SF3A1	100	99.117	ENSHGLG00000007907	SF3A1	100	99.117	Heterocephalus_glaber_female
ENSSSCG00000010002	SF3A1	100	99.117	ENSHGLG00100013799	SF3A1	100	99.117	Heterocephalus_glaber_male
ENSSSCG00000010002	SF3A1	100	80.377	ENSHCOG00000015423	sf3a1	99	80.903	Hippocampus_comes
ENSSSCG00000010002	SF3A1	96	82.552	ENSIPUG00000002470	sf3a1	98	82.161	Ictalurus_punctatus
ENSSSCG00000010002	SF3A1	100	99.243	ENSSTOG00000013892	SF3A1	100	99.243	Ictidomys_tridecemlineatus
ENSSSCG00000010002	SF3A1	100	98.866	ENSJJAG00000022566	Sf3a1	100	98.866	Jaculus_jaculus
ENSSSCG00000010002	SF3A1	100	83.019	ENSKMAG00000002400	sf3a1	98	84.375	Kryptolebias_marmoratus
ENSSSCG00000010002	SF3A1	100	82.516	ENSLBEG00000022974	sf3a1	99	82.968	Labrus_bergylta
ENSSSCG00000010002	SF3A1	100	86.951	ENSLACG00000003565	SF3A1	97	88.411	Latimeria_chalumnae
ENSSSCG00000010002	SF3A1	100	85.464	ENSLOCG00000008251	sf3a1	97	87.143	Lepisosteus_oculatus
ENSSSCG00000010002	SF3A1	98	62.293	ENSLAFG00000026032	-	98	62.166	Loxodonta_africana
ENSSSCG00000010002	SF3A1	100	98.991	ENSLAFG00000000448	SF3A1	100	98.991	Loxodonta_africana
ENSSSCG00000010002	SF3A1	100	98.865	ENSMFAG00000031979	SF3A1	100	98.865	Macaca_fascicularis
ENSSSCG00000010002	SF3A1	100	98.865	ENSMMUG00000005547	SF3A1	100	98.865	Macaca_mulatta
ENSSSCG00000010002	SF3A1	100	98.739	ENSMNEG00000037229	SF3A1	100	98.739	Macaca_nemestrina
ENSSSCG00000010002	SF3A1	100	98.991	ENSMLEG00000041908	SF3A1	100	98.991	Mandrillus_leucophaeus
ENSSSCG00000010002	SF3A1	97	85.770	ENSMAMG00000006460	sf3a1	97	85.123	Mastacembelus_armatus
ENSSSCG00000010002	SF3A1	100	84.481	ENSMZEG00005009633	sf3a1	99	85.531	Maylandia_zebra
ENSSSCG00000010002	SF3A1	95	93.915	ENSMGAG00000001330	SF3A1	99	93.023	Meleagris_gallopavo
ENSSSCG00000010002	SF3A1	92	95.082	ENSMAUG00000020317	Sf3a1	94	95.082	Mesocricetus_auratus
ENSSSCG00000010002	SF3A1	100	98.865	ENSMICG00000010038	SF3A1	100	98.865	Microcebus_murinus
ENSSSCG00000010002	SF3A1	100	98.613	ENSMOCG00000008438	Sf3a1	100	98.613	Microtus_ochrogaster
ENSSSCG00000010002	SF3A1	100	81.761	ENSMMOG00000015588	sf3a1	98	82.239	Mola_mola
ENSSSCG00000010002	SF3A1	100	98.108	ENSMODG00000009270	SF3A1	100	98.108	Monodelphis_domestica
ENSSSCG00000010002	SF3A1	100	84.509	ENSMALG00000000148	sf3a1	99	85.422	Monopterus_albus
ENSSSCG00000010002	SF3A1	100	98.108	MGP_CAROLIEiJ_G0016029	Sf3a1	100	98.108	Mus_caroli
ENSSSCG00000010002	SF3A1	100	98.108	ENSMUSG00000002129	Sf3a1	100	98.108	Mus_musculus
ENSSSCG00000010002	SF3A1	100	98.108	MGP_PahariEiJ_G0016862	Sf3a1	100	98.108	Mus_pahari
ENSSSCG00000010002	SF3A1	100	98.108	MGP_SPRETEiJ_G0016870	Sf3a1	100	98.108	Mus_spretus
ENSSSCG00000010002	SF3A1	100	99.369	ENSMPUG00000013144	SF3A1	100	99.369	Mustela_putorius_furo
ENSSSCG00000010002	SF3A1	100	99.243	ENSMLUG00000002139	SF3A1	100	99.243	Myotis_lucifugus
ENSSSCG00000010002	SF3A1	100	98.865	ENSNGAG00000016977	Sf3a1	100	98.865	Nannospalax_galili
ENSSSCG00000010002	SF3A1	100	83.895	ENSNBRG00000016642	sf3a1	96	86.957	Neolamprologus_brichardi
ENSSSCG00000010002	SF3A1	100	98.991	ENSNLEG00000003686	SF3A1	100	98.991	Nomascus_leucogenys
ENSSSCG00000010002	SF3A1	99	85.754	ENSMEUG00000008741	SF3A1	100	88.158	Notamacropus_eugenii
ENSSSCG00000010002	SF3A1	100	98.235	ENSOPRG00000016636	SF3A1	100	98.235	Ochotona_princeps
ENSSSCG00000010002	SF3A1	100	98.739	ENSODEG00000002571	SF3A1	100	98.739	Octodon_degus
ENSSSCG00000010002	SF3A1	100	84.230	ENSONIG00000010848	sf3a1	99	84.910	Oreochromis_niloticus
ENSSSCG00000010002	SF3A1	100	98.865	ENSOCUG00000007633	SF3A1	100	98.865	Oryctolagus_cuniculus
ENSSSCG00000010002	SF3A1	97	81.108	ENSORLG00000013050	sf3a1	99	83.178	Oryzias_latipes
ENSSSCG00000010002	SF3A1	97	81.960	ENSORLG00020003236	sf3a1	94	83.311	Oryzias_latipes_hni
ENSSSCG00000010002	SF3A1	100	82.138	ENSORLG00015017411	sf3a1	99	83.484	Oryzias_latipes_hsok
ENSSSCG00000010002	SF3A1	100	82.642	ENSOMEG00000013362	sf3a1	99	83.226	Oryzias_melastigma
ENSSSCG00000010002	SF3A1	100	98.739	ENSOGAG00000012931	SF3A1	100	98.739	Otolemur_garnettii
ENSSSCG00000010002	SF3A1	100	97.730	ENSOARG00000006849	SF3A1	100	97.730	Ovis_aries
ENSSSCG00000010002	SF3A1	100	97.730	ENSPPAG00000041790	SF3A1	100	97.730	Pan_paniscus
ENSSSCG00000010002	SF3A1	100	99.369	ENSPPRG00000004391	SF3A1	100	99.369	Panthera_pardus
ENSSSCG00000010002	SF3A1	97	99.223	ENSPTIG00000000844	SF3A1	100	99.223	Panthera_tigris_altaica
ENSSSCG00000010002	SF3A1	100	98.739	ENSPTRG00000014240	SF3A1	100	98.739	Pan_troglodytes
ENSSSCG00000010002	SF3A1	100	98.991	ENSPANG00000020772	SF3A1	100	98.991	Papio_anubis
ENSSSCG00000010002	SF3A1	83	94.505	ENSPSIG00000012803	SF3A1	96	94.505	Pelodiscus_sinensis
ENSSSCG00000010002	SF3A1	96	84.293	ENSPMGG00000023096	sf3a1	100	84.293	Periophthalmus_magnuspinnatus
ENSSSCG00000010002	SF3A1	100	98.739	ENSPEMG00000009494	Sf3a1	100	98.739	Peromyscus_maniculatus_bairdii
ENSSSCG00000010002	SF3A1	79	78.040	ENSPMAG00000007139	-	90	79.626	Petromyzon_marinus
ENSSSCG00000010002	SF3A1	100	97.856	ENSPCIG00000022692	SF3A1	100	97.856	Phascolarctos_cinereus
ENSSSCG00000010002	SF3A1	100	75.251	ENSPFOG00000016768	sf3a1	93	78.639	Poecilia_formosa
ENSSSCG00000010002	SF3A1	100	83.543	ENSPLAG00000017268	sf3a1	97	84.314	Poecilia_latipinna
ENSSSCG00000010002	SF3A1	84	85.994	ENSPMEG00000019811	sf3a1	98	84.940	Poecilia_mexicana
ENSSSCG00000010002	SF3A1	100	83.668	ENSPREG00000010347	sf3a1	97	84.706	Poecilia_reticulata
ENSSSCG00000010002	SF3A1	100	98.991	ENSPPYG00000011707	SF3A1	100	98.991	Pongo_abelii
ENSSSCG00000010002	SF3A1	57	99.057	ENSPCAG00000003266	SF3A1	57	99.057	Procavia_capensis
ENSSSCG00000010002	SF3A1	100	99.117	ENSPCOG00000026630	SF3A1	100	99.117	Propithecus_coquereli
ENSSSCG00000010002	SF3A1	100	94.830	ENSPVAG00000017719	SF3A1	94	98.389	Pteropus_vampyrus
ENSSSCG00000010002	SF3A1	100	84.355	ENSPNYG00000018706	sf3a1	99	85.403	Pundamilia_nyererei
ENSSSCG00000010002	SF3A1	97	83.825	ENSPNAG00000003721	sf3a1	99	84.467	Pygocentrus_nattereri
ENSSSCG00000010002	SF3A1	100	98.108	ENSRNOG00000005218	Sf3a1	100	98.108	Rattus_norvegicus
ENSSSCG00000010002	SF3A1	100	98.865	ENSRBIG00000032167	SF3A1	100	98.865	Rhinopithecus_bieti
ENSSSCG00000010002	SF3A1	100	98.865	ENSRROG00000044908	SF3A1	100	98.865	Rhinopithecus_roxellana
ENSSSCG00000010002	SF3A1	97	94.961	ENSSBOG00000021960	SF3A1	100	99.114	Saimiri_boliviensis_boliviensis
ENSSSCG00000010002	SF3A1	97	95.343	ENSSHAG00000003666	SF3A1	98	95.472	Sarcophilus_harrisii
ENSSSCG00000010002	SF3A1	100	83.500	ENSSFOG00015004579	sf3a1	99	85.128	Scleropages_formosus
ENSSSCG00000010002	SF3A1	100	81.887	ENSSMAG00000004275	sf3a1	97	83.137	Scophthalmus_maximus
ENSSSCG00000010002	SF3A1	100	84.025	ENSSDUG00000022219	sf3a1	99	84.527	Seriola_dumerili
ENSSSCG00000010002	SF3A1	100	84.025	ENSSLDG00000012642	sf3a1	99	84.527	Seriola_lalandi_dorsalis
ENSSSCG00000010002	SF3A1	97	95.725	ENSSARG00000005960	SF3A1	100	95.725	Sorex_araneus
ENSSSCG00000010002	SF3A1	96	91.839	ENSSPUG00000018863	SF3A1	100	91.542	Sphenodon_punctatus
ENSSSCG00000010002	SF3A1	100	84.528	ENSSPAG00000011856	sf3a1	99	84.910	Stegastes_partitus
ENSSSCG00000010002	SF3A1	95	93.931	ENSTGUG00000010547	SF3A1	99	93.256	Taeniopygia_guttata
ENSSSCG00000010002	SF3A1	100	81.635	ENSTRUG00000006118	sf3a1	97	82.484	Takifugu_rubripes
ENSSSCG00000010002	SF3A1	64	85.502	ENSTNIG00000005713	sf3a1	89	86.607	Tetraodon_nigroviridis
ENSSSCG00000010002	SF3A1	97	95.442	ENSTBEG00000012771	SF3A1	100	91.677	Tupaia_belangeri
ENSSSCG00000010002	SF3A1	100	99.244	ENSTTRG00000001535	SF3A1	100	99.244	Tursiops_truncatus
ENSSSCG00000010002	SF3A1	99	98.348	ENSUAMG00000006750	SF3A1	99	98.348	Ursus_americanus
ENSSSCG00000010002	SF3A1	99	98.214	ENSUMAG00000016665	SF3A1	98	99.222	Ursus_maritimus
ENSSSCG00000010002	SF3A1	100	99.369	ENSVVUG00000003075	SF3A1	100	99.369	Vulpes_vulpes
ENSSSCG00000010002	SF3A1	100	86.198	ENSXETG00000016144	sf3a1	100	85.947	Xenopus_tropicalis
ENSSSCG00000010002	SF3A1	100	82.893	ENSXCOG00000015653	sf3a1	97	84.314	Xiphophorus_couchianus
ENSSSCG00000010002	SF3A1	100	83.019	ENSXMAG00000002753	sf3a1	97	84.444	Xiphophorus_maculatus