EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000010160 (Gene tree)
Gene ID: 100152410
Gene Symbol: TARBP1
Alias: TRM3|TRMT3|TRP-185
Full Name: TAR (HIV-1) RNA binding protein 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 76691 bases
Position: chr14:56669622-56746312
Accession: 100152410
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000048976	SpoU_methylase	PF00588.19	7.7e-31	1	1
ENSSSCP00000049317	SpoU_methylase	PF00588.19	8e-31	1	1
ENSSSCP00000010836	SpoU_methylase	PF00588.19	8.2e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000011124	TARBP1-201	4842	XM_005670967	ENSSSCP00000010836	1613 (aa)	XP_005671024	F1RGW6
ENSSSCT00000057981	TARBP1-204	4145	-	ENSSSCP00000034843	1354 (aa)	-	A0A286ZT73
ENSSSCT00000049578	TARBP1-202	4755	-	ENSSSCP00000049317	1584 (aa)	-	A0A287AYS8
ENSSSCT00000056947	TARBP1-203	4608	-	ENSSSCP00000048976	1535 (aa)	-	A0A287AYM6

Gene Model

Click here to download ENSSSCG00000010160's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000010160's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000010160	TARBP1	99	85.392	ENSG00000059588	TARBP1	99	85.477	Homo_sapiens
ENSSSCG00000010160	TARBP1	99	45.658	ENSAPOG00000016419	si:dkey-85a20.4	99	42.599	Acanthochromis_polyacanthus
ENSSSCG00000010160	TARBP1	83	89.011	ENSAMEG00000003359	TARBP1	99	86.111	Ailuropoda_melanoleuca
ENSSSCG00000010160	TARBP1	99	45.592	ENSATEG00000020266	si:dkey-85a20.4	99	42.944	Anabas_testudineus
ENSSSCG00000010160	TARBP1	79	78.862	ENSAPLG00000007666	TARBP1	94	78.862	Anas_platyrhynchos
ENSSSCG00000010160	TARBP1	98	61.830	ENSACAG00000001142	TARBP1	98	58.958	Anolis_carolinensis
ENSSSCG00000010160	TARBP1	92	85.573	ENSANAG00000022031	TARBP1	96	84.951	Aotus_nancymaae
ENSSSCG00000010160	TARBP1	100	88.787	ENSBTAG00000004517	TARBP1	100	88.000	Bos_taurus
ENSSSCG00000010160	TARBP1	99	84.851	ENSCJAG00000018155	TARBP1	99	84.615	Callithrix_jacchus
ENSSSCG00000010160	TARBP1	88	88.115	ENSCAFG00000011533	TARBP1	100	86.630	Canis_familiaris
ENSSSCG00000010160	TARBP1	100	86.204	ENSCAFG00020027141	TARBP1	100	85.609	Canis_lupus_dingo
ENSSSCG00000010160	TARBP1	99	88.330	ENSCHIG00000011437	TARBP1	99	87.292	Capra_hircus
ENSSSCG00000010160	TARBP1	80	91.935	ENSTSYG00000010382	TARBP1	92	91.935	Carlito_syrichta
ENSSSCG00000010160	TARBP1	77	91.579	ENSCAPG00000010831	TARBP1	94	91.579	Cavia_aperea
ENSSSCG00000010160	TARBP1	99	75.968	ENSCPOG00000013995	TARBP1	99	75.832	Cavia_porcellus
ENSSSCG00000010160	TARBP1	99	85.392	ENSCCAG00000037278	TARBP1	99	85.108	Cebus_capucinus
ENSSSCG00000010160	TARBP1	99	85.663	ENSCATG00000011754	TARBP1	99	85.415	Cercocebus_atys
ENSSSCG00000010160	TARBP1	82	95.690	ENSCLAG00000003655	TARBP1	94	95.968	Chinchilla_lanigera
ENSSSCG00000010160	TARBP1	78	95.960	ENSCSAG00000010100	TARBP1	94	95.960	Chlorocebus_sabaeus
ENSSSCG00000010160	TARBP1	93	68.872	ENSCPBG00000005587	TARBP1	97	67.651	Chrysemys_picta_bellii
ENSSSCG00000010160	TARBP1	83	90.805	ENSCANG00000034343	TARBP1	99	86.103	Colobus_angolensis_palliatus
ENSSSCG00000010160	TARBP1	99	75.739	ENSCGRG00001016690	Tarbp1	99	74.291	Cricetulus_griseus_chok1gshd
ENSSSCG00000010160	TARBP1	92	75.739	ENSCGRG00000016893	Tarbp1	99	76.008	Cricetulus_griseus_crigri
ENSSSCG00000010160	TARBP1	99	40.729	ENSCSEG00000005255	si:dkey-85a20.4	99	43.182	Cynoglossus_semilaevis
ENSSSCG00000010160	TARBP1	99	41.151	ENSDARG00000079055	si:dkey-85a20.4	99	53.195	Danio_rerio
ENSSSCG00000010160	TARBP1	99	85.179	ENSDNOG00000008637	TARBP1	99	83.354	Dasypus_novemcinctus
ENSSSCG00000010160	TARBP1	79	88.983	ENSDORG00000007984	Tarbp1	95	88.235	Dipodomys_ordii
ENSSSCG00000010160	TARBP1	100	88.889	ENSEASG00005000252	TARBP1	100	88.752	Equus_asinus_asinus
ENSSSCG00000010160	TARBP1	100	89.440	ENSECAG00000023673	TARBP1	100	90.133	Equus_caballus
ENSSSCG00000010160	TARBP1	99	45.089	ENSELUG00000012193	si:dkey-85a20.4	86	44.904	Esox_lucius
ENSSSCG00000010160	TARBP1	100	84.696	ENSFCAG00000014183	TARBP1	100	84.757	Felis_catus
ENSSSCG00000010160	TARBP1	79	79.508	ENSFALG00000013565	TARBP1	94	79.508	Ficedula_albicollis
ENSSSCG00000010160	TARBP1	78	93.204	ENSFDAG00000001308	TARBP1	95	93.204	Fukomys_damarensis
ENSSSCG00000010160	TARBP1	97	54.144	ENSFHEG00000007565	si:dkey-85a20.4	99	54.144	Fundulus_heteroclitus
ENSSSCG00000010160	TARBP1	82	49.432	ENSGMOG00000004549	si:dkey-85a20.4	95	49.432	Gadus_morhua
ENSSSCG00000010160	TARBP1	96	63.380	ENSGALG00000011000	TARBP1	95	63.041	Gallus_gallus
ENSSSCG00000010160	TARBP1	99	45.280	ENSGAFG00000007387	si:dkey-85a20.4	85	44.554	Gambusia_affinis
ENSSSCG00000010160	TARBP1	85	45.714	ENSGACG00000005865	si:dkey-85a20.4	99	44.996	Gasterosteus_aculeatus
ENSSSCG00000010160	TARBP1	92	73.596	ENSGAGG00000012102	TARBP1	96	70.311	Gopherus_agassizii
ENSSSCG00000010160	TARBP1	84	91.892	ENSGGOG00000022879	TARBP1	94	91.892	Gorilla_gorilla
ENSSSCG00000010160	TARBP1	86	46.181	ENSHBUG00000008877	si:dkey-85a20.4	85	46.110	Haplochromis_burtoni
ENSSSCG00000010160	TARBP1	99	77.867	ENSHGLG00000011592	TARBP1	99	77.805	Heterocephalus_glaber_female
ENSSSCG00000010160	TARBP1	94	81.900	ENSHGLG00100015169	TARBP1	95	82.949	Heterocephalus_glaber_male
ENSSSCG00000010160	TARBP1	99	44.444	ENSIPUG00000005249	si:dkey-85a20.4	98	40.707	Ictalurus_punctatus
ENSSSCG00000010160	TARBP1	87	87.273	ENSSTOG00000032291	TARBP1	95	87.273	Ictidomys_tridecemlineatus
ENSSSCG00000010160	TARBP1	90	77.612	ENSJJAG00000017840	Tarbp1	99	73.440	Jaculus_jaculus
ENSSSCG00000010160	TARBP1	80	47.791	ENSKMAG00000017546	si:dkey-85a20.4	90	47.791	Kryptolebias_marmoratus
ENSSSCG00000010160	TARBP1	65	50.538	ENSLBEG00000012132	si:dkey-85a20.4	78	50.538	Labrus_bergylta
ENSSSCG00000010160	TARBP1	99	56.394	ENSLACG00000004337	TARBP1	95	56.128	Latimeria_chalumnae
ENSSSCG00000010160	TARBP1	99	50.812	ENSLOCG00000016214	si:dkey-85a20.4	100	46.341	Lepisosteus_oculatus
ENSSSCG00000010160	TARBP1	96	86.151	ENSLAFG00000011394	TARBP1	100	83.218	Loxodonta_africana
ENSSSCG00000010160	TARBP1	99	85.573	ENSMFAG00000041068	TARBP1	96	85.573	Macaca_fascicularis
ENSSSCG00000010160	TARBP1	99	85.482	ENSMMUG00000021703	TARBP1	99	82.852	Macaca_mulatta
ENSSSCG00000010160	TARBP1	99	85.663	ENSMNEG00000045002	TARBP1	99	85.538	Macaca_nemestrina
ENSSSCG00000010160	TARBP1	83	91.124	ENSMLEG00000044182	TARBP1	99	86.273	Mandrillus_leucophaeus
ENSSSCG00000010160	TARBP1	95	45.687	ENSMAMG00000021760	si:dkey-85a20.4	96	44.089	Mastacembelus_armatus
ENSSSCG00000010160	TARBP1	86	46.110	ENSMZEG00005005751	si:dkey-85a20.4	85	46.040	Maylandia_zebra
ENSSSCG00000010160	TARBP1	99	74.843	ENSMAUG00000020968	Tarbp1	99	73.428	Mesocricetus_auratus
ENSSSCG00000010160	TARBP1	99	77.538	ENSMICG00000015280	TARBP1	99	77.094	Microcebus_murinus
ENSSSCG00000010160	TARBP1	99	74.775	ENSMOCG00000004128	Tarbp1	99	73.189	Microtus_ochrogaster
ENSSSCG00000010160	TARBP1	99	43.806	ENSMMOG00000007795	si:dkey-85a20.4	99	41.041	Mola_mola
ENSSSCG00000010160	TARBP1	99	74.910	ENSMODG00000008504	TARBP1	99	72.286	Monodelphis_domestica
ENSSSCG00000010160	TARBP1	99	44.765	ENSMALG00000002916	si:dkey-85a20.4	99	42.523	Monopterus_albus
ENSSSCG00000010160	TARBP1	99	72.116	MGP_CAROLIEiJ_G0031729	Tarbp1	99	71.808	Mus_caroli
ENSSSCG00000010160	TARBP1	99	73.423	ENSMUSG00000090290	Tarbp1	98	73.333	Mus_musculus
ENSSSCG00000010160	TARBP1	99	72.435	MGP_PahariEiJ_G0023326	Tarbp1	99	72.373	Mus_pahari
ENSSSCG00000010160	TARBP1	99	72.074	MGP_SPRETEiJ_G0032846	Tarbp1	98	73.153	Mus_spretus
ENSSSCG00000010160	TARBP1	76	91.379	ENSMPUG00000002802	TARBP1	94	91.379	Mustela_putorius_furo
ENSSSCG00000010160	TARBP1	83	81.319	ENSMLUG00000002414	TARBP1	95	80.874	Myotis_lucifugus
ENSSSCG00000010160	TARBP1	99	85.302	ENSNLEG00000002518	TARBP1	99	85.354	Nomascus_leucogenys
ENSSSCG00000010160	TARBP1	71	77.707	ENSMEUG00000011370	-	67	77.707	Notamacropus_eugenii
ENSSSCG00000010160	TARBP1	74	86.522	ENSOPRG00000013822	TARBP1	74	86.522	Ochotona_princeps
ENSSSCG00000010160	TARBP1	99	75.790	ENSODEG00000005238	TARBP1	96	75.651	Octodon_degus
ENSSSCG00000010160	TARBP1	85	46.400	ENSONIG00000009789	si:dkey-85a20.4	99	46.170	Oreochromis_niloticus
ENSSSCG00000010160	TARBP1	99	85.194	ENSOCUG00000017418	TARBP1	99	84.360	Oryctolagus_cuniculus
ENSSSCG00000010160	TARBP1	99	43.728	ENSORLG00000010529	si:dkey-85a20.4	99	40.995	Oryzias_latipes
ENSSSCG00000010160	TARBP1	99	43.459	ENSORLG00020019264	si:dkey-85a20.4	99	40.821	Oryzias_latipes_hni
ENSSSCG00000010160	TARBP1	99	43.548	ENSORLG00015003276	si:dkey-85a20.4	99	40.846	Oryzias_latipes_hsok
ENSSSCG00000010160	TARBP1	99	82.609	ENSOGAG00000002379	TARBP1	99	81.577	Otolemur_garnettii
ENSSSCG00000010160	TARBP1	96	89.796	ENSOARG00000003434	TARBP1	99	86.731	Ovis_aries
ENSSSCG00000010160	TARBP1	83	92.090	ENSPPAG00000028097	TARBP1	94	92.090	Pan_paniscus
ENSSSCG00000010160	TARBP1	100	84.940	ENSPPRG00000013561	TARBP1	100	76.695	Panthera_pardus
ENSSSCG00000010160	TARBP1	83	87.416	ENSPTIG00000009281	TARBP1	100	87.193	Panthera_tigris_altaica
ENSSSCG00000010160	TARBP1	99	85.392	ENSPTRG00000002124	TARBP1	99	85.249	Pan_troglodytes
ENSSSCG00000010160	TARBP1	99	85.753	ENSPANG00000021933	TARBP1	99	85.477	Papio_anubis
ENSSSCG00000010160	TARBP1	99	46.820	ENSPKIG00000016716	si:dkey-85a20.4	99	42.080	Paramormyrops_kingsleyae
ENSSSCG00000010160	TARBP1	78	81.818	ENSPSIG00000010699	TARBP1	95	81.818	Pelodiscus_sinensis
ENSSSCG00000010160	TARBP1	98	75.000	ENSPEMG00000006888	Tarbp1	100	74.931	Peromyscus_maniculatus_bairdii
ENSSSCG00000010160	TARBP1	92	83.333	ENSPCIG00000029710	TARBP1	99	83.333	Phascolarctos_cinereus
ENSSSCG00000010160	TARBP1	85	45.074	ENSPFOG00000013020	si:dkey-85a20.4	99	45.074	Poecilia_formosa
ENSSSCG00000010160	TARBP1	99	45.288	ENSPLAG00000006044	si:dkey-85a20.4	85	44.922	Poecilia_latipinna
ENSSSCG00000010160	TARBP1	99	45.288	ENSPMEG00000017857	si:dkey-85a20.4	96	45.026	Poecilia_mexicana
ENSSSCG00000010160	TARBP1	99	45.184	ENSPREG00000022753	si:dkey-85a20.4	85	44.993	Poecilia_reticulata
ENSSSCG00000010160	TARBP1	96	84.220	ENSPPYG00000000102	TARBP1	99	85.637	Pongo_abelii
ENSSSCG00000010160	TARBP1	85	92.617	ENSPCAG00000004808	TARBP1	85	92.617	Procavia_capensis
ENSSSCG00000010160	TARBP1	99	83.723	ENSPCOG00000005666	TARBP1	100	83.714	Propithecus_coquereli
ENSSSCG00000010160	TARBP1	99	73.502	ENSPVAG00000014798	TARBP1	95	75.115	Pteropus_vampyrus
ENSSSCG00000010160	TARBP1	86	45.011	ENSPNYG00000019135	si:dkey-85a20.4	85	45.028	Pundamilia_nyererei
ENSSSCG00000010160	TARBP1	99	68.577	ENSRNOG00000053574	Tarbp1	99	68.145	Rattus_norvegicus
ENSSSCG00000010160	TARBP1	99	79.031	ENSRBIG00000043362	TARBP1	99	79.031	Rhinopithecus_bieti
ENSSSCG00000010160	TARBP1	99	85.032	ENSRROG00000029527	TARBP1	99	81.600	Rhinopithecus_roxellana
ENSSSCG00000010160	TARBP1	88	89.937	ENSSBOG00000034503	TARBP1	95	90.419	Saimiri_boliviensis_boliviensis
ENSSSCG00000010160	TARBP1	82	76.582	ENSSHAG00000000013	TARBP1	99	75.167	Sarcophilus_harrisii
ENSSSCG00000010160	TARBP1	79	52.459	ENSSFOG00015002660	si:dkey-85a20.4	93	52.459	Scleropages_formosus
ENSSSCG00000010160	TARBP1	91	44.977	ENSSMAG00000007081	si:dkey-85a20.4	99	43.452	Scophthalmus_maximus
ENSSSCG00000010160	TARBP1	99	42.232	ENSSDUG00000023566	si:dkey-85a20.4	85	45.316	Seriola_dumerili
ENSSSCG00000010160	TARBP1	91	46.850	ENSSLDG00000020200	si:dkey-85a20.4	86	46.921	Seriola_lalandi_dorsalis
ENSSSCG00000010160	TARBP1	88	92.683	ENSSARG00000012207	TARBP1	84	92.683	Sorex_araneus
ENSSSCG00000010160	TARBP1	99	65.836	ENSSPUG00000015364	TARBP1	99	64.176	Sphenodon_punctatus
ENSSSCG00000010160	TARBP1	99	45.009	ENSSPAG00000007213	si:dkey-85a20.4	91	43.984	Stegastes_partitus
ENSSSCG00000010160	TARBP1	79	79.508	ENSTGUG00000010214	TARBP1	94	79.508	Taeniopygia_guttata
ENSSSCG00000010160	TARBP1	94	41.482	ENSTNIG00000016586	si:dkey-85a20.4	99	44.485	Tetraodon_nigroviridis
ENSSSCG00000010160	TARBP1	91	91.813	ENSTTRG00000008707	TARBP1	96	92.169	Tursiops_truncatus
ENSSSCG00000010160	TARBP1	81	88.652	ENSUMAG00000006730	TARBP1	99	85.929	Ursus_maritimus
ENSSSCG00000010160	TARBP1	79	92.784	ENSVPAG00000007665	TARBP1	87	92.784	Vicugna_pacos
ENSSSCG00000010160	TARBP1	87	85.856	ENSVVUG00000007460	TARBP1	99	85.785	Vulpes_vulpes
ENSSSCG00000010160	TARBP1	83	60.947	ENSXETG00000016224	tarbp1	94	62.147	Xenopus_tropicalis
ENSSSCG00000010160	TARBP1	79	49.113	ENSXCOG00000011779	si:dkey-85a20.4	93	49.113	Xiphophorus_couchianus
ENSSSCG00000010160	TARBP1	68	43.417	ENSXMAG00000009600	si:dkey-85a20.4	100	43.271	Xiphophorus_maculatus