EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000010431 (Gene tree)
Gene ID: 100155074
Gene Symbol: A1CF
Alias: ACF|ACF64|ACF65|APOBEC1CF|ASP
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 78676 bases
Position: chr14:98908606-98987281
Accession: 100155074
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000011120	DND1_DSRM	PF14709.7	1.3e-24	1	1
ENSSSCP00000039189	DND1_DSRM	PF14709.7	1.3e-24	1	1
ENSSSCP00000011120	RRM_1	PF00076.22	1.6e-40	1	3
ENSSSCP00000011120	RRM_1	PF00076.22	1.6e-40	2	3
ENSSSCP00000011120	RRM_1	PF00076.22	1.6e-40	3	3
ENSSSCP00000039189	RRM_1	PF00076.22	1.6e-40	1	3
ENSSSCP00000039189	RRM_1	PF00076.22	1.6e-40	2	3
ENSSSCP00000039189	RRM_1	PF00076.22	1.6e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000011416	A1CF-202	6607	XM_005671251	ENSSSCP00000011120	595 (aa)	XP_005671308	F1SD00
ENSSSCT00000062282	A1CF-201	6741	XM_021072458	ENSSSCP00000039189	595 (aa)	XP_020928117	F1SD00

Gene Model

Click here to download ENSSSCG00000010431's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000010431's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000010431	A1CF	86	72.667	ENSSSCG00000008994	RBM46	93	72.667
ENSSSCG00000010431	A1CF	74	59.031	ENSSSCG00000008796	RBM47	73	59.081
ENSSSCG00000010431	A1CF	53	52.215	ENSSSCG00000023761	HNRNPR	59	51.724
ENSSSCG00000010431	A1CF	51	52.427	ENSSSCG00000004294	-	82	45.570

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000010431	A1CF	100	96.134	ENSG00000148584	A1CF	100	99.502	Homo_sapiens
ENSSSCG00000010431	A1CF	100	73.798	ENSAPOG00000008259	a1cf	100	73.798	Acanthochromis_polyacanthus
ENSSSCG00000010431	A1CF	100	94.790	ENSAMEG00000000523	A1CF	100	95.126	Ailuropoda_melanoleuca
ENSSSCG00000010431	A1CF	100	76.509	ENSACIG00000008632	a1cf	100	77.651	Amphilophus_citrinellus
ENSSSCG00000010431	A1CF	100	74.468	ENSAOCG00000023744	a1cf	96	84.348	Amphiprion_ocellaris
ENSSSCG00000010431	A1CF	100	75.450	ENSAPEG00000009537	a1cf	100	76.268	Amphiprion_percula
ENSSSCG00000010431	A1CF	100	76.710	ENSATEG00000013720	a1cf	100	77.850	Anabas_testudineus
ENSSSCG00000010431	A1CF	100	88.758	ENSAPLG00000002964	A1CF	100	88.591	Anas_platyrhynchos
ENSSSCG00000010431	A1CF	100	83.557	ENSACAG00000015269	A1CF	100	83.221	Anolis_carolinensis
ENSSSCG00000010431	A1CF	100	95.126	ENSANAG00000019974	A1CF	100	95.126	Aotus_nancymaae
ENSSSCG00000010431	A1CF	100	74.183	ENSACLG00000017428	a1cf	100	75.327	Astatotilapia_calliptera
ENSSSCG00000010431	A1CF	100	76.033	ENSAMXG00000018180	a1cf	100	76.033	Astyanax_mexicanus
ENSSSCG00000010431	A1CF	100	96.471	ENSBTAG00000021195	A1CF	100	96.886	Bos_taurus
ENSSSCG00000010431	A1CF	100	96.471	ENSCJAG00000005045	A1CF	100	96.471	Callithrix_jacchus
ENSSSCG00000010431	A1CF	100	95.798	ENSCAFG00000015581	A1CF	100	95.798	Canis_familiaris
ENSSSCG00000010431	A1CF	100	95.798	ENSCAFG00020026421	A1CF	100	95.798	Canis_lupus_dingo
ENSSSCG00000010431	A1CF	100	96.975	ENSCHIG00000020411	A1CF	100	96.975	Capra_hircus
ENSSSCG00000010431	A1CF	95	94.504	ENSTSYG00000001755	A1CF	100	93.772	Carlito_syrichta
ENSSSCG00000010431	A1CF	100	82.822	ENSCAPG00000017386	A1CF	100	82.822	Cavia_aperea
ENSSSCG00000010431	A1CF	100	94.790	ENSCPOG00000009807	A1CF	100	94.790	Cavia_porcellus
ENSSSCG00000010431	A1CF	100	96.303	ENSCCAG00000018168	A1CF	100	96.303	Cebus_capucinus
ENSSSCG00000010431	A1CF	100	93.950	ENSCATG00000043715	A1CF	100	93.782	Cercocebus_atys
ENSSSCG00000010431	A1CF	100	94.631	ENSCLAG00000010424	A1CF	100	94.631	Chinchilla_lanigera
ENSSSCG00000010431	A1CF	100	95.462	ENSCSAG00000007032	A1CF	100	95.462	Chlorocebus_sabaeus
ENSSSCG00000010431	A1CF	98	89.831	ENSCHOG00000009089	A1CF	98	89.831	Choloepus_hoffmanni
ENSSSCG00000010431	A1CF	100	89.430	ENSCPBG00000026464	A1CF	100	89.430	Chrysemys_picta_bellii
ENSSSCG00000010431	A1CF	100	95.630	ENSCANG00000038032	A1CF	100	95.630	Colobus_angolensis_palliatus
ENSSSCG00000010431	A1CF	100	94.118	ENSCGRG00001017413	A1cf	100	94.118	Cricetulus_griseus_chok1gshd
ENSSSCG00000010431	A1CF	100	93.613	ENSCGRG00000017332	A1cf	100	93.613	Cricetulus_griseus_crigri
ENSSSCG00000010431	A1CF	100	76.080	ENSCSEG00000002361	a1cf	100	77.243	Cynoglossus_semilaevis
ENSSSCG00000010431	A1CF	100	75.407	ENSCVAG00000010520	a1cf	100	76.710	Cyprinodon_variegatus
ENSSSCG00000010431	A1CF	100	78.536	ENSDARG00000002968	a1cf	100	79.867	Danio_rerio
ENSSSCG00000010431	A1CF	100	94.790	ENSDNOG00000002829	A1CF	100	94.790	Dasypus_novemcinctus
ENSSSCG00000010431	A1CF	81	93.116	ENSETEG00000012527	A1CF	81	93.116	Echinops_telfairi
ENSSSCG00000010431	A1CF	100	97.487	ENSEASG00005012924	A1CF	100	97.487	Equus_asinus_asinus
ENSSSCG00000010431	A1CF	100	96.985	ENSECAG00000010424	A1CF	100	96.985	Equus_caballus
ENSSSCG00000010431	A1CF	78	82.013	ENSEEUG00000000013	A1CF	97	83.111	Erinaceus_europaeus
ENSSSCG00000010431	A1CF	100	79.201	ENSELUG00000003159	a1cf	100	80.033	Esox_lucius
ENSSSCG00000010431	A1CF	100	92.437	ENSFCAG00000011179	A1CF	100	92.941	Felis_catus
ENSSSCG00000010431	A1CF	100	86.409	ENSFALG00000013183	A1CF	100	86.242	Ficedula_albicollis
ENSSSCG00000010431	A1CF	100	93.277	ENSFDAG00000019371	A1CF	100	93.277	Fukomys_damarensis
ENSSSCG00000010431	A1CF	100	71.173	ENSFHEG00000019652	a1cf	96	82.812	Fundulus_heteroclitus
ENSSSCG00000010431	A1CF	100	72.607	ENSGMOG00000018943	a1cf	100	72.442	Gadus_morhua
ENSSSCG00000010431	A1CF	95	88.142	ENSGALG00000003765	A1CF	97	87.965	Gallus_gallus
ENSSSCG00000010431	A1CF	100	70.395	ENSGAFG00000014868	a1cf	100	71.382	Gambusia_affinis
ENSSSCG00000010431	A1CF	100	75.000	ENSGACG00000010241	a1cf	100	75.493	Gasterosteus_aculeatus
ENSSSCG00000010431	A1CF	94	89.343	ENSGAGG00000016508	A1CF	97	89.343	Gopherus_agassizii
ENSSSCG00000010431	A1CF	100	95.966	ENSGGOG00000009670	A1CF	100	95.798	Gorilla_gorilla
ENSSSCG00000010431	A1CF	100	75.856	ENSHBUG00000021959	a1cf	100	77.651	Haplochromis_burtoni
ENSSSCG00000010431	A1CF	100	94.958	ENSHGLG00000008955	A1CF	100	94.958	Heterocephalus_glaber_female
ENSSSCG00000010431	A1CF	100	94.286	ENSHGLG00100000518	A1CF	100	94.286	Heterocephalus_glaber_male
ENSSSCG00000010431	A1CF	100	70.847	ENSHCOG00000017669	a1cf	100	73.659	Hippocampus_comes
ENSSSCG00000010431	A1CF	89	83.271	ENSIPUG00000010367	a1cf	95	83.677	Ictalurus_punctatus
ENSSSCG00000010431	A1CF	100	77.886	ENSKMAG00000006568	a1cf	100	78.374	Kryptolebias_marmoratus
ENSSSCG00000010431	A1CF	99	76.020	ENSLBEG00000020994	a1cf	98	77.504	Labrus_bergylta
ENSSSCG00000010431	A1CF	100	81.469	ENSLACG00000008061	A1CF	100	81.302	Latimeria_chalumnae
ENSSSCG00000010431	A1CF	100	83.000	ENSLOCG00000006302	a1cf	100	83.000	Lepisosteus_oculatus
ENSSSCG00000010431	A1CF	100	94.286	ENSLAFG00000015462	A1CF	100	94.286	Loxodonta_africana
ENSSSCG00000010431	A1CF	100	94.286	ENSMFAG00000035948	A1CF	100	94.118	Macaca_fascicularis
ENSSSCG00000010431	A1CF	100	94.286	ENSMMUG00000007077	A1CF	100	94.118	Macaca_mulatta
ENSSSCG00000010431	A1CF	100	93.950	ENSMNEG00000031454	A1CF	100	93.782	Macaca_nemestrina
ENSSSCG00000010431	A1CF	100	95.294	ENSMLEG00000037223	A1CF	100	95.126	Mandrillus_leucophaeus
ENSSSCG00000010431	A1CF	100	73.486	ENSMAMG00000010402	a1cf	100	75.777	Mastacembelus_armatus
ENSSSCG00000010431	A1CF	100	76.833	ENSMZEG00005013245	a1cf	100	77.833	Maylandia_zebra
ENSSSCG00000010431	A1CF	100	88.275	ENSMGAG00000001507	A1CF	100	88.107	Meleagris_gallopavo
ENSSSCG00000010431	A1CF	100	93.613	ENSMAUG00000007422	A1cf	100	93.613	Mesocricetus_auratus
ENSSSCG00000010431	A1CF	100	92.977	ENSMICG00000003377	A1CF	100	93.144	Microcebus_murinus
ENSSSCG00000010431	A1CF	100	93.782	ENSMOCG00000021536	A1cf	100	93.782	Microtus_ochrogaster
ENSSSCG00000010431	A1CF	100	67.921	ENSMMOG00000009422	a1cf	100	70.049	Mola_mola
ENSSSCG00000010431	A1CF	92	89.580	ENSMODG00000016478	A1CF	97	90.926	Monodelphis_domestica
ENSSSCG00000010431	A1CF	100	73.167	ENSMALG00000012992	a1cf	100	72.833	Monopterus_albus
ENSSSCG00000010431	A1CF	100	92.941	MGP_CAROLIEiJ_G0022873	A1cf	100	92.941	Mus_caroli
ENSSSCG00000010431	A1CF	100	92.941	ENSMUSG00000052595	A1cf	99	95.526	Mus_musculus
ENSSSCG00000010431	A1CF	100	92.101	MGP_PahariEiJ_G0014366	A1cf	100	92.101	Mus_pahari
ENSSSCG00000010431	A1CF	100	92.605	MGP_SPRETEiJ_G0023792	A1cf	100	92.605	Mus_spretus
ENSSSCG00000010431	A1CF	100	88.739	ENSMPUG00000016971	A1CF	100	88.908	Mustela_putorius_furo
ENSSSCG00000010431	A1CF	100	95.798	ENSMLUG00000016071	A1CF	100	95.798	Myotis_lucifugus
ENSSSCG00000010431	A1CF	100	94.790	ENSNGAG00000015136	A1cf	100	94.790	Nannospalax_galili
ENSSSCG00000010431	A1CF	100	76.183	ENSNBRG00000001712	a1cf	100	77.977	Neolamprologus_brichardi
ENSSSCG00000010431	A1CF	100	96.471	ENSNLEG00000012028	A1CF	100	96.471	Nomascus_leucogenys
ENSSSCG00000010431	A1CF	94	88.988	ENSMEUG00000015909	A1CF	100	88.988	Notamacropus_eugenii
ENSSSCG00000010431	A1CF	88	84.762	ENSOPRG00000010667	A1CF	97	84.848	Ochotona_princeps
ENSSSCG00000010431	A1CF	100	76.346	ENSONIG00000019105	a1cf	100	77.325	Oreochromis_niloticus
ENSSSCG00000010431	A1CF	78	89.293	ENSOANG00000007360	A1CF	99	89.293	Ornithorhynchus_anatinus
ENSSSCG00000010431	A1CF	100	92.450	ENSOCUG00000011587	A1CF	100	92.785	Oryctolagus_cuniculus
ENSSSCG00000010431	A1CF	100	74.510	ENSORLG00000013342	a1cf	100	74.510	Oryzias_latipes
ENSSSCG00000010431	A1CF	100	75.856	ENSORLG00020000586	a1cf	100	76.183	Oryzias_latipes_hni
ENSSSCG00000010431	A1CF	100	75.693	ENSORLG00015018569	a1cf	100	76.020	Oryzias_latipes_hsok
ENSSSCG00000010431	A1CF	100	75.941	ENSOMEG00000013531	a1cf	100	75.777	Oryzias_melastigma
ENSSSCG00000010431	A1CF	100	93.445	ENSOGAG00000012884	A1CF	100	93.613	Otolemur_garnettii
ENSSSCG00000010431	A1CF	100	96.975	ENSOARG00000013695	A1CF	100	96.975	Ovis_aries
ENSSSCG00000010431	A1CF	97	93.934	ENSPPAG00000028115	A1CF	99	97.972	Pan_paniscus
ENSSSCG00000010431	A1CF	100	94.118	ENSPPRG00000012180	A1CF	100	94.622	Panthera_pardus
ENSSSCG00000010431	A1CF	100	94.118	ENSPTIG00000021223	A1CF	100	94.622	Panthera_tigris_altaica
ENSSSCG00000010431	A1CF	100	95.798	ENSPTRG00000002508	A1CF	100	95.630	Pan_troglodytes
ENSSSCG00000010431	A1CF	100	94.286	ENSPANG00000021988	A1CF	100	94.118	Papio_anubis
ENSSSCG00000010431	A1CF	100	81.364	ENSPKIG00000025176	a1cf	100	81.364	Paramormyrops_kingsleyae
ENSSSCG00000010431	A1CF	100	87.919	ENSPSIG00000010318	A1CF	100	87.919	Pelodiscus_sinensis
ENSSSCG00000010431	A1CF	88	71.619	ENSPMGG00000013359	a1cf	89	72.190	Periophthalmus_magnuspinnatus
ENSSSCG00000010431	A1CF	100	93.782	ENSPEMG00000015021	A1cf	100	93.782	Peromyscus_maniculatus_bairdii
ENSSSCG00000010431	A1CF	100	88.926	ENSPCIG00000002175	A1CF	100	88.926	Phascolarctos_cinereus
ENSSSCG00000010431	A1CF	100	76.710	ENSPFOG00000006683	a1cf	100	78.013	Poecilia_formosa
ENSSSCG00000010431	A1CF	100	76.547	ENSPFOG00000007437	-	100	77.850	Poecilia_formosa
ENSSSCG00000010431	A1CF	100	75.407	ENSPLAG00000000026	a1cf	100	76.710	Poecilia_latipinna
ENSSSCG00000010431	A1CF	100	75.407	ENSPLAG00000001210	-	100	76.710	Poecilia_latipinna
ENSSSCG00000010431	A1CF	100	68.137	ENSPMEG00000000921	a1cf	100	69.444	Poecilia_mexicana
ENSSSCG00000010431	A1CF	100	69.281	ENSPMEG00000015529	-	100	70.588	Poecilia_mexicana
ENSSSCG00000010431	A1CF	100	76.384	ENSPREG00000016298	a1cf	100	77.687	Poecilia_reticulata
ENSSSCG00000010431	A1CF	100	94.958	ENSPPYG00000002819	A1CF	100	94.958	Pongo_abelii
ENSSSCG00000010431	A1CF	79	73.150	ENSPCAG00000006463	A1CF	70	85.714	Procavia_capensis
ENSSSCG00000010431	A1CF	100	95.134	ENSPCOG00000024172	A1CF	100	95.134	Propithecus_coquereli
ENSSSCG00000010431	A1CF	100	77.162	ENSPNYG00000017944	a1cf	100	78.956	Pundamilia_nyererei
ENSSSCG00000010431	A1CF	100	80.960	ENSPNAG00000007704	a1cf	100	80.795	Pygocentrus_nattereri
ENSSSCG00000010431	A1CF	100	91.597	ENSRNOG00000033195	A1cf	100	91.597	Rattus_norvegicus
ENSSSCG00000010431	A1CF	100	88.945	ENSRBIG00000042892	A1CF	100	91.977	Rhinopithecus_bieti
ENSSSCG00000010431	A1CF	100	95.630	ENSRROG00000041398	A1CF	100	95.462	Rhinopithecus_roxellana
ENSSSCG00000010431	A1CF	100	96.471	ENSSBOG00000021930	A1CF	100	96.471	Saimiri_boliviensis_boliviensis
ENSSSCG00000010431	A1CF	100	89.933	ENSSHAG00000005096	A1CF	100	89.933	Sarcophilus_harrisii
ENSSSCG00000010431	A1CF	100	79.768	ENSSFOG00015011774	a1cf	100	80.100	Scleropages_formosus
ENSSSCG00000010431	A1CF	100	76.547	ENSSMAG00000013271	a1cf	100	76.710	Scophthalmus_maximus
ENSSSCG00000010431	A1CF	100	77.280	ENSSDUG00000013930	a1cf	100	77.944	Seriola_dumerili
ENSSSCG00000010431	A1CF	100	71.287	ENSSLDG00000004290	a1cf	100	70.792	Seriola_lalandi_dorsalis
ENSSSCG00000010431	A1CF	95	84.276	ENSSARG00000005940	A1CF	96	84.276	Sorex_araneus
ENSSSCG00000010431	A1CF	95	87.698	ENSSPUG00000006797	A1CF	95	87.698	Sphenodon_punctatus
ENSSSCG00000010431	A1CF	100	88.127	ENSTGUG00000005090	A1CF	100	87.793	Taeniopygia_guttata
ENSSSCG00000010431	A1CF	100	75.367	ENSTRUG00000001982	a1cf	100	75.204	Takifugu_rubripes
ENSSSCG00000010431	A1CF	100	75.610	ENSTNIG00000003580	a1cf	100	75.447	Tetraodon_nigroviridis
ENSSSCG00000010431	A1CF	97	89.081	ENSTTRG00000013190	A1CF	95	89.081	Tursiops_truncatus
ENSSSCG00000010431	A1CF	100	93.782	ENSUAMG00000020065	A1CF	100	93.782	Ursus_americanus
ENSSSCG00000010431	A1CF	100	94.790	ENSUMAG00000011162	A1CF	100	94.790	Ursus_maritimus
ENSSSCG00000010431	A1CF	87	90.403	ENSVPAG00000006130	A1CF	86	90.403	Vicugna_pacos
ENSSSCG00000010431	A1CF	100	94.286	ENSVVUG00000002504	A1CF	100	94.286	Vulpes_vulpes
ENSSSCG00000010431	A1CF	100	78.667	ENSXETG00000006611	a1cf	100	78.500	Xenopus_tropicalis
ENSSSCG00000010431	A1CF	100	76.721	ENSXCOG00000003302	a1cf	100	77.541	Xiphophorus_couchianus
ENSSSCG00000010431	A1CF	100	77.869	ENSXMAG00000016703	a1cf	100	78.689	Xiphophorus_maculatus