EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000010518 (Gene tree)
Gene ID: 100153550
Gene Symbol: EXOSC1
Alias: CGI-108|CSL4|Csl4p|SKI4|Ski4p|hCsl4p|p13
Full Name: exosome component 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 8273 bases
Position: chr14:108834606-108842878
Accession: 100153550
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000011207	EXOSC1	PF10447.9	1.1e-14	1	1
ENSSSCP00000011207	ECR1_N	PF14382.6	1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000011508	EXOSC1-201	2617	XM_001928803	ENSSSCP00000011207	214 (aa)	XP_001928838	F1S8Y4

Gene Model

Click here to download ENSSSCG00000010518's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000010518's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000010518	EXOSC1	91	96.410	ENSG00000171311	EXOSC1	100	96.410	Homo_sapiens
ENSSSCG00000010518	EXOSC1	89	79.581	ENSAPOG00000007822	exosc1	98	79.581	Acanthochromis_polyacanthus
ENSSSCG00000010518	EXOSC1	91	98.974	ENSAMEG00000000129	EXOSC1	100	98.974	Ailuropoda_melanoleuca
ENSSSCG00000010518	EXOSC1	88	79.255	ENSACIG00000018956	exosc1	92	79.255	Amphilophus_citrinellus
ENSSSCG00000010518	EXOSC1	89	79.581	ENSAOCG00000010699	exosc1	98	79.581	Amphiprion_ocellaris
ENSSSCG00000010518	EXOSC1	84	70.391	ENSAPEG00000012690	exosc1	96	70.391	Amphiprion_percula
ENSSSCG00000010518	EXOSC1	89	79.058	ENSATEG00000018683	exosc1	98	79.058	Anabas_testudineus
ENSSSCG00000010518	EXOSC1	90	84.974	ENSACAG00000002101	EXOSC1	99	84.974	Anolis_carolinensis
ENSSSCG00000010518	EXOSC1	91	97.949	ENSANAG00000034669	EXOSC1	100	97.949	Aotus_nancymaae
ENSSSCG00000010518	EXOSC1	89	79.581	ENSACLG00000021243	exosc1	98	79.581	Astatotilapia_calliptera
ENSSSCG00000010518	EXOSC1	89	81.152	ENSAMXG00000011116	exosc1	98	81.152	Astyanax_mexicanus
ENSSSCG00000010518	EXOSC1	91	98.462	ENSBTAG00000012699	EXOSC1	100	98.462	Bos_taurus
ENSSSCG00000010518	EXOSC1	84	34.043	WBGene00012966	exos-1	90	34.043	Caenorhabditis_elegans
ENSSSCG00000010518	EXOSC1	91	97.436	ENSCJAG00000016586	EXOSC1	100	97.436	Callithrix_jacchus
ENSSSCG00000010518	EXOSC1	92	98.477	ENSCAFG00000009068	EXOSC1	95	98.477	Canis_familiaris
ENSSSCG00000010518	EXOSC1	92	98.477	ENSCAFG00020006002	EXOSC1	95	98.477	Canis_lupus_dingo
ENSSSCG00000010518	EXOSC1	91	98.462	ENSCHIG00000015253	EXOSC1	100	98.462	Capra_hircus
ENSSSCG00000010518	EXOSC1	91	97.949	ENSTSYG00000000760	EXOSC1	100	97.949	Carlito_syrichta
ENSSSCG00000010518	EXOSC1	91	97.436	ENSCPOG00000001173	EXOSC1	100	97.436	Cavia_porcellus
ENSSSCG00000010518	EXOSC1	91	56.853	ENSCCAG00000023986	EXOSC1	100	56.853	Cebus_capucinus
ENSSSCG00000010518	EXOSC1	91	96.410	ENSCATG00000034114	EXOSC1	100	96.410	Cercocebus_atys
ENSSSCG00000010518	EXOSC1	91	97.949	ENSCLAG00000002463	EXOSC1	100	97.949	Chinchilla_lanigera
ENSSSCG00000010518	EXOSC1	91	95.897	ENSCSAG00000005870	EXOSC1	100	95.897	Chlorocebus_sabaeus
ENSSSCG00000010518	EXOSC1	87	83.957	ENSCHOG00000006477	EXOSC1	100	83.957	Choloepus_hoffmanni
ENSSSCG00000010518	EXOSC1	50	80.189	ENSCPBG00000011949	EXOSC1	88	80.189	Chrysemys_picta_bellii
ENSSSCG00000010518	EXOSC1	87	56.684	ENSCING00000022734	-	89	56.684	Ciona_intestinalis
ENSSSCG00000010518	EXOSC1	87	58.289	ENSCSAVG00000010865	-	95	58.289	Ciona_savignyi
ENSSSCG00000010518	EXOSC1	91	96.410	ENSCANG00000034159	EXOSC1	100	96.410	Colobus_angolensis_palliatus
ENSSSCG00000010518	EXOSC1	91	96.410	ENSCGRG00001000335	Exosc1	100	96.410	Cricetulus_griseus_chok1gshd
ENSSSCG00000010518	EXOSC1	91	96.410	ENSCGRG00000011602	Exosc1	100	96.410	Cricetulus_griseus_crigri
ENSSSCG00000010518	EXOSC1	89	67.016	ENSCSEG00000007895	exosc1	95	67.016	Cynoglossus_semilaevis
ENSSSCG00000010518	EXOSC1	89	76.440	ENSCVAG00000016748	exosc1	98	76.440	Cyprinodon_variegatus
ENSSSCG00000010518	EXOSC1	89	80.105	ENSDARG00000059841	exosc1	98	80.105	Danio_rerio
ENSSSCG00000010518	EXOSC1	69	97.297	ENSDNOG00000007983	EXOSC1	100	97.297	Dasypus_novemcinctus
ENSSSCG00000010518	EXOSC1	91	96.923	ENSDORG00000016528	Exosc1	100	96.923	Dipodomys_ordii
ENSSSCG00000010518	EXOSC1	86	48.148	FBgn0032346	Csl4	92	48.148	Drosophila_melanogaster
ENSSSCG00000010518	EXOSC1	91	94.872	ENSETEG00000002469	-	100	94.872	Echinops_telfairi
ENSSSCG00000010518	EXOSC1	90	62.755	ENSEBUG00000008164	exosc1	98	62.755	Eptatretus_burgeri
ENSSSCG00000010518	EXOSC1	91	88.205	ENSEASG00005008684	EXOSC1	100	88.205	Equus_asinus_asinus
ENSSSCG00000010518	EXOSC1	56	78.992	ENSECAG00000010621	EXOSC1	71	78.992	Equus_caballus
ENSSSCG00000010518	EXOSC1	91	96.923	ENSEEUG00000005647	EXOSC1	100	96.923	Erinaceus_europaeus
ENSSSCG00000010518	EXOSC1	86	80.435	ENSELUG00000017369	exosc1	81	80.435	Esox_lucius
ENSSSCG00000010518	EXOSC1	92	98.985	ENSFCAG00000040563	EXOSC1	95	98.985	Felis_catus
ENSSSCG00000010518	EXOSC1	91	82.051	ENSFALG00000008450	EXOSC1	100	82.051	Ficedula_albicollis
ENSSSCG00000010518	EXOSC1	91	97.949	ENSFDAG00000000846	EXOSC1	100	97.949	Fukomys_damarensis
ENSSSCG00000010518	EXOSC1	89	76.440	ENSFHEG00000009154	exosc1	98	76.440	Fundulus_heteroclitus
ENSSSCG00000010518	EXOSC1	89	79.581	ENSGMOG00000008993	exosc1	98	79.581	Gadus_morhua
ENSSSCG00000010518	EXOSC1	91	72.308	ENSGALG00000039917	EXOSC1	100	84.932	Gallus_gallus
ENSSSCG00000010518	EXOSC1	89	76.440	ENSGAFG00000010265	exosc1	94	76.440	Gambusia_affinis
ENSSSCG00000010518	EXOSC1	89	79.581	ENSGACG00000018936	exosc1	98	79.581	Gasterosteus_aculeatus
ENSSSCG00000010518	EXOSC1	91	83.590	ENSGAGG00000019192	EXOSC1	100	83.590	Gopherus_agassizii
ENSSSCG00000010518	EXOSC1	91	84.615	ENSGGOG00000003099	EXOSC1	100	84.615	Gorilla_gorilla
ENSSSCG00000010518	EXOSC1	89	79.581	ENSHBUG00000017857	exosc1	98	79.581	Haplochromis_burtoni
ENSSSCG00000010518	EXOSC1	91	97.436	ENSHGLG00000016927	EXOSC1	100	97.436	Heterocephalus_glaber_female
ENSSSCG00000010518	EXOSC1	91	97.436	ENSHGLG00100012208	EXOSC1	100	97.436	Heterocephalus_glaber_male
ENSSSCG00000010518	EXOSC1	89	78.534	ENSHCOG00000019882	exosc1	98	78.534	Hippocampus_comes
ENSSSCG00000010518	EXOSC1	89	80.105	ENSIPUG00000007685	exosc1	98	80.105	Ictalurus_punctatus
ENSSSCG00000010518	EXOSC1	57	81.967	ENSSTOG00000029860	-	93	81.967	Ictidomys_tridecemlineatus
ENSSSCG00000010518	EXOSC1	91	97.949	ENSSTOG00000006615	EXOSC1	100	97.949	Ictidomys_tridecemlineatus
ENSSSCG00000010518	EXOSC1	91	97.949	ENSJJAG00000013311	Exosc1	100	97.949	Jaculus_jaculus
ENSSSCG00000010518	EXOSC1	89	78.010	ENSKMAG00000001202	exosc1	81	78.010	Kryptolebias_marmoratus
ENSSSCG00000010518	EXOSC1	89	79.058	ENSLBEG00000011448	exosc1	98	79.058	Labrus_bergylta
ENSSSCG00000010518	EXOSC1	89	57.868	ENSLOCG00000003776	exosc1	98	57.868	Lepisosteus_oculatus
ENSSSCG00000010518	EXOSC1	91	96.923	ENSLAFG00000015983	EXOSC1	100	96.923	Loxodonta_africana
ENSSSCG00000010518	EXOSC1	91	96.410	ENSMFAG00000001493	EXOSC1	100	96.410	Macaca_fascicularis
ENSSSCG00000010518	EXOSC1	96	93.659	ENSMMUG00000020028	EXOSC1	97	93.659	Macaca_mulatta
ENSSSCG00000010518	EXOSC1	91	96.410	ENSMNEG00000029816	EXOSC1	100	96.410	Macaca_nemestrina
ENSSSCG00000010518	EXOSC1	91	90.769	ENSMLEG00000027643	EXOSC1	100	90.769	Mandrillus_leucophaeus
ENSSSCG00000010518	EXOSC1	89	80.105	ENSMAMG00000012200	exosc1	98	80.105	Mastacembelus_armatus
ENSSSCG00000010518	EXOSC1	89	79.581	ENSMZEG00005007042	exosc1	98	79.581	Maylandia_zebra
ENSSSCG00000010518	EXOSC1	91	85.128	ENSMAUG00000020462	-	100	85.128	Mesocricetus_auratus
ENSSSCG00000010518	EXOSC1	96	94.146	ENSMICG00000007664	EXOSC1	97	94.146	Microcebus_murinus
ENSSSCG00000010518	EXOSC1	88	90.000	ENSMOCG00000017124	-	97	90.000	Microtus_ochrogaster
ENSSSCG00000010518	EXOSC1	91	96.410	ENSMOCG00000006004	-	100	96.410	Microtus_ochrogaster
ENSSSCG00000010518	EXOSC1	91	59.794	ENSMMOG00000021403	exosc1	99	59.794	Mola_mola
ENSSSCG00000010518	EXOSC1	91	91.327	ENSMODG00000004213	EXOSC1	100	91.327	Monodelphis_domestica
ENSSSCG00000010518	EXOSC1	86	80.435	ENSMALG00000007061	exosc1	92	80.435	Monopterus_albus
ENSSSCG00000010518	EXOSC1	91	95.897	MGP_CAROLIEiJ_G0022959	Exosc1	100	95.897	Mus_caroli
ENSSSCG00000010518	EXOSC1	91	95.385	ENSMUSG00000034321	Exosc1	100	95.385	Mus_musculus
ENSSSCG00000010518	EXOSC1	91	96.410	MGP_PahariEiJ_G0014449	Exosc1	100	96.410	Mus_pahari
ENSSSCG00000010518	EXOSC1	91	95.897	MGP_SPRETEiJ_G0023880	Exosc1	100	95.897	Mus_spretus
ENSSSCG00000010518	EXOSC1	91	98.974	ENSMPUG00000017044	EXOSC1	100	98.974	Mustela_putorius_furo
ENSSSCG00000010518	EXOSC1	91	97.436	ENSMLUG00000009228	EXOSC1	100	97.436	Myotis_lucifugus
ENSSSCG00000010518	EXOSC1	91	95.385	ENSNGAG00000022033	Exosc1	100	95.385	Nannospalax_galili
ENSSSCG00000010518	EXOSC1	89	60.209	ENSNBRG00000024007	exosc1	97	60.209	Neolamprologus_brichardi
ENSSSCG00000010518	EXOSC1	91	95.897	ENSNLEG00000013872	EXOSC1	100	95.897	Nomascus_leucogenys
ENSSSCG00000010518	EXOSC1	54	89.565	ENSMEUG00000002246	EXOSC1	100	89.565	Notamacropus_eugenii
ENSSSCG00000010518	EXOSC1	91	95.897	ENSOPRG00000005065	EXOSC1	100	95.897	Ochotona_princeps
ENSSSCG00000010518	EXOSC1	91	97.436	ENSODEG00000016709	EXOSC1	100	97.436	Octodon_degus
ENSSSCG00000010518	EXOSC1	89	79.581	ENSONIG00000017683	exosc1	98	79.581	Oreochromis_niloticus
ENSSSCG00000010518	EXOSC1	54	93.043	ENSOANG00000006563	EXOSC1	98	91.129	Ornithorhynchus_anatinus
ENSSSCG00000010518	EXOSC1	91	96.429	ENSOCUG00000011898	-	100	96.429	Oryctolagus_cuniculus
ENSSSCG00000010518	EXOSC1	91	91.282	ENSOCUG00000026461	-	100	91.282	Oryctolagus_cuniculus
ENSSSCG00000010518	EXOSC1	89	78.125	ENSORLG00000011595	exosc1	98	78.125	Oryzias_latipes
ENSSSCG00000010518	EXOSC1	89	78.125	ENSORLG00020005831	exosc1	98	78.125	Oryzias_latipes_hni
ENSSSCG00000010518	EXOSC1	89	78.125	ENSORLG00015004317	exosc1	98	78.125	Oryzias_latipes_hsok
ENSSSCG00000010518	EXOSC1	89	62.827	ENSOMEG00000013907	exosc1	98	62.827	Oryzias_melastigma
ENSSSCG00000010518	EXOSC1	91	96.923	ENSOGAG00000016259	EXOSC1	100	96.923	Otolemur_garnettii
ENSSSCG00000010518	EXOSC1	96	96.098	ENSOARG00000010136	EXOSC1	100	97.949	Ovis_aries
ENSSSCG00000010518	EXOSC1	91	90.355	ENSPPAG00000039842	EXOSC1	100	90.355	Pan_paniscus
ENSSSCG00000010518	EXOSC1	91	98.974	ENSPPRG00000023366	EXOSC1	100	98.974	Panthera_pardus
ENSSSCG00000010518	EXOSC1	91	98.974	ENSPTIG00000017701	EXOSC1	100	98.974	Panthera_tigris_altaica
ENSSSCG00000010518	EXOSC1	91	96.410	ENSPTRG00000002808	EXOSC1	100	96.410	Pan_troglodytes
ENSSSCG00000010518	EXOSC1	91	96.410	ENSPANG00000021324	EXOSC1	100	96.410	Papio_anubis
ENSSSCG00000010518	EXOSC1	89	80.628	ENSPKIG00000016037	exosc1	98	80.628	Paramormyrops_kingsleyae
ENSSSCG00000010518	EXOSC1	68	80.137	ENSPSIG00000013571	EXOSC1	98	80.328	Pelodiscus_sinensis
ENSSSCG00000010518	EXOSC1	89	67.539	ENSPMGG00000014002	exosc1	98	67.539	Periophthalmus_magnuspinnatus
ENSSSCG00000010518	EXOSC1	91	96.410	ENSPEMG00000010710	-	100	96.410	Peromyscus_maniculatus_bairdii
ENSSSCG00000010518	EXOSC1	87	71.123	ENSPMAG00000000195	exosc1	95	71.123	Petromyzon_marinus
ENSSSCG00000010518	EXOSC1	91	92.308	ENSPCIG00000002210	EXOSC1	99	92.308	Phascolarctos_cinereus
ENSSSCG00000010518	EXOSC1	89	75.916	ENSPFOG00000006755	exosc1	94	75.916	Poecilia_formosa
ENSSSCG00000010518	EXOSC1	89	75.916	ENSPLAG00000005880	exosc1	98	75.916	Poecilia_latipinna
ENSSSCG00000010518	EXOSC1	89	75.916	ENSPMEG00000015598	exosc1	94	75.916	Poecilia_mexicana
ENSSSCG00000010518	EXOSC1	89	65.969	ENSPREG00000000405	exosc1	93	65.969	Poecilia_reticulata
ENSSSCG00000010518	EXOSC1	91	95.897	ENSPPYG00000002531	EXOSC1	100	95.897	Pongo_abelii
ENSSSCG00000010518	EXOSC1	91	96.923	ENSPCAG00000009135	EXOSC1	100	96.923	Procavia_capensis
ENSSSCG00000010518	EXOSC1	91	91.282	ENSPCOG00000027539	EXOSC1	100	91.282	Propithecus_coquereli
ENSSSCG00000010518	EXOSC1	91	97.949	ENSPVAG00000003372	EXOSC1	100	97.949	Pteropus_vampyrus
ENSSSCG00000010518	EXOSC1	89	79.581	ENSPNYG00000021745	exosc1	98	79.581	Pundamilia_nyererei
ENSSSCG00000010518	EXOSC1	89	80.105	ENSPNAG00000001944	exosc1	98	80.105	Pygocentrus_nattereri
ENSSSCG00000010518	EXOSC1	91	96.410	ENSRNOG00000048708	Exosc1	100	96.410	Rattus_norvegicus
ENSSSCG00000010518	EXOSC1	91	96.410	ENSRBIG00000035618	EXOSC1	100	96.410	Rhinopithecus_bieti
ENSSSCG00000010518	EXOSC1	96	93.659	ENSRROG00000032589	EXOSC1	97	93.659	Rhinopithecus_roxellana
ENSSSCG00000010518	EXOSC1	91	97.949	ENSSBOG00000000359	EXOSC1	100	97.949	Saimiri_boliviensis_boliviensis
ENSSSCG00000010518	EXOSC1	68	94.558	ENSSHAG00000018219	EXOSC1	100	94.558	Sarcophilus_harrisii
ENSSSCG00000010518	EXOSC1	89	82.199	ENSSFOG00015009069	exosc1	98	82.199	Scleropages_formosus
ENSSSCG00000010518	EXOSC1	89	77.368	ENSSFOG00015016289	-	98	77.368	Scleropages_formosus
ENSSSCG00000010518	EXOSC1	89	80.105	ENSSMAG00000003721	exosc1	98	80.105	Scophthalmus_maximus
ENSSSCG00000010518	EXOSC1	89	80.105	ENSSDUG00000002993	exosc1	98	80.105	Seriola_dumerili
ENSSSCG00000010518	EXOSC1	89	80.105	ENSSLDG00000025181	exosc1	98	80.105	Seriola_lalandi_dorsalis
ENSSSCG00000010518	EXOSC1	91	84.103	ENSSARG00000000162	EXOSC1	100	84.103	Sorex_araneus
ENSSSCG00000010518	EXOSC1	91	81.959	ENSSPUG00000012263	EXOSC1	99	81.959	Sphenodon_punctatus
ENSSSCG00000010518	EXOSC1	89	71.204	ENSSPAG00000016792	exosc1	82	71.204	Stegastes_partitus
ENSSSCG00000010518	EXOSC1	90	80.729	ENSTGUG00000009692	EXOSC1	99	80.729	Taeniopygia_guttata
ENSSSCG00000010518	EXOSC1	88	74.074	ENSTRUG00000007706	exosc1	98	74.074	Takifugu_rubripes
ENSSSCG00000010518	EXOSC1	88	73.958	ENSTNIG00000014079	exosc1	97	73.958	Tetraodon_nigroviridis
ENSSSCG00000010518	EXOSC1	91	89.744	ENSTBEG00000006011	EXOSC1	100	89.744	Tupaia_belangeri
ENSSSCG00000010518	EXOSC1	86	98.370	ENSTTRG00000009887	EXOSC1	100	98.370	Tursiops_truncatus
ENSSSCG00000010518	EXOSC1	91	82.051	ENSUAMG00000010266	EXOSC1	100	82.051	Ursus_americanus
ENSSSCG00000010518	EXOSC1	91	82.051	ENSUMAG00000022002	EXOSC1	100	82.051	Ursus_maritimus
ENSSSCG00000010518	EXOSC1	92	98.477	ENSVVUG00000023192	EXOSC1	64	98.477	Vulpes_vulpes
ENSSSCG00000010518	EXOSC1	90	79.167	ENSXETG00000003434	exosc1	99	79.167	Xenopus_tropicalis
ENSSSCG00000010518	EXOSC1	56	85.000	ENSXCOG00000014499	exosc1	92	85.000	Xiphophorus_couchianus
ENSSSCG00000010518	EXOSC1	89	66.492	ENSXMAG00000023382	exosc1	93	66.492	Xiphophorus_maculatus