EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000010653 (Gene tree)
Gene ID: 100151860
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 53359 bases
Position: chr14:125262109-125315467
Accession: 100151860
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000048348	TruB_N	PF01509.18	1.2e-48	1	1
ENSSSCP00000011350	TruB_N	PF01509.18	1.2e-48	1	1
ENSSSCP00000049839	TruB_N	PF01509.18	1.2e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000041459	TRUB1-203	1014	XM_021073386	ENSSSCP00000049839	304 (aa)	XP_020929045	A0A287B0T9
ENSSSCT00000011652	TRUB1-202	1152	XM_001929396	ENSSSCP00000011350	350 (aa)	XP_001929431	F1S4U4
ENSSSCT00000066250	TRUB1-201	1131	-	ENSSSCP00000048348	343 (aa)	-	A0A287AWV0

Gene Model

Click here to download ENSSSCG00000010653's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000010653's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000010653	TRUB1	59	32.692	ENSSSCG00000005645	TRUB2	70	32.692

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000010653	TRUB1	99	87.679	ENSG00000165832	TRUB1	99	87.679	Homo_sapiens
ENSSSCG00000010653	TRUB1	71	68.163	ENSAPOG00000020565	trub1	91	67.331	Acanthochromis_polyacanthus
ENSSSCG00000010653	TRUB1	96	89.349	ENSAMEG00000014931	TRUB1	99	88.889	Ailuropoda_melanoleuca
ENSSSCG00000010653	TRUB1	81	57.042	ENSACIG00000003060	trub1	94	57.042	Amphilophus_citrinellus
ENSSSCG00000010653	TRUB1	72	68.699	ENSAOCG00000017188	trub1	89	67.886	Amphiprion_ocellaris
ENSSSCG00000010653	TRUB1	72	67.480	ENSAPEG00000015209	trub1	89	67.480	Amphiprion_percula
ENSSSCG00000010653	TRUB1	70	68.880	ENSATEG00000023291	trub1	88	67.742	Anabas_testudineus
ENSSSCG00000010653	TRUB1	79	75.185	ENSAPLG00000006808	TRUB1	97	75.368	Anas_platyrhynchos
ENSSSCG00000010653	TRUB1	78	70.522	ENSACAG00000009282	TRUB1	97	70.522	Anolis_carolinensis
ENSSSCG00000010653	TRUB1	95	89.521	ENSANAG00000022870	TRUB1	99	88.539	Aotus_nancymaae
ENSSSCG00000010653	TRUB1	73	67.063	ENSACLG00000000823	trub1	91	67.063	Astatotilapia_calliptera
ENSSSCG00000010653	TRUB1	76	66.284	ENSAMXG00000015845	trub1	87	66.284	Astyanax_mexicanus
ENSSSCG00000010653	TRUB1	98	89.504	ENSBTAG00000012955	TRUB1	100	88.636	Bos_taurus
ENSSSCG00000010653	TRUB1	99	88.571	ENSCJAG00000047815	TRUB1	99	88.571	Callithrix_jacchus
ENSSSCG00000010653	TRUB1	100	88.286	ENSCAFG00000011688	TRUB1	100	88.286	Canis_familiaris
ENSSSCG00000010653	TRUB1	100	88.571	ENSCAFG00020013237	TRUB1	100	88.571	Canis_lupus_dingo
ENSSSCG00000010653	TRUB1	98	89.213	ENSCHIG00000020884	TRUB1	100	88.604	Capra_hircus
ENSSSCG00000010653	TRUB1	99	86.286	ENSTSYG00000000446	TRUB1	99	84.857	Carlito_syrichta
ENSSSCG00000010653	TRUB1	72	81.423	ENSCAPG00000017088	TRUB1	99	81.423	Cavia_aperea
ENSSSCG00000010653	TRUB1	71	81.633	ENSCPOG00000040236	-	100	81.633	Cavia_porcellus
ENSSSCG00000010653	TRUB1	72	76.613	ENSCPOG00000030129	-	86	75.403	Cavia_porcellus
ENSSSCG00000010653	TRUB1	96	88.690	ENSCCAG00000028842	TRUB1	99	87.714	Cebus_capucinus
ENSSSCG00000010653	TRUB1	99	87.679	ENSCATG00000033431	TRUB1	99	87.679	Cercocebus_atys
ENSSSCG00000010653	TRUB1	71	84.082	ENSCLAG00000008664	TRUB1	100	84.082	Chinchilla_lanigera
ENSSSCG00000010653	TRUB1	99	87.966	ENSCSAG00000004891	TRUB1	99	87.966	Chlorocebus_sabaeus
ENSSSCG00000010653	TRUB1	100	73.714	ENSCHOG00000011931	TRUB1	100	73.714	Choloepus_hoffmanni
ENSSSCG00000010653	TRUB1	79	78.889	ENSCPBG00000003051	TRUB1	94	79.044	Chrysemys_picta_bellii
ENSSSCG00000010653	TRUB1	99	87.966	ENSCANG00000029445	TRUB1	99	87.966	Colobus_angolensis_palliatus
ENSSSCG00000010653	TRUB1	73	84.706	ENSCGRG00001016772	-	90	75.839	Cricetulus_griseus_chok1gshd
ENSSSCG00000010653	TRUB1	80	77.936	ENSCGRG00001010322	-	80	77.027	Cricetulus_griseus_chok1gshd
ENSSSCG00000010653	TRUB1	80	86.121	ENSCGRG00000010806	Trub1	91	84.564	Cricetulus_griseus_crigri
ENSSSCG00000010653	TRUB1	75	62.500	ENSCSEG00000011261	trub1	83	62.500	Cynoglossus_semilaevis
ENSSSCG00000010653	TRUB1	73	66.800	ENSCVAG00000008791	trub1	77	66.800	Cyprinodon_variegatus
ENSSSCG00000010653	TRUB1	77	66.160	ENSDARG00000053805	trub1	90	66.160	Danio_rerio
ENSSSCG00000010653	TRUB1	97	82.698	ENSDNOG00000001069	TRUB1	100	81.534	Dasypus_novemcinctus
ENSSSCG00000010653	TRUB1	100	84.286	ENSDORG00000010431	Trub1	100	83.429	Dipodomys_ordii
ENSSSCG00000010653	TRUB1	81	75.980	ENSETEG00000009183	TRUB1	81	76.961	Echinops_telfairi
ENSSSCG00000010653	TRUB1	96	89.318	ENSEASG00005014739	TRUB1	100	88.857	Equus_asinus_asinus
ENSSSCG00000010653	TRUB1	96	89.318	ENSECAG00000007177	TRUB1	100	88.857	Equus_caballus
ENSSSCG00000010653	TRUB1	99	72.753	ENSEEUG00000013993	TRUB1	99	72.472	Erinaceus_europaeus
ENSSSCG00000010653	TRUB1	71	69.388	ENSELUG00000000502	trub1	86	69.388	Esox_lucius
ENSSSCG00000010653	TRUB1	96	89.851	ENSFCAG00000031927	TRUB1	99	89.368	Felis_catus
ENSSSCG00000010653	TRUB1	69	75.319	ENSFALG00000002232	TRUB1	92	74.167	Ficedula_albicollis
ENSSSCG00000010653	TRUB1	71	83.673	ENSFDAG00000008140	TRUB1	100	83.673	Fukomys_damarensis
ENSSSCG00000010653	TRUB1	71	65.984	ENSFHEG00000004016	trub1	89	63.320	Fundulus_heteroclitus
ENSSSCG00000010653	TRUB1	79	73.333	ENSGALG00000009091	TRUB1	96	73.529	Gallus_gallus
ENSSSCG00000010653	TRUB1	69	65.272	ENSGAFG00000009193	trub1	84	65.272	Gambusia_affinis
ENSSSCG00000010653	TRUB1	57	67.179	ENSGACG00000015387	trub1	96	67.179	Gasterosteus_aculeatus
ENSSSCG00000010653	TRUB1	90	72.313	ENSGAGG00000009758	TRUB1	81	77.465	Gopherus_agassizii
ENSSSCG00000010653	TRUB1	99	87.966	ENSGGOG00000004583	TRUB1	99	87.966	Gorilla_gorilla
ENSSSCG00000010653	TRUB1	78	64.179	ENSHBUG00000016787	trub1	95	64.528	Haplochromis_burtoni
ENSSSCG00000010653	TRUB1	100	83.714	ENSHGLG00000015314	TRUB1	100	83.714	Heterocephalus_glaber_female
ENSSSCG00000010653	TRUB1	71	82.449	ENSHGLG00100009183	TRUB1	100	82.449	Heterocephalus_glaber_male
ENSSSCG00000010653	TRUB1	71	66.531	ENSHCOG00000017877	trub1	89	66.531	Hippocampus_comes
ENSSSCG00000010653	TRUB1	78	65.543	ENSIPUG00000017559	trub1	94	65.543	Ictalurus_punctatus
ENSSSCG00000010653	TRUB1	86	90.066	ENSSTOG00000003641	TRUB1	100	84.000	Ictidomys_tridecemlineatus
ENSSSCG00000010653	TRUB1	100	80.286	ENSJJAG00000011800	Trub1	100	79.143	Jaculus_jaculus
ENSSSCG00000010653	TRUB1	74	65.370	ENSKMAG00000006232	trub1	92	65.370	Kryptolebias_marmoratus
ENSSSCG00000010653	TRUB1	78	63.910	ENSLBEG00000026722	trub1	92	63.910	Labrus_bergylta
ENSSSCG00000010653	TRUB1	80	71.377	ENSLACG00000014885	TRUB1	92	71.377	Latimeria_chalumnae
ENSSSCG00000010653	TRUB1	80	68.864	ENSLOCG00000012979	trub1	93	68.864	Lepisosteus_oculatus
ENSSSCG00000010653	TRUB1	99	77.031	ENSLAFG00000015452	TRUB1	99	77.871	Loxodonta_africana
ENSSSCG00000010653	TRUB1	99	87.679	ENSMFAG00000031767	TRUB1	99	87.679	Macaca_fascicularis
ENSSSCG00000010653	TRUB1	99	87.966	ENSMMUG00000001902	TRUB1	99	87.966	Macaca_mulatta
ENSSSCG00000010653	TRUB1	99	83.954	ENSMNEG00000044646	TRUB1	99	83.954	Macaca_nemestrina
ENSSSCG00000010653	TRUB1	99	87.679	ENSMLEG00000042655	TRUB1	99	87.679	Mandrillus_leucophaeus
ENSSSCG00000010653	TRUB1	73	67.063	ENSMZEG00005024095	trub1	91	67.063	Maylandia_zebra
ENSSSCG00000010653	TRUB1	79	73.333	ENSMGAG00000011135	TRUB1	93	73.333	Meleagris_gallopavo
ENSSSCG00000010653	TRUB1	85	82.274	ENSMAUG00000011101	Trub1	89	82.392	Mesocricetus_auratus
ENSSSCG00000010653	TRUB1	100	89.429	ENSMICG00000016324	TRUB1	100	89.429	Microcebus_murinus
ENSSSCG00000010653	TRUB1	100	76.286	ENSMOCG00000017759	Trub1	100	77.143	Microtus_ochrogaster
ENSSSCG00000010653	TRUB1	82	81.119	ENSMODG00000009676	TRUB1	81	79.054	Monodelphis_domestica
ENSSSCG00000010653	TRUB1	100	78.000	MGP_CAROLIEiJ_G0023100	Trub1	100	78.000	Mus_caroli
ENSSSCG00000010653	TRUB1	100	76.857	ENSMUSG00000025086	Trub1	100	76.857	Mus_musculus
ENSSSCG00000010653	TRUB1	100	78.286	MGP_PahariEiJ_G0014588	Trub1	100	78.286	Mus_pahari
ENSSSCG00000010653	TRUB1	100	77.143	MGP_SPRETEiJ_G0024021	Trub1	100	77.143	Mus_spretus
ENSSSCG00000010653	TRUB1	96	89.881	ENSMPUG00000003556	TRUB1	99	89.398	Mustela_putorius_furo
ENSSSCG00000010653	TRUB1	95	82.635	ENSMLUG00000017686	TRUB1	99	81.429	Myotis_lucifugus
ENSSSCG00000010653	TRUB1	100	82.286	ENSNGAG00000018682	Trub1	100	82.286	Nannospalax_galili
ENSSSCG00000010653	TRUB1	72	67.886	ENSNBRG00000023393	trub1	88	67.886	Neolamprologus_brichardi
ENSSSCG00000010653	TRUB1	96	88.095	ENSNLEG00000016345	TRUB1	99	87.393	Nomascus_leucogenys
ENSSSCG00000010653	TRUB1	59	88.557	ENSMEUG00000006603	TRUB1	78	85.308	Notamacropus_eugenii
ENSSSCG00000010653	TRUB1	86	82.450	ENSOPRG00000009371	TRUB1	88	82.450	Ochotona_princeps
ENSSSCG00000010653	TRUB1	99	81.375	ENSODEG00000010854	TRUB1	99	81.375	Octodon_degus
ENSSSCG00000010653	TRUB1	76	66.023	ENSONIG00000007249	trub1	94	66.023	Oreochromis_niloticus
ENSSSCG00000010653	TRUB1	79	79.630	ENSOANG00000001556	TRUB1	90	79.779	Ornithorhynchus_anatinus
ENSSSCG00000010653	TRUB1	100	82.000	ENSOCUG00000009456	TRUB1	100	82.000	Oryctolagus_cuniculus
ENSSSCG00000010653	TRUB1	70	69.295	ENSORLG00000029719	trub1	86	69.295	Oryzias_latipes
ENSSSCG00000010653	TRUB1	70	68.880	ENSORLG00020016767	trub1	85	68.880	Oryzias_latipes_hni
ENSSSCG00000010653	TRUB1	70	68.880	ENSORLG00015014728	trub1	86	68.880	Oryzias_latipes_hsok
ENSSSCG00000010653	TRUB1	76	65.385	ENSOMEG00000014556	trub1	89	66.797	Oryzias_melastigma
ENSSSCG00000010653	TRUB1	99	89.971	ENSOGAG00000015895	TRUB1	99	89.971	Otolemur_garnettii
ENSSSCG00000010653	TRUB1	84	89.404	ENSOARG00000015591	TRUB1	100	85.154	Ovis_aries
ENSSSCG00000010653	TRUB1	99	87.966	ENSPPAG00000043645	TRUB1	99	87.966	Pan_paniscus
ENSSSCG00000010653	TRUB1	96	89.254	ENSPPRG00000007096	TRUB1	99	88.793	Panthera_pardus
ENSSSCG00000010653	TRUB1	96	89.552	ENSPTIG00000006378	TRUB1	99	89.080	Panthera_tigris_altaica
ENSSSCG00000010653	TRUB1	99	87.966	ENSPTRG00000002964	TRUB1	99	87.966	Pan_troglodytes
ENSSSCG00000010653	TRUB1	99	87.679	ENSPANG00000020712	TRUB1	99	87.679	Papio_anubis
ENSSSCG00000010653	TRUB1	50	68.208	ENSPKIG00000003852	trub1	74	68.208	Paramormyrops_kingsleyae
ENSSSCG00000010653	TRUB1	78	78.571	ENSPSIG00000012877	TRUB1	94	77.007	Pelodiscus_sinensis
ENSSSCG00000010653	TRUB1	71	65.714	ENSPMGG00000000075	trub1	88	65.714	Periophthalmus_magnuspinnatus
ENSSSCG00000010653	TRUB1	86	81.395	ENSPEMG00000011156	Trub1	89	81.395	Peromyscus_maniculatus_bairdii
ENSSSCG00000010653	TRUB1	82	81.119	ENSPCIG00000009729	TRUB1	79	79.795	Phascolarctos_cinereus
ENSSSCG00000010653	TRUB1	73	65.476	ENSPFOG00000009950	trub1	91	65.476	Poecilia_formosa
ENSSSCG00000010653	TRUB1	73	65.476	ENSPLAG00000013855	trub1	87	65.476	Poecilia_latipinna
ENSSSCG00000010653	TRUB1	73	65.476	ENSPMEG00000009064	trub1	90	65.476	Poecilia_mexicana
ENSSSCG00000010653	TRUB1	73	66.270	ENSPREG00000003343	trub1	90	66.270	Poecilia_reticulata
ENSSSCG00000010653	TRUB1	96	88.393	ENSPPYG00000002676	TRUB1	99	87.679	Pongo_abelii
ENSSSCG00000010653	TRUB1	97	75.150	ENSPCAG00000008427	TRUB1	99	72.443	Procavia_capensis
ENSSSCG00000010653	TRUB1	100	84.000	ENSPCOG00000024360	TRUB1	100	84.000	Propithecus_coquereli
ENSSSCG00000010653	TRUB1	77	87.879	ENSPVAG00000007575	TRUB1	100	87.879	Pteropus_vampyrus
ENSSSCG00000010653	TRUB1	73	67.063	ENSPNYG00000018614	trub1	91	67.063	Pundamilia_nyererei
ENSSSCG00000010653	TRUB1	79	57.721	ENSPNAG00000006881	trub1	88	57.721	Pygocentrus_nattereri
ENSSSCG00000010653	TRUB1	100	77.714	ENSRNOG00000017321	Trub1	100	77.714	Rattus_norvegicus
ENSSSCG00000010653	TRUB1	99	78.510	ENSRBIG00000033423	TRUB1	99	78.510	Rhinopithecus_bieti
ENSSSCG00000010653	TRUB1	99	87.393	ENSRROG00000033902	TRUB1	99	87.393	Rhinopithecus_roxellana
ENSSSCG00000010653	TRUB1	96	88.988	ENSSBOG00000024237	TRUB1	99	88.000	Saimiri_boliviensis_boliviensis
ENSSSCG00000010653	TRUB1	73	78.906	ENSSHAG00000009346	TRUB1	86	78.906	Sarcophilus_harrisii
ENSSSCG00000010653	TRUB1	71	70.248	ENSSFOG00015022124	trub1	83	70.248	Scleropages_formosus
ENSSSCG00000010653	TRUB1	72	67.886	ENSSMAG00000001020	trub1	88	67.886	Scophthalmus_maximus
ENSSSCG00000010653	TRUB1	70	68.750	ENSSDUG00000016414	trub1	88	68.699	Seriola_dumerili
ENSSSCG00000010653	TRUB1	70	69.167	ENSSLDG00000015486	trub1	88	69.106	Seriola_lalandi_dorsalis
ENSSSCG00000010653	TRUB1	86	73.898	ENSSPUG00000001642	TRUB1	93	78.309	Sphenodon_punctatus
ENSSSCG00000010653	TRUB1	77	66.540	ENSSPAG00000001217	trub1	94	66.540	Stegastes_partitus
ENSSSCG00000010653	TRUB1	77	75.758	ENSTGUG00000010971	TRUB1	97	74.632	Taeniopygia_guttata
ENSSSCG00000010653	TRUB1	72	75.889	ENSTBEG00000002880	TRUB1	99	75.889	Tupaia_belangeri
ENSSSCG00000010653	TRUB1	73	86.454	ENSTTRG00000005767	TRUB1	100	90.152	Tursiops_truncatus
ENSSSCG00000010653	TRUB1	96	91.071	ENSUAMG00000024876	TRUB1	99	90.258	Ursus_americanus
ENSSSCG00000010653	TRUB1	84	92.517	ENSUMAG00000002411	TRUB1	99	86.819	Ursus_maritimus
ENSSSCG00000010653	TRUB1	100	89.714	ENSVPAG00000005507	TRUB1	100	89.714	Vicugna_pacos
ENSSSCG00000010653	TRUB1	100	87.143	ENSVVUG00000010085	TRUB1	84	88.000	Vulpes_vulpes
ENSSSCG00000010653	TRUB1	78	65.672	ENSXETG00000023828	trub1	98	65.441	Xenopus_tropicalis
ENSSSCG00000010653	TRUB1	69	65.966	ENSXCOG00000017847	trub1	84	65.966	Xiphophorus_couchianus
ENSSSCG00000010653	TRUB1	73	64.683	ENSXMAG00000014701	trub1	90	64.683	Xiphophorus_maculatus