EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000010877 (Gene tree)
Gene ID: 102165761
Gene Symbol: HNRNPU
Alias: C1orf199|FLJ30202|FLJ37978|HNRNPU-AS1|HNRPU|NCRNA00201|SAF-A|hnRNPU
Full Name: heterogeneous nuclear ribonucleoprotein U
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 20254 bases
Position: chr10:17476877-17497130
Accession: 5048
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000011596	SAP	PF02037.27	4.5e-10	1	1
ENSSSCP00000043124	SAP	PF02037.27	4.5e-10	1	1
ENSSSCP00000035493	SAP	PF02037.27	4.5e-10	1	1
ENSSSCP00000033409	SAP	PF02037.27	4.5e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000011900	HNRNPU-202	4818	-	ENSSSCP00000011596	804 (aa)	-	F1S8L9
ENSSSCT00000037347	HNRNPU-201	6455	-	ENSSSCP00000043124	804 (aa)	-	F1S8L9
ENSSSCT00000046854	HNRNPU-205	2645	-	ENSSSCP00000031714	692 (aa)	-	A0A286ZJR3
ENSSSCT00000052803	HNRNPU-204	6268	-	ENSSSCP00000033409	806 (aa)	-	A0A286ZP67
ENSSSCT00000059575	HNRNPU-203	5520	-	ENSSSCP00000035493	825 (aa)	-	A0A286ZVL0

Gene Model

Click here to download ENSSSCG00000010877's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000010877's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000010877	HNRNPU	56	51.852	ENSSSCG00000028542	-	60	52.620
ENSSSCG00000010877	HNRNPU	81	48.471	ENSSSCG00000030049	-	61	51.786

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000010877	HNRNPU	100	98.788	ENSG00000153187	HNRNPU	100	100.000	Homo_sapiens
ENSSSCG00000010877	HNRNPU	79	77.083	ENSAPOG00000017400	hnrnpub	87	77.083	Acanthochromis_polyacanthus
ENSSSCG00000010877	HNRNPU	100	95.981	ENSAMEG00000009145	HNRNPU	100	95.981	Ailuropoda_melanoleuca
ENSSSCG00000010877	HNRNPU	83	59.868	ENSACIG00000012138	hnrnpub	87	80.952	Amphilophus_citrinellus
ENSSSCG00000010877	HNRNPU	79	75.000	ENSAOCG00000015843	hnrnpub	87	75.000	Amphiprion_ocellaris
ENSSSCG00000010877	HNRNPU	79	75.000	ENSAPEG00000014679	hnrnpub	87	75.000	Amphiprion_percula
ENSSSCG00000010877	HNRNPU	73	72.549	ENSATEG00000016178	hnrnpub	81	60.575	Anabas_testudineus
ENSSSCG00000010877	HNRNPU	80	84.024	ENSACAG00000004511	HNRNPU	72	89.369	Anolis_carolinensis
ENSSSCG00000010877	HNRNPU	100	98.883	ENSANAG00000033895	-	100	98.883	Aotus_nancymaae
ENSSSCG00000010877	HNRNPU	78	83.333	ENSACLG00000008165	hnrnpub	85	83.333	Astatotilapia_calliptera
ENSSSCG00000010877	HNRNPU	100	99.273	ENSBTAG00000007606	HNRNPU	100	99.273	Bos_taurus
ENSSSCG00000010877	HNRNPU	100	98.667	ENSCJAG00000016914	HNRNPU	100	98.667	Callithrix_jacchus
ENSSSCG00000010877	HNRNPU	100	98.759	ENSCAFG00020000918	HNRNPU	100	98.759	Canis_lupus_dingo
ENSSSCG00000010877	HNRNPU	100	99.256	ENSCHIG00000004900	HNRNPU	100	99.256	Capra_hircus
ENSSSCG00000010877	HNRNPU	100	97.939	ENSCPOG00000011887	HNRNPU	100	97.939	Cavia_porcellus
ENSSSCG00000010877	HNRNPU	100	98.909	ENSCCAG00000037859	-	100	98.909	Cebus_capucinus
ENSSSCG00000010877	HNRNPU	100	98.667	ENSCATG00000035273	HNRNPU	100	98.667	Cercocebus_atys
ENSSSCG00000010877	HNRNPU	100	98.182	ENSCLAG00000007100	HNRNPU	100	98.182	Chinchilla_lanigera
ENSSSCG00000010877	HNRNPU	100	98.635	ENSCSAG00000009219	HNRNPU	100	98.635	Chlorocebus_sabaeus
ENSSSCG00000010877	HNRNPU	81	100.000	ENSCHOG00000001387	HNRNPU	79	100.000	Choloepus_hoffmanni
ENSSSCG00000010877	HNRNPU	100	80.142	ENSCPBG00000009415	HNRNPU	98	81.196	Chrysemys_picta_bellii
ENSSSCG00000010877	HNRNPU	100	95.588	ENSCANG00000022780	HNRNPU	100	95.588	Colobus_angolensis_palliatus
ENSSSCG00000010877	HNRNPU	100	96.030	ENSCGRG00001020525	Hnrnpu	100	96.030	Cricetulus_griseus_chok1gshd
ENSSSCG00000010877	HNRNPU	80	67.213	ENSCSEG00000010804	hnrnpub	91	61.982	Cynoglossus_semilaevis
ENSSSCG00000010877	HNRNPU	81	71.429	ENSCVAG00000004280	hnrnpub	85	71.429	Cyprinodon_variegatus
ENSSSCG00000010877	HNRNPU	81	59.869	ENSDARG00000015206	hnrnpua	90	59.164	Danio_rerio
ENSSSCG00000010877	HNRNPU	79	85.714	ENSDARG00000004735	hnrnpub	90	59.459	Danio_rerio
ENSSSCG00000010877	HNRNPU	80	100.000	ENSDNOG00000000215	HNRNPU	88	100.000	Dasypus_novemcinctus
ENSSSCG00000010877	HNRNPU	100	92.184	ENSDORG00000015491	Hnrnpu	100	91.811	Dipodomys_ordii
ENSSSCG00000010877	HNRNPU	100	93.797	ENSETEG00000014565	HNRNPU	100	93.176	Echinops_telfairi
ENSSSCG00000010877	HNRNPU	100	98.387	ENSEASG00005003017	HNRNPU	100	98.387	Equus_asinus_asinus
ENSSSCG00000010877	HNRNPU	100	98.139	ENSECAG00000007955	HNRNPU	100	98.139	Equus_caballus
ENSSSCG00000010877	HNRNPU	70	63.130	ENSELUG00000010733	hnrnpub	68	62.437	Esox_lucius
ENSSSCG00000010877	HNRNPU	99	49.816	ENSELUG00000011966	hnrnpua	67	72.482	Esox_lucius
ENSSSCG00000010877	HNRNPU	100	98.759	ENSFCAG00000002156	HNRNPU	99	98.759	Felis_catus
ENSSSCG00000010877	HNRNPU	90	98.822	ENSFDAG00000006026	HNRNPU	100	98.822	Fukomys_damarensis
ENSSSCG00000010877	HNRNPU	80	69.643	ENSFHEG00000022639	hnrnpub	88	66.667	Fundulus_heteroclitus
ENSSSCG00000010877	HNRNPU	74	58.466	ENSGMOG00000001755	hnrnpub	77	60.791	Gadus_morhua
ENSSSCG00000010877	HNRNPU	100	78.706	ENSGALG00000010671	HNRNPU	99	78.890	Gallus_gallus
ENSSSCG00000010877	HNRNPU	62	78.261	ENSGAFG00000009369	hnrnpub	87	59.459	Gambusia_affinis
ENSSSCG00000010877	HNRNPU	77	59.225	ENSGACG00000004679	hnrnpub	73	61.462	Gasterosteus_aculeatus
ENSSSCG00000010877	HNRNPU	100	98.303	ENSGGOG00000004061	HNRNPU	100	98.303	Gorilla_gorilla
ENSSSCG00000010877	HNRNPU	80	83.333	ENSHBUG00000012290	hnrnpub	85	83.333	Haplochromis_burtoni
ENSSSCG00000010877	HNRNPU	100	97.767	ENSHGLG00000010594	-	100	97.767	Heterocephalus_glaber_female
ENSSSCG00000010877	HNRNPU	82	99.160	ENSHGLG00100015093	HNRNPU	100	99.160	Heterocephalus_glaber_male
ENSSSCG00000010877	HNRNPU	77	83.333	ENSHCOG00000020091	hnrnpub	83	79.545	Hippocampus_comes
ENSSSCG00000010877	HNRNPU	78	78.261	ENSIPUG00000007749	hnrnpu	92	72.549	Ictalurus_punctatus
ENSSSCG00000010877	HNRNPU	100	96.614	ENSJJAG00000011371	Hnrnpu	100	96.614	Jaculus_jaculus
ENSSSCG00000010877	HNRNPU	81	64.062	ENSKMAG00000004532	hnrnpub	88	59.155	Kryptolebias_marmoratus
ENSSSCG00000010877	HNRNPU	82	58.667	ENSLBEG00000022520	hnrnpub	87	61.194	Labrus_bergylta
ENSSSCG00000010877	HNRNPU	99	62.531	ENSLACG00000017463	HNRNPU	99	62.639	Latimeria_chalumnae
ENSSSCG00000010877	HNRNPU	82	64.275	ENSLOCG00000016652	hnrnpua	75	67.585	Lepisosteus_oculatus
ENSSSCG00000010877	HNRNPU	100	97.939	ENSLAFG00000021377	HNRNPU	100	97.939	Loxodonta_africana
ENSSSCG00000010877	HNRNPU	100	98.667	ENSMFAG00000037308	HNRNPU	100	98.667	Macaca_fascicularis
ENSSSCG00000010877	HNRNPU	100	98.635	ENSMMUG00000021098	HNRNPU	100	98.635	Macaca_mulatta
ENSSSCG00000010877	HNRNPU	100	98.667	ENSMNEG00000043645	HNRNPU	100	98.667	Macaca_nemestrina
ENSSSCG00000010877	HNRNPU	79	73.077	ENSMAMG00000007196	hnrnpub	86	73.077	Mastacembelus_armatus
ENSSSCG00000010877	HNRNPU	78	83.333	ENSMZEG00005003185	hnrnpub	85	83.333	Maylandia_zebra
ENSSSCG00000010877	HNRNPU	100	96.030	ENSMAUG00000008842	Hnrnpu	100	96.030	Mesocricetus_auratus
ENSSSCG00000010877	HNRNPU	100	98.788	ENSMICG00000004616	HNRNPU	100	98.788	Microcebus_murinus
ENSSSCG00000010877	HNRNPU	100	95.906	ENSMOCG00000015623	Hnrnpu	100	95.906	Microtus_ochrogaster
ENSSSCG00000010877	HNRNPU	100	91.176	ENSMODG00000006515	HNRNPU	100	93.176	Monodelphis_domestica
ENSSSCG00000010877	HNRNPU	79	70.588	ENSMALG00000018243	hnrnpub	84	61.318	Monopterus_albus
ENSSSCG00000010877	HNRNPU	100	96.283	MGP_CAROLIEiJ_G0014962	Hnrnpu	100	96.283	Mus_caroli
ENSSSCG00000010877	HNRNPU	100	96.406	ENSMUSG00000039630	Hnrnpu	100	96.406	Mus_musculus
ENSSSCG00000010877	HNRNPU	100	94.926	MGP_PahariEiJ_G0028193	Hnrnpu	100	94.678	Mus_pahari
ENSSSCG00000010877	HNRNPU	100	96.406	MGP_SPRETEiJ_G0015761	Hnrnpu	100	96.406	Mus_spretus
ENSSSCG00000010877	HNRNPU	100	90.099	ENSMLUG00000000475	HNRNPU	74	97.143	Myotis_lucifugus
ENSSSCG00000010877	HNRNPU	100	96.774	ENSNGAG00000019075	Hnrnpu	100	96.774	Nannospalax_galili
ENSSSCG00000010877	HNRNPU	78	83.333	ENSNBRG00000017855	hnrnpub	85	83.333	Neolamprologus_brichardi
ENSSSCG00000010877	HNRNPU	99	88.164	ENSMEUG00000000541	HNRNPU	100	90.217	Notamacropus_eugenii
ENSSSCG00000010877	HNRNPU	70	98.058	ENSODEG00000014458	-	100	98.058	Octodon_degus
ENSSSCG00000010877	HNRNPU	80	83.333	ENSONIG00000001260	hnrnpub	88	83.333	Oreochromis_niloticus
ENSSSCG00000010877	HNRNPU	98	98.886	ENSOCUG00000014469	HNRNPU	93	98.886	Oryctolagus_cuniculus
ENSSSCG00000010877	HNRNPU	79	78.261	ENSORLG00000016114	hnrnpub	78	56.894	Oryzias_latipes
ENSSSCG00000010877	HNRNPU	79	78.261	ENSORLG00020005363	hnrnpub	86	83.333	Oryzias_latipes_hni
ENSSSCG00000010877	HNRNPU	79	78.261	ENSORLG00015001190	hnrnpub	86	83.333	Oryzias_latipes_hsok
ENSSSCG00000010877	HNRNPU	79	78.261	ENSOMEG00000014951	hnrnpub	86	83.333	Oryzias_melastigma
ENSSSCG00000010877	HNRNPU	100	98.883	ENSOGAG00000014024	HNRNPU	100	98.883	Otolemur_garnettii
ENSSSCG00000010877	HNRNPU	82	100.000	ENSOARG00000004985	HNRNPU	90	99.161	Ovis_aries
ENSSSCG00000010877	HNRNPU	100	98.788	ENSPPAG00000038652	HNRNPU	100	98.788	Pan_paniscus
ENSSSCG00000010877	HNRNPU	100	98.788	ENSPPRG00000002662	HNRNPU	100	98.788	Panthera_pardus
ENSSSCG00000010877	HNRNPU	100	98.788	ENSPTRG00000002182	HNRNPU	100	98.788	Pan_troglodytes
ENSSSCG00000010877	HNRNPU	100	98.635	ENSPANG00000011643	HNRNPU	100	98.635	Papio_anubis
ENSSSCG00000010877	HNRNPU	83	65.446	ENSPKIG00000006885	hnrnpua	78	66.400	Paramormyrops_kingsleyae
ENSSSCG00000010877	HNRNPU	84	66.297	ENSPKIG00000022332	hnrnpub	85	71.698	Paramormyrops_kingsleyae
ENSSSCG00000010877	HNRNPU	100	95.107	ENSPCIG00000008657	HNRNPU	100	95.107	Phascolarctos_cinereus
ENSSSCG00000010877	HNRNPU	64	64.606	ENSPFOG00000002908	hnrnpub	89	60.811	Poecilia_formosa
ENSSSCG00000010877	HNRNPU	81	64.062	ENSPLAG00000004160	hnrnpub	89	60.811	Poecilia_latipinna
ENSSSCG00000010877	HNRNPU	100	94.417	ENSPCOG00000003883	-	100	94.417	Propithecus_coquereli
ENSSSCG00000010877	HNRNPU	100	98.909	ENSPCOG00000018655	-	100	98.909	Propithecus_coquereli
ENSSSCG00000010877	HNRNPU	100	98.545	ENSPVAG00000002581	HNRNPU	100	98.545	Pteropus_vampyrus
ENSSSCG00000010877	HNRNPU	78	83.333	ENSPNYG00000021642	hnrnpub	85	83.333	Pundamilia_nyererei
ENSSSCG00000010877	HNRNPU	99	56.381	ENSPNAG00000001055	hnrnpub	79	64.038	Pygocentrus_nattereri
ENSSSCG00000010877	HNRNPU	100	96.030	ENSRNOG00000033790	Hnrnpu	100	96.030	Rattus_norvegicus
ENSSSCG00000010877	HNRNPU	100	96.774	ENSRBIG00000031519	HNRNPU	100	96.774	Rhinopithecus_bieti
ENSSSCG00000010877	HNRNPU	100	98.387	ENSRROG00000041642	HNRNPU	100	98.387	Rhinopithecus_roxellana
ENSSSCG00000010877	HNRNPU	94	59.819	ENSSFOG00015019004	hnrnpu	77	67.308	Scleropages_formosus
ENSSSCG00000010877	HNRNPU	99	57.310	ENSSFOG00015001124	hnrnpub	86	64.012	Scleropages_formosus
ENSSSCG00000010877	HNRNPU	73	70.588	ENSSMAG00000003607	hnrnpub	86	57.975	Scophthalmus_maximus
ENSSSCG00000010877	HNRNPU	79	70.588	ENSSDUG00000005912	hnrnpub	85	70.588	Seriola_dumerili
ENSSSCG00000010877	HNRNPU	79	70.588	ENSSLDG00000004899	hnrnpub	88	56.138	Seriola_lalandi_dorsalis
ENSSSCG00000010877	HNRNPU	100	79.401	ENSSPUG00000011393	HNRNPU	100	79.401	Sphenodon_punctatus
ENSSSCG00000010877	HNRNPU	73	78.261	ENSSPAG00000011853	hnrnpub	80	58.359	Stegastes_partitus
ENSSSCG00000010877	HNRNPU	84	57.589	ENSTRUG00000007759	hnrnpub	85	64.706	Takifugu_rubripes
ENSSSCG00000010877	HNRNPU	80	68.085	ENSTNIG00000009725	hnrnpub	90	68.085	Tetraodon_nigroviridis
ENSSSCG00000010877	HNRNPU	71	100.000	ENSTTRG00000005281	HNRNPU	71	100.000	Tursiops_truncatus
ENSSSCG00000010877	HNRNPU	100	99.030	ENSUAMG00000021120	HNRNPU	100	99.030	Ursus_americanus
ENSSSCG00000010877	HNRNPU	89	99.000	ENSUMAG00000012322	HNRNPU	99	95.536	Ursus_maritimus
ENSSSCG00000010877	HNRNPU	80	98.198	ENSVPAG00000010520	HNRNPU	91	98.198	Vicugna_pacos
ENSSSCG00000010877	HNRNPU	100	98.759	ENSVVUG00000026524	HNRNPU	100	98.759	Vulpes_vulpes
ENSSSCG00000010877	HNRNPU	99	67.840	ENSXETG00000011386	hnrnpu	99	69.841	Xenopus_tropicalis
ENSSSCG00000010877	HNRNPU	99	46.726	ENSXMAG00000010356	hnrnpub	89	59.459	Xiphophorus_maculatus