EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000011117 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 330909 bases
Position: chr10:59774505-60105413
Accession: 100621126
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000032037	Upf2	PF04050.14	5.5e-33	1	1
ENSSSCP00000045224	Upf2	PF04050.14	5.5e-33	1	1
ENSSSCP00000023967	Upf2	PF04050.14	5.6e-33	1	1
ENSSSCP00000055816	Upf2	PF04050.14	8.7e-33	1	1
ENSSSCP00000027852	Upf2	PF04050.14	8.9e-33	1	1
ENSSSCP00000055115	Upf2	PF04050.14	9e-33	1	1
ENSSSCP00000011856	Upf2	PF04050.14	1.5e-08	1	1
ENSSSCP00000011856	MIF4G	PF02854.19	6.1e-72	1	2
ENSSSCP00000011856	MIF4G	PF02854.19	6.1e-72	2	2
ENSSSCP00000032037	MIF4G	PF02854.19	7.4e-72	1	2
ENSSSCP00000032037	MIF4G	PF02854.19	7.4e-72	2	2
ENSSSCP00000045224	MIF4G	PF02854.19	7.4e-72	1	2
ENSSSCP00000045224	MIF4G	PF02854.19	7.4e-72	2	2
ENSSSCP00000027852	MIF4G	PF02854.19	7.7e-72	1	2
ENSSSCP00000027852	MIF4G	PF02854.19	7.7e-72	2	2
ENSSSCP00000055816	MIF4G	PF02854.19	7.9e-72	1	2
ENSSSCP00000055816	MIF4G	PF02854.19	7.9e-72	2	2
ENSSSCP00000055115	MIF4G	PF02854.19	9.2e-72	1	2
ENSSSCP00000055115	MIF4G	PF02854.19	9.2e-72	2	2
ENSSSCP00000023967	MIF4G	PF02854.19	8.8e-62	1	2
ENSSSCP00000023967	MIF4G	PF02854.19	8.8e-62	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000061084	-	3499	-	ENSSSCP00000055816	884 (aa)	-	A0A287BHH7
ENSSSCT00000065261	-	3607	-	ENSSSCP00000055115	920 (aa)	-	A0A287BFL0
ENSSSCT00000050826	-	5237	XM_021064994	ENSSSCP00000045224	869 (aa)	XP_020920653	A0A286ZKF0
ENSSSCT00000012166	-	3286	-	ENSSSCP00000011856	813 (aa)	-	F1RUP4
ENSSSCT00000029333	-	3478	-	ENSSSCP00000027852	877 (aa)	-	I3LUQ1
ENSSSCT00000032194	-	4084	-	ENSSSCP00000023967	832 (aa)	-	I3LIR1
ENSSSCT00000059021	-	5220	-	ENSSSCP00000032037	869 (aa)	-	A0A286ZKF0

Gene Model

Click here to download ENSSSCG00000011117's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000011117's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000011117	-	100	98.964	ENSG00000151461	UPF2	68	98.964	Homo_sapiens
ENSSSCG00000011117	-	99	77.904	ENSAPOG00000015837	UPF2	67	78.506	Acanthochromis_polyacanthus
ENSSSCG00000011117	-	100	98.849	ENSAMEG00000004586	UPF2	68	98.962	Ailuropoda_melanoleuca
ENSSSCG00000011117	-	99	84.994	ENSACIG00000018078	UPF2	68	84.765	Amphilophus_citrinellus
ENSSSCG00000011117	-	99	85.029	ENSAOCG00000016766	UPF2	68	84.994	Amphiprion_ocellaris
ENSSSCG00000011117	-	99	85.029	ENSAPEG00000019084	UPF2	68	84.994	Amphiprion_percula
ENSSSCG00000011117	-	99	84.528	ENSATEG00000021677	UPF2	68	84.493	Anabas_testudineus
ENSSSCG00000011117	-	100	90.679	ENSAPLG00000010287	UPF2	68	90.196	Anas_platyrhynchos
ENSSSCG00000011117	-	100	93.671	ENSACAG00000009259	UPF2	68	93.671	Anolis_carolinensis
ENSSSCG00000011117	-	99	89.183	ENSANAG00000028451	UPF2	68	89.183	Aotus_nancymaae
ENSSSCG00000011117	-	99	85.029	ENSACLG00000012696	UPF2	68	84.800	Astatotilapia_calliptera
ENSSSCG00000011117	-	99	84.977	ENSAMXG00000013700	UPF2	67	85.632	Astyanax_mexicanus
ENSSSCG00000011117	-	100	98.770	ENSBTAG00000000288	UPF2	68	98.734	Bos_taurus
ENSSSCG00000011117	-	100	98.734	ENSCJAG00000020685	UPF2	68	98.734	Callithrix_jacchus
ENSSSCG00000011117	-	100	98.964	ENSCAFG00000004839	UPF2	68	98.964	Canis_familiaris
ENSSSCG00000011117	-	99	95.386	ENSCAFG00020005882	UPF2	68	95.386	Canis_lupus_dingo
ENSSSCG00000011117	-	100	98.734	ENSCHIG00000020359	UPF2	68	98.734	Capra_hircus
ENSSSCG00000011117	-	100	98.849	ENSTSYG00000000935	UPF2	68	98.849	Carlito_syrichta
ENSSSCG00000011117	-	99	83.391	ENSCAPG00000016658	UPF2	69	82.814	Cavia_aperea
ENSSSCG00000011117	-	99	95.502	ENSCPOG00000008809	UPF2	69	95.502	Cavia_porcellus
ENSSSCG00000011117	-	100	90.909	ENSCCAG00000035991	UPF2	67	90.909	Cebus_capucinus
ENSSSCG00000011117	-	100	99.079	ENSCATG00000032679	UPF2	68	99.079	Cercocebus_atys
ENSSSCG00000011117	-	100	98.274	ENSCLAG00000011434	UPF2	68	98.274	Chinchilla_lanigera
ENSSSCG00000011117	-	100	99.079	ENSCSAG00000013372	UPF2	68	99.079	Chlorocebus_sabaeus
ENSSSCG00000011117	-	85	98.661	ENSCHOG00000000422	UPF2	60	98.661	Choloepus_hoffmanni
ENSSSCG00000011117	-	99	95.040	ENSCPBG00000027823	UPF2	69	95.040	Chrysemys_picta_bellii
ENSSSCG00000011117	-	99	48.750	ENSCSAVG00000007772	-	66	50.536	Ciona_savignyi
ENSSSCG00000011117	-	99	89.738	ENSCANG00000040396	UPF2	68	90.668	Colobus_angolensis_palliatus
ENSSSCG00000011117	-	100	98.389	ENSCGRG00001019347	Upf2	68	98.389	Cricetulus_griseus_chok1gshd
ENSSSCG00000011117	-	100	98.389	ENSCGRG00000017993	Upf2	68	98.389	Cricetulus_griseus_crigri
ENSSSCG00000011117	-	99	78.923	ENSCSEG00000003520	UPF2	67	78.456	Cynoglossus_semilaevis
ENSSSCG00000011117	-	99	84.817	ENSCVAG00000006167	UPF2	93	85.240	Cyprinodon_variegatus
ENSSSCG00000011117	-	56	79.913	ENSDARG00000111388	CABZ01068469.1	88	81.206	Danio_rerio
ENSSSCG00000011117	-	100	98.389	ENSDNOG00000018160	UPF2	68	98.389	Dasypus_novemcinctus
ENSSSCG00000011117	-	100	97.929	ENSDORG00000002478	Upf2	68	97.929	Dipodomys_ordii
ENSSSCG00000011117	-	92	43.011	FBgn0029992	Upf2	59	43.860	Drosophila_melanogaster
ENSSSCG00000011117	-	59	84.270	ENSEBUG00000012448	-	50	84.270	Eptatretus_burgeri
ENSSSCG00000011117	-	100	99.079	ENSEASG00005019274	UPF2	68	99.079	Equus_asinus_asinus
ENSSSCG00000011117	-	100	99.079	ENSECAG00000017022	UPF2	68	99.079	Equus_caballus
ENSSSCG00000011117	-	72	100.000	ENSEEUG00000007819	UPF2	50	95.208	Erinaceus_europaeus
ENSSSCG00000011117	-	99	84.289	ENSELUG00000012014	UPF2	68	84.642	Esox_lucius
ENSSSCG00000011117	-	100	99.448	ENSFCAG00000005785	UPF2	68	98.849	Felis_catus
ENSSSCG00000011117	-	100	95.167	ENSFALG00000001889	UPF2	67	95.167	Ficedula_albicollis
ENSSSCG00000011117	-	100	98.389	ENSFDAG00000014348	UPF2	68	98.389	Fukomys_damarensis
ENSSSCG00000011117	-	99	85.143	ENSFHEG00000009826	UPF2	69	84.571	Fundulus_heteroclitus
ENSSSCG00000011117	-	99	83.238	ENSGMOG00000005557	UPF2	68	83.295	Gadus_morhua
ENSSSCG00000011117	-	100	95.287	ENSGALG00000033772	UPF2	68	95.287	Gallus_gallus
ENSSSCG00000011117	-	99	84.571	ENSGAFG00000020867	UPF2	68	84.229	Gambusia_affinis
ENSSSCG00000011117	-	99	84.114	ENSGACG00000001080	UPF2	68	84.765	Gasterosteus_aculeatus
ENSSSCG00000011117	-	100	100.000	ENSGAGG00000002700	UPF2	68	94.361	Gopherus_agassizii
ENSSSCG00000011117	-	100	98.964	ENSGGOG00000001479	UPF2	68	98.964	Gorilla_gorilla
ENSSSCG00000011117	-	99	84.994	ENSHBUG00000004249	UPF2	68	84.765	Haplochromis_burtoni
ENSSSCG00000011117	-	100	98.619	ENSHGLG00000015176	-	68	98.619	Heterocephalus_glaber_female
ENSSSCG00000011117	-	99	88.364	ENSHGLG00000003822	-	69	87.903	Heterocephalus_glaber_female
ENSSSCG00000011117	-	99	98.385	ENSHGLG00100010036	UPF2	69	98.385	Heterocephalus_glaber_male
ENSSSCG00000011117	-	99	83.753	ENSHCOG00000004025	UPF2	68	83.886	Hippocampus_comes
ENSSSCG00000011117	-	99	84.554	ENSIPUG00000015524	UPF2	68	84.651	Ictalurus_punctatus
ENSSSCG00000011117	-	100	98.504	ENSSTOG00000013075	UPF2	68	98.504	Ictidomys_tridecemlineatus
ENSSSCG00000011117	-	100	97.699	ENSJJAG00000004913	Upf2	68	97.699	Jaculus_jaculus
ENSSSCG00000011117	-	99	84.091	ENSKMAG00000001071	UPF2	69	84.151	Kryptolebias_marmoratus
ENSSSCG00000011117	-	99	84.983	ENSLBEG00000016394	-	68	85.029	Labrus_bergylta
ENSSSCG00000011117	-	75	84.918	ENSLBEG00000000728	-	55	84.918	Labrus_bergylta
ENSSSCG00000011117	-	99	77.677	ENSLACG00000015945	UPF2	69	78.653	Latimeria_chalumnae
ENSSSCG00000011117	-	99	88.114	ENSLOCG00000015698	UPF2	69	88.000	Lepisosteus_oculatus
ENSSSCG00000011117	-	100	99.079	ENSMFAG00000043865	UPF2	68	99.079	Macaca_fascicularis
ENSSSCG00000011117	-	100	99.079	ENSMMUG00000008241	UPF2	68	99.079	Macaca_mulatta
ENSSSCG00000011117	-	77	98.392	ENSMNEG00000008062	UPF2	61	98.392	Macaca_nemestrina
ENSSSCG00000011117	-	99	94.178	ENSMLEG00000036120	UPF2	67	99.758	Mandrillus_leucophaeus
ENSSSCG00000011117	-	99	84.414	ENSMAMG00000018276	UPF2	68	84.493	Mastacembelus_armatus
ENSSSCG00000011117	-	99	85.029	ENSMZEG00005021595	UPF2	68	84.800	Maylandia_zebra
ENSSSCG00000011117	-	99	94.925	ENSMGAG00000004573	UPF2	68	94.694	Meleagris_gallopavo
ENSSSCG00000011117	-	100	95.052	ENSMAUG00000016512	Upf2	68	95.052	Mesocricetus_auratus
ENSSSCG00000011117	-	93	99.490	ENSMICG00000001716	UPF2	66	99.482	Microcebus_murinus
ENSSSCG00000011117	-	100	97.814	ENSMOCG00000008263	Upf2	68	97.814	Microtus_ochrogaster
ENSSSCG00000011117	-	99	81.787	ENSMMOG00000006528	UPF2	68	81.609	Mola_mola
ENSSSCG00000011117	-	100	96.663	ENSMODG00000016794	UPF2	68	96.663	Monodelphis_domestica
ENSSSCG00000011117	-	99	84.289	ENSMALG00000002663	UPF2	68	84.138	Monopterus_albus
ENSSSCG00000011117	-	100	98.274	MGP_CAROLIEiJ_G0023157	Upf2	100	98.286	Mus_caroli
ENSSSCG00000011117	-	100	97.929	ENSMUSG00000043241	Upf2	99	97.714	Mus_musculus
ENSSSCG00000011117	-	100	97.583	MGP_PahariEiJ_G0019217	Upf2	100	97.714	Mus_pahari
ENSSSCG00000011117	-	100	97.929	MGP_SPRETEiJ_G0024075	Upf2	100	97.714	Mus_spretus
ENSSSCG00000011117	-	100	99.194	ENSMPUG00000001064	UPF2	68	99.194	Mustela_putorius_furo
ENSSSCG00000011117	-	99	98.391	ENSMLUG00000000228	UPF2	68	98.391	Myotis_lucifugus
ENSSSCG00000011117	-	99	85.029	ENSNBRG00000013629	UPF2	68	84.800	Neolamprologus_brichardi
ENSSSCG00000011117	-	100	98.849	ENSNLEG00000012058	UPF2	68	98.849	Nomascus_leucogenys
ENSSSCG00000011117	-	82	100.000	ENSOPRG00000006801	-	56	100.000	Ochotona_princeps
ENSSSCG00000011117	-	100	98.044	ENSODEG00000001290	UPF2	68	98.044	Octodon_degus
ENSSSCG00000011117	-	99	85.143	ENSONIG00000017991	UPF2	68	84.914	Oreochromis_niloticus
ENSSSCG00000011117	-	58	97.021	ENSOANG00000019744	-	93	97.021	Ornithorhynchus_anatinus
ENSSSCG00000011117	-	99	98.385	ENSOCUG00000006230	UPF2	68	98.385	Oryctolagus_cuniculus
ENSSSCG00000011117	-	99	83.409	ENSORLG00000017189	UPF2	68	84.036	Oryzias_latipes
ENSSSCG00000011117	-	99	83.523	ENSORLG00020005969	UPF2	68	84.151	Oryzias_latipes_hni
ENSSSCG00000011117	-	99	83.523	ENSORLG00015005713	UPF2	68	84.151	Oryzias_latipes_hsok
ENSSSCG00000011117	-	99	78.563	ENSOMEG00000023420	UPF2	66	79.247	Oryzias_melastigma
ENSSSCG00000011117	-	100	98.734	ENSOGAG00000005796	UPF2	68	98.734	Otolemur_garnettii
ENSSSCG00000011117	-	100	98.507	ENSOARG00000014587	UPF2	68	98.507	Ovis_aries
ENSSSCG00000011117	-	99	93.151	ENSPPAG00000037953	UPF2	68	94.233	Pan_paniscus
ENSSSCG00000011117	-	100	98.849	ENSPPRG00000000690	UPF2	68	98.849	Panthera_pardus
ENSSSCG00000011117	-	100	98.849	ENSPTIG00000008867	UPF2	68	98.849	Panthera_tigris_altaica
ENSSSCG00000011117	-	100	98.964	ENSPTRG00000002291	UPF2	68	98.964	Pan_troglodytes
ENSSSCG00000011117	-	100	98.964	ENSPANG00000023399	UPF2	68	98.964	Papio_anubis
ENSSSCG00000011117	-	99	83.657	ENSPKIG00000025502	UPF2	68	83.886	Paramormyrops_kingsleyae
ENSSSCG00000011117	-	99	81.954	ENSPMGG00000005259	UPF2	68	83.103	Periophthalmus_magnuspinnatus
ENSSSCG00000011117	-	96	82.275	ENSPEMG00000015731	Upf2	69	82.854	Peromyscus_maniculatus_bairdii
ENSSSCG00000011117	-	100	96.548	ENSPCIG00000006656	UPF2	68	96.548	Phascolarctos_cinereus
ENSSSCG00000011117	-	99	85.029	ENSPFOG00000017118	UPF2	68	84.571	Poecilia_formosa
ENSSSCG00000011117	-	99	85.029	ENSPLAG00000005094	UPF2	68	84.571	Poecilia_latipinna
ENSSSCG00000011117	-	99	85.029	ENSPMEG00000017009	UPF2	68	84.571	Poecilia_mexicana
ENSSSCG00000011117	-	99	84.598	ENSPREG00000021880	UPF2	68	84.598	Poecilia_reticulata
ENSSSCG00000011117	-	96	98.923	ENSPPYG00000002089	-	100	98.923	Pongo_abelii
ENSSSCG00000011117	-	95	94.787	ENSPCAG00000000684	UPF2	62	94.787	Procavia_capensis
ENSSSCG00000011117	-	99	94.579	ENSPCOG00000021656	UPF2	67	94.810	Propithecus_coquereli
ENSSSCG00000011117	-	100	89.758	ENSPVAG00000017286	UPF2	68	89.758	Pteropus_vampyrus
ENSSSCG00000011117	-	99	83.570	ENSPNYG00000017096	UPF2	67	83.333	Pundamilia_nyererei
ENSSSCG00000011117	-	99	84.783	ENSPNAG00000009357	UPF2	68	85.584	Pygocentrus_nattereri
ENSSSCG00000011117	-	99	88.876	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSSSCG00000011117	-	99	98.962	ENSRBIG00000037780	UPF2	69	98.962	Rhinopithecus_bieti
ENSSSCG00000011117	-	100	98.964	ENSRROG00000043547	UPF2	68	98.964	Rhinopithecus_roxellana
ENSSSCG00000011117	-	100	98.849	ENSSBOG00000020012	UPF2	68	98.849	Saimiri_boliviensis_boliviensis
ENSSSCG00000011117	-	99	85.000	ENSSFOG00015023788	upf2	69	84.659	Scleropages_formosus
ENSSSCG00000011117	-	99	82.098	ENSSMAG00000007637	UPF2	68	82.554	Scophthalmus_maximus
ENSSSCG00000011117	-	99	84.800	ENSSDUG00000017244	UPF2	68	84.800	Seriola_dumerili
ENSSSCG00000011117	-	99	82.299	ENSSLDG00000016866	UPF2	67	82.414	Seriola_lalandi_dorsalis
ENSSSCG00000011117	-	100	96.433	ENSSARG00000008615	UPF2	68	96.433	Sorex_araneus
ENSSSCG00000011117	-	99	91.935	ENSSPUG00000014544	UPF2	72	96.907	Sphenodon_punctatus
ENSSSCG00000011117	-	99	95.150	ENSTGUG00000002163	-	68	95.150	Taeniopygia_guttata
ENSSSCG00000011117	-	99	84.151	ENSTRUG00000007519	UPF2	68	84.036	Takifugu_rubripes
ENSSSCG00000011117	-	99	83.618	ENSTNIG00000004453	UPF2	71	83.504	Tetraodon_nigroviridis
ENSSSCG00000011117	-	90	87.805	ENSTBEG00000012679	UPF2	61	88.318	Tupaia_belangeri
ENSSSCG00000011117	-	100	98.619	ENSTTRG00000016388	UPF2	68	98.619	Tursiops_truncatus
ENSSSCG00000011117	-	92	100.000	ENSUAMG00000023560	UPF2	66	100.000	Ursus_americanus
ENSSSCG00000011117	-	100	99.194	ENSUMAG00000012953	UPF2	65	99.194	Ursus_maritimus
ENSSSCG00000011117	-	83	96.774	ENSVPAG00000006763	UPF2	54	96.774	Vicugna_pacos
ENSSSCG00000011117	-	100	98.964	ENSVVUG00000006166	UPF2	68	98.964	Vulpes_vulpes
ENSSSCG00000011117	-	99	87.629	ENSXETG00000033103	UPF2	69	87.041	Xenopus_tropicalis
ENSSSCG00000011117	-	99	84.078	ENSXCOG00000011604	UPF2	68	84.307	Xiphophorus_couchianus
ENSSSCG00000011117	-	99	84.686	ENSXMAG00000017209	UPF2	68	84.229	Xiphophorus_maculatus