EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000011529 (Gene tree)
Gene ID: 100153838
Gene Symbol: TRNT1
Alias: CCA1|CGI-47|MtCCA
Full Name: tRNA nucleotidyl transferase 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 24388 bases
Position: chr13:59711013-59735400
Accession: 100153838
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000058190	PolyA_pol	PF01743.20	2.7e-33	1	1
ENSSSCP00000012289	PolyA_pol	PF01743.20	2.7e-33	1	1
ENSSSCP00000041915	PolyA_pol	PF01743.20	2.7e-33	1	1
ENSSSCP00000053546	PolyA_pol	PF01743.20	2.7e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000012619	TRNT1-201	4767	XM_021069267	ENSSSCP00000012289	434 (aa)	XP_020924926	F1SFL7
ENSSSCT00000057067	TRNT1-204	3960	-	ENSSSCP00000058190	429 (aa)	-	A0A287BNV0
ENSSSCT00000050351	TRNT1-203	3018	XM_021069268	ENSSSCP00000041915	434 (aa)	XP_020924927	F1SFL7
ENSSSCT00000063306	TRNT1-202	5760	XM_021069269	ENSSSCP00000053546	434 (aa)	XP_020924928	F1SFL7

Gene Model

Click here to download ENSSSCG00000011529's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000011529's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000011529	TRNT1	100	92.627	ENSG00000072756	TRNT1	100	92.627	Homo_sapiens
ENSSSCG00000011529	TRNT1	99	66.200	ENSAPOG00000013687	trnt1	99	66.200	Acanthochromis_polyacanthus
ENSSSCG00000011529	TRNT1	100	91.743	ENSAMEG00000014520	TRNT1	100	91.743	Ailuropoda_melanoleuca
ENSSSCG00000011529	TRNT1	98	68.235	ENSACIG00000021706	trnt1	99	68.235	Amphilophus_citrinellus
ENSSSCG00000011529	TRNT1	98	67.529	ENSAOCG00000024612	trnt1	99	67.529	Amphiprion_ocellaris
ENSSSCG00000011529	TRNT1	98	59.857	ENSAPEG00000022627	trnt1	98	59.857	Amphiprion_percula
ENSSSCG00000011529	TRNT1	93	70.720	ENSATEG00000008928	trnt1	99	70.720	Anabas_testudineus
ENSSSCG00000011529	TRNT1	89	76.053	ENSAPLG00000004258	TRNT1	96	75.969	Anas_platyrhynchos
ENSSSCG00000011529	TRNT1	98	75.118	ENSACAG00000005657	TRNT1	98	75.116	Anolis_carolinensis
ENSSSCG00000011529	TRNT1	100	93.088	ENSANAG00000024802	TRNT1	100	93.088	Aotus_nancymaae
ENSSSCG00000011529	TRNT1	98	67.059	ENSACLG00000022227	trnt1	99	67.059	Astatotilapia_calliptera
ENSSSCG00000011529	TRNT1	99	68.065	ENSAMXG00000003960	trnt1	99	67.907	Astyanax_mexicanus
ENSSSCG00000011529	TRNT1	100	94.931	ENSBTAG00000019534	TRNT1	100	94.931	Bos_taurus
ENSSSCG00000011529	TRNT1	94	43.780	WBGene00010089	hpo-31	94	43.780	Caenorhabditis_elegans
ENSSSCG00000011529	TRNT1	100	93.088	ENSCJAG00000015466	TRNT1	100	93.088	Callithrix_jacchus
ENSSSCG00000011529	TRNT1	100	91.935	ENSCAFG00000005985	TRNT1	99	91.935	Canis_familiaris
ENSSSCG00000011529	TRNT1	100	91.935	ENSCAFG00020014746	TRNT1	99	91.935	Canis_lupus_dingo
ENSSSCG00000011529	TRNT1	100	94.931	ENSCHIG00000007030	TRNT1	99	94.931	Capra_hircus
ENSSSCG00000011529	TRNT1	100	93.318	ENSTSYG00000013390	TRNT1	100	93.318	Carlito_syrichta
ENSSSCG00000011529	TRNT1	87	74.868	ENSCAPG00000006891	TRNT1	100	74.868	Cavia_aperea
ENSSSCG00000011529	TRNT1	99	90.762	ENSCPOG00000007849	TRNT1	99	90.762	Cavia_porcellus
ENSSSCG00000011529	TRNT1	95	90.144	ENSCCAG00000002919	TRNT1	100	92.020	Cebus_capucinus
ENSSSCG00000011529	TRNT1	99	93.072	ENSCATG00000031985	TRNT1	99	93.072	Cercocebus_atys
ENSSSCG00000011529	TRNT1	99	91.315	ENSCLAG00000005186	TRNT1	99	91.224	Chinchilla_lanigera
ENSSSCG00000011529	TRNT1	100	93.548	ENSCSAG00000011052	TRNT1	100	93.548	Chlorocebus_sabaeus
ENSSSCG00000011529	TRNT1	85	90.594	ENSCHOG00000005712	TRNT1	85	90.594	Choloepus_hoffmanni
ENSSSCG00000011529	TRNT1	94	80.882	ENSCPBG00000017636	TRNT1	93	80.882	Chrysemys_picta_bellii
ENSSSCG00000011529	TRNT1	93	43.980	ENSCING00000007069	-	100	43.980	Ciona_intestinalis
ENSSSCG00000011529	TRNT1	97	44.235	ENSCSAVG00000007494	-	100	44.235	Ciona_savignyi
ENSSSCG00000011529	TRNT1	100	93.088	ENSCANG00000039030	TRNT1	100	93.088	Colobus_angolensis_palliatus
ENSSSCG00000011529	TRNT1	100	91.014	ENSCGRG00001009998	Trnt1	100	91.014	Cricetulus_griseus_chok1gshd
ENSSSCG00000011529	TRNT1	100	91.014	ENSCGRG00000013410	Trnt1	100	91.014	Cricetulus_griseus_crigri
ENSSSCG00000011529	TRNT1	94	68.966	ENSCSEG00000008157	trnt1	95	68.966	Cynoglossus_semilaevis
ENSSSCG00000011529	TRNT1	94	68.537	ENSCVAG00000019770	trnt1	96	68.537	Cyprinodon_variegatus
ENSSSCG00000011529	TRNT1	97	68.841	ENSDARG00000075297	trnt1	97	68.483	Danio_rerio
ENSSSCG00000011529	TRNT1	100	90.553	ENSDNOG00000008837	TRNT1	100	90.553	Dasypus_novemcinctus
ENSSSCG00000011529	TRNT1	100	88.940	ENSDORG00000014035	Trnt1	100	88.940	Dipodomys_ordii
ENSSSCG00000011529	TRNT1	92	48.515	FBgn0037369	CG2100	83	48.515	Drosophila_melanogaster
ENSSSCG00000011529	TRNT1	58	89.558	ENSETEG00000018177	TRNT1	100	89.558	Echinops_telfairi
ENSSSCG00000011529	TRNT1	93	62.531	ENSEBUG00000012779	-	95	62.531	Eptatretus_burgeri
ENSSSCG00000011529	TRNT1	100	93.318	ENSEASG00005003577	TRNT1	100	93.318	Equus_asinus_asinus
ENSSSCG00000011529	TRNT1	100	93.548	ENSECAG00000014420	TRNT1	100	93.548	Equus_caballus
ENSSSCG00000011529	TRNT1	100	89.401	ENSEEUG00000009567	TRNT1	100	89.401	Erinaceus_europaeus
ENSSSCG00000011529	TRNT1	98	69.359	ENSELUG00000003802	trnt1	99	68.765	Esox_lucius
ENSSSCG00000011529	TRNT1	100	92.627	ENSFCAG00000026805	TRNT1	99	92.627	Felis_catus
ENSSSCG00000011529	TRNT1	89	74.545	ENSFALG00000013539	TRNT1	100	74.545	Ficedula_albicollis
ENSSSCG00000011529	TRNT1	99	91.455	ENSFDAG00000018412	TRNT1	99	91.455	Fukomys_damarensis
ENSSSCG00000011529	TRNT1	96	67.376	ENSFHEG00000019294	trnt1	99	67.376	Fundulus_heteroclitus
ENSSSCG00000011529	TRNT1	97	66.268	ENSGMOG00000007460	trnt1	97	66.194	Gadus_morhua
ENSSSCG00000011529	TRNT1	94	74.631	ENSGALG00000017368	TRNT1	94	74.631	Gallus_gallus
ENSSSCG00000011529	TRNT1	96	67.139	ENSGAFG00000008647	trnt1	99	67.139	Gambusia_affinis
ENSSSCG00000011529	TRNT1	94	67.980	ENSGACG00000011903	trnt1	96	68.586	Gasterosteus_aculeatus
ENSSSCG00000011529	TRNT1	96	80.048	ENSGAGG00000020942	TRNT1	95	80.048	Gopherus_agassizii
ENSSSCG00000011529	TRNT1	100	92.627	ENSGGOG00000015286	TRNT1	100	92.627	Gorilla_gorilla
ENSSSCG00000011529	TRNT1	98	67.059	ENSHBUG00000002797	trnt1	99	67.059	Haplochromis_burtoni
ENSSSCG00000011529	TRNT1	99	90.531	ENSHGLG00000003649	TRNT1	99	90.531	Heterocephalus_glaber_female
ENSSSCG00000011529	TRNT1	99	86.118	ENSHGLG00000000221	-	99	85.945	Heterocephalus_glaber_female
ENSSSCG00000011529	TRNT1	99	89.607	ENSHGLG00100016421	TRNT1	99	89.607	Heterocephalus_glaber_male
ENSSSCG00000011529	TRNT1	94	68.227	ENSHCOG00000010618	trnt1	95	68.227	Hippocampus_comes
ENSSSCG00000011529	TRNT1	96	67.788	ENSIPUG00000000971	trnt1	97	67.788	Ictalurus_punctatus
ENSSSCG00000011529	TRNT1	100	87.558	ENSSTOG00000000150	TRNT1	98	90.594	Ictidomys_tridecemlineatus
ENSSSCG00000011529	TRNT1	100	91.475	ENSJJAG00000018561	Trnt1	99	91.475	Jaculus_jaculus
ENSSSCG00000011529	TRNT1	96	67.453	ENSKMAG00000011307	trnt1	99	67.453	Kryptolebias_marmoratus
ENSSSCG00000011529	TRNT1	96	62.927	ENSLBEG00000019457	trnt1	97	62.927	Labrus_bergylta
ENSSSCG00000011529	TRNT1	96	73.735	ENSLACG00000013227	TRNT1	96	73.735	Latimeria_chalumnae
ENSSSCG00000011529	TRNT1	98	70.142	ENSLOCG00000011105	trnt1	98	69.930	Lepisosteus_oculatus
ENSSSCG00000011529	TRNT1	100	93.318	ENSLAFG00000023191	TRNT1	100	93.318	Loxodonta_africana
ENSSSCG00000011529	TRNT1	99	93.303	ENSMFAG00000045113	TRNT1	99	93.303	Macaca_fascicularis
ENSSSCG00000011529	TRNT1	99	93.303	ENSMMUG00000017983	TRNT1	99	93.303	Macaca_mulatta
ENSSSCG00000011529	TRNT1	99	93.303	ENSMNEG00000037805	TRNT1	99	93.303	Macaca_nemestrina
ENSSSCG00000011529	TRNT1	88	94.503	ENSMLEG00000033671	TRNT1	99	94.503	Mandrillus_leucophaeus
ENSSSCG00000011529	TRNT1	98	68.235	ENSMAMG00000023401	trnt1	99	68.235	Mastacembelus_armatus
ENSSSCG00000011529	TRNT1	98	67.059	ENSMZEG00005009141	trnt1	99	67.059	Maylandia_zebra
ENSSSCG00000011529	TRNT1	74	74.455	ENSMGAG00000009971	TRNT1	100	74.455	Meleagris_gallopavo
ENSSSCG00000011529	TRNT1	100	91.014	ENSMAUG00000020707	Trnt1	100	91.014	Mesocricetus_auratus
ENSSSCG00000011529	TRNT1	100	92.627	ENSMICG00000016615	TRNT1	100	92.627	Microcebus_murinus
ENSSSCG00000011529	TRNT1	100	90.553	ENSMOCG00000004539	Trnt1	100	90.553	Microtus_ochrogaster
ENSSSCG00000011529	TRNT1	98	66.824	ENSMMOG00000010742	trnt1	99	66.824	Mola_mola
ENSSSCG00000011529	TRNT1	100	83.180	ENSMODG00000004368	TRNT1	100	83.180	Monodelphis_domestica
ENSSSCG00000011529	TRNT1	98	67.059	ENSMALG00000008376	trnt1	99	67.059	Monopterus_albus
ENSSSCG00000011529	TRNT1	100	91.244	MGP_CAROLIEiJ_G0028698	Trnt1	100	91.244	Mus_caroli
ENSSSCG00000011529	TRNT1	100	91.244	ENSMUSG00000013736	Trnt1	100	91.244	Mus_musculus
ENSSSCG00000011529	TRNT1	100	90.553	MGP_PahariEiJ_G0022449	Trnt1	100	90.553	Mus_pahari
ENSSSCG00000011529	TRNT1	100	91.244	MGP_SPRETEiJ_G0029726	Trnt1	100	91.244	Mus_spretus
ENSSSCG00000011529	TRNT1	100	92.627	ENSMPUG00000017017	TRNT1	99	92.627	Mustela_putorius_furo
ENSSSCG00000011529	TRNT1	89	87.306	ENSMLUG00000011864	TRNT1	100	87.306	Myotis_lucifugus
ENSSSCG00000011529	TRNT1	100	90.783	ENSNGAG00000000537	Trnt1	100	90.783	Nannospalax_galili
ENSSSCG00000011529	TRNT1	81	66.763	ENSNBRG00000023606	trnt1	99	66.763	Neolamprologus_brichardi
ENSSSCG00000011529	TRNT1	100	93.548	ENSNLEG00000003226	TRNT1	100	93.548	Nomascus_leucogenys
ENSSSCG00000011529	TRNT1	100	83.180	ENSMEUG00000004684	TRNT1	100	83.180	Notamacropus_eugenii
ENSSSCG00000011529	TRNT1	88	80.679	ENSOPRG00000015067	TRNT1	99	80.679	Ochotona_princeps
ENSSSCG00000011529	TRNT1	99	90.993	ENSODEG00000007597	TRNT1	99	90.993	Octodon_degus
ENSSSCG00000011529	TRNT1	98	67.529	ENSONIG00000020273	trnt1	98	67.529	Oreochromis_niloticus
ENSSSCG00000011529	TRNT1	99	75.000	ENSOANG00000007514	TRNT1	99	75.000	Ornithorhynchus_anatinus
ENSSSCG00000011529	TRNT1	100	85.253	ENSOCUG00000008580	TRNT1	99	85.253	Oryctolagus_cuniculus
ENSSSCG00000011529	TRNT1	97	65.877	ENSORLG00000003165	trnt1	99	65.877	Oryzias_latipes
ENSSSCG00000011529	TRNT1	97	65.877	ENSORLG00020022060	trnt1	99	65.877	Oryzias_latipes_hni
ENSSSCG00000011529	TRNT1	97	65.403	ENSORLG00015018915	trnt1	99	65.403	Oryzias_latipes_hsok
ENSSSCG00000011529	TRNT1	95	65.291	ENSOMEG00000003331	trnt1	97	65.291	Oryzias_melastigma
ENSSSCG00000011529	TRNT1	100	94.700	ENSOARG00000008631	TRNT1	99	94.700	Ovis_aries
ENSSSCG00000011529	TRNT1	100	92.627	ENSPPAG00000043566	TRNT1	100	92.627	Pan_paniscus
ENSSSCG00000011529	TRNT1	99	92.379	ENSPPRG00000001327	TRNT1	99	92.379	Panthera_pardus
ENSSSCG00000011529	TRNT1	100	92.627	ENSPTIG00000011448	TRNT1	99	92.627	Panthera_tigris_altaica
ENSSSCG00000011529	TRNT1	100	92.627	ENSPTRG00000014564	TRNT1	100	92.627	Pan_troglodytes
ENSSSCG00000011529	TRNT1	99	93.072	ENSPANG00000025944	TRNT1	99	93.072	Papio_anubis
ENSSSCG00000011529	TRNT1	98	68.720	ENSPKIG00000020015	trnt1	99	68.140	Paramormyrops_kingsleyae
ENSSSCG00000011529	TRNT1	91	79.949	ENSPSIG00000017356	TRNT1	99	81.111	Pelodiscus_sinensis
ENSSSCG00000011529	TRNT1	98	66.118	ENSPMGG00000008888	trnt1	98	66.118	Periophthalmus_magnuspinnatus
ENSSSCG00000011529	TRNT1	100	91.705	ENSPEMG00000019845	Trnt1	100	91.705	Peromyscus_maniculatus_bairdii
ENSSSCG00000011529	TRNT1	100	83.180	ENSPCIG00000030436	TRNT1	100	83.180	Phascolarctos_cinereus
ENSSSCG00000011529	TRNT1	94	68.293	ENSPFOG00000006194	trnt1	96	68.293	Poecilia_formosa
ENSSSCG00000011529	TRNT1	94	68.293	ENSPLAG00000015623	trnt1	99	68.486	Poecilia_latipinna
ENSSSCG00000011529	TRNT1	96	66.903	ENSPMEG00000012216	trnt1	99	68.486	Poecilia_mexicana
ENSSSCG00000011529	TRNT1	94	68.719	ENSPREG00000021470	trnt1	96	68.719	Poecilia_reticulata
ENSSSCG00000011529	TRNT1	100	92.857	ENSPPYG00000013702	TRNT1	100	92.857	Pongo_abelii
ENSSSCG00000011529	TRNT1	88	91.123	ENSPCAG00000001951	TRNT1	100	91.123	Procavia_capensis
ENSSSCG00000011529	TRNT1	100	93.779	ENSPCOG00000022228	TRNT1	100	93.779	Propithecus_coquereli
ENSSSCG00000011529	TRNT1	88	92.287	ENSPVAG00000008784	TRNT1	100	92.188	Pteropus_vampyrus
ENSSSCG00000011529	TRNT1	98	67.059	ENSPNYG00000003120	trnt1	99	67.059	Pundamilia_nyererei
ENSSSCG00000011529	TRNT1	98	67.299	ENSPNAG00000000565	trnt1	99	66.977	Pygocentrus_nattereri
ENSSSCG00000011529	TRNT1	100	91.244	ENSRNOG00000006432	Trnt1	100	91.244	Rattus_norvegicus
ENSSSCG00000011529	TRNT1	100	90.553	ENSRBIG00000042632	TRNT1	100	90.553	Rhinopithecus_bieti
ENSSSCG00000011529	TRNT1	100	92.857	ENSRROG00000036866	TRNT1	100	92.857	Rhinopithecus_roxellana
ENSSSCG00000011529	TRNT1	100	93.088	ENSSBOG00000021208	TRNT1	100	93.088	Saimiri_boliviensis_boliviensis
ENSSSCG00000011529	TRNT1	100	83.410	ENSSHAG00000018861	TRNT1	100	83.410	Sarcophilus_harrisii
ENSSSCG00000011529	TRNT1	99	68.065	ENSSFOG00015020844	trnt1	99	68.458	Scleropages_formosus
ENSSSCG00000011529	TRNT1	98	67.529	ENSSMAG00000015432	trnt1	97	67.529	Scophthalmus_maximus
ENSSSCG00000011529	TRNT1	98	67.294	ENSSDUG00000012320	trnt1	99	67.294	Seriola_dumerili
ENSSSCG00000011529	TRNT1	57	64.490	ENSSLDG00000016463	-	91	65.417	Seriola_lalandi_dorsalis
ENSSSCG00000011529	TRNT1	98	67.294	ENSSLDG00000009325	trnt1	99	67.294	Seriola_lalandi_dorsalis
ENSSSCG00000011529	TRNT1	88	81.915	ENSSPUG00000014153	TRNT1	100	81.771	Sphenodon_punctatus
ENSSSCG00000011529	TRNT1	98	66.824	ENSSPAG00000021005	trnt1	99	66.824	Stegastes_partitus
ENSSSCG00000011529	TRNT1	93	74.623	ENSTGUG00000010192	TRNT1	99	74.568	Taeniopygia_guttata
ENSSSCG00000011529	TRNT1	98	67.765	ENSTRUG00000001088	trnt1	99	67.765	Takifugu_rubripes
ENSSSCG00000011529	TRNT1	99	67.056	ENSTNIG00000007363	trnt1	99	67.056	Tetraodon_nigroviridis
ENSSSCG00000011529	TRNT1	71	75.655	ENSTBEG00000006367	TRNT1	100	75.655	Tupaia_belangeri
ENSSSCG00000011529	TRNT1	100	94.931	ENSTTRG00000007803	TRNT1	100	94.931	Tursiops_truncatus
ENSSSCG00000011529	TRNT1	100	91.244	ENSUAMG00000022574	TRNT1	99	91.244	Ursus_americanus
ENSSSCG00000011529	TRNT1	100	91.705	ENSUMAG00000024092	TRNT1	99	91.705	Ursus_maritimus
ENSSSCG00000011529	TRNT1	100	92.166	ENSVVUG00000012810	TRNT1	99	92.166	Vulpes_vulpes
ENSSSCG00000011529	TRNT1	98	63.915	ENSXETG00000025091	trnt1	99	66.169	Xenopus_tropicalis
ENSSSCG00000011529	TRNT1	96	67.139	ENSXCOG00000010150	trnt1	96	68.537	Xiphophorus_couchianus
ENSSSCG00000011529	TRNT1	96	66.667	ENSXMAG00000002227	trnt1	96	68.049	Xiphophorus_maculatus