EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000011555 (Gene tree)
Gene ID: 100153857
Gene Symbol: RPUSD3
Alias: MGC29784
Full Name: RNA pseudouridine synthase D3
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 7949 bases
Position: chr13:66126124-66134072
Accession: 100153857
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000012313	PseudoU_synth_2	PF00849.22	6.6e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000012645	RPUSD3-201	1787	XM_001928397	ENSSSCP00000012313	352 (aa)	XP_001928432	F1SQE3

Gene Model

Click here to download ENSSSCG00000011555's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000011555's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000011555	RPUSD3	78	32.292	ENSSSCG00000015233	RPUSD4	72	32.292

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000011555	RPUSD3	100	80.966	ENSG00000156990	RPUSD3	100	80.966	Homo_sapiens
ENSSSCG00000011555	RPUSD3	100	79.545	ENSAMEG00000016227	RPUSD3	100	79.545	Ailuropoda_melanoleuca
ENSSSCG00000011555	RPUSD3	89	51.724	ENSACAG00000009836	RPUSD3	90	51.724	Anolis_carolinensis
ENSSSCG00000011555	RPUSD3	54	78.307	ENSANAG00000038118	-	90	78.307	Aotus_nancymaae
ENSSSCG00000011555	RPUSD3	56	80.303	ENSANAG00000019945	-	79	80.303	Aotus_nancymaae
ENSSSCG00000011555	RPUSD3	78	55.208	ENSANAG00000007127	-	98	55.208	Aotus_nancymaae
ENSSSCG00000011555	RPUSD3	98	80.814	ENSBTAG00000007968	RPUSD3	100	80.814	Bos_taurus
ENSSSCG00000011555	RPUSD3	100	79.261	ENSCAFG00000029733	RPUSD3	100	79.261	Canis_familiaris
ENSSSCG00000011555	RPUSD3	100	79.261	ENSCAFG00020008582	RPUSD3	100	79.261	Canis_lupus_dingo
ENSSSCG00000011555	RPUSD3	98	80.233	ENSCHIG00000026027	RPUSD3	100	80.233	Capra_hircus
ENSSSCG00000011555	RPUSD3	98	75.000	ENSTSYG00000009994	RPUSD3	99	75.000	Carlito_syrichta
ENSSSCG00000011555	RPUSD3	74	80.769	ENSCAPG00000017559	RPUSD3	98	80.769	Cavia_aperea
ENSSSCG00000011555	RPUSD3	98	66.763	ENSCPOG00000037956	RPUSD3	91	67.341	Cavia_porcellus
ENSSSCG00000011555	RPUSD3	100	78.409	ENSCCAG00000029530	RPUSD3	100	78.409	Cebus_capucinus
ENSSSCG00000011555	RPUSD3	100	80.966	ENSCATG00000036939	RPUSD3	100	80.966	Cercocebus_atys
ENSSSCG00000011555	RPUSD3	100	80.114	ENSCSAG00000010506	RPUSD3	100	80.114	Chlorocebus_sabaeus
ENSSSCG00000011555	RPUSD3	50	80.357	ENSCHOG00000010151	-	67	80.357	Choloepus_hoffmanni
ENSSSCG00000011555	RPUSD3	59	58.095	ENSCPBG00000008825	RPUSD3	95	52.529	Chrysemys_picta_bellii
ENSSSCG00000011555	RPUSD3	100	79.261	ENSCANG00000040711	RPUSD3	100	79.261	Colobus_angolensis_palliatus
ENSSSCG00000011555	RPUSD3	99	70.571	ENSCGRG00001004923	Rpusd3	97	70.571	Cricetulus_griseus_chok1gshd
ENSSSCG00000011555	RPUSD3	98	71.512	ENSCGRG00000018315	Rpusd3	100	71.512	Cricetulus_griseus_crigri
ENSSSCG00000011555	RPUSD3	99	74.286	ENSDNOG00000039160	RPUSD3	93	74.286	Dasypus_novemcinctus
ENSSSCG00000011555	RPUSD3	74	76.604	ENSDORG00000026827	Rpusd3	92	76.604	Dipodomys_ordii
ENSSSCG00000011555	RPUSD3	100	71.875	ENSETEG00000006538	RPUSD3	99	71.875	Echinops_telfairi
ENSSSCG00000011555	RPUSD3	58	38.835	ENSEBUG00000015605	RPUSD3	67	38.835	Eptatretus_burgeri
ENSSSCG00000011555	RPUSD3	100	80.114	ENSEASG00005014160	RPUSD3	98	80.114	Equus_asinus_asinus
ENSSSCG00000011555	RPUSD3	100	80.966	ENSECAG00000019988	RPUSD3	98	80.966	Equus_caballus
ENSSSCG00000011555	RPUSD3	99	57.746	ENSEEUG00000007353	RPUSD3	100	57.746	Erinaceus_europaeus
ENSSSCG00000011555	RPUSD3	100	79.830	ENSFCAG00000014199	RPUSD3	100	79.830	Felis_catus
ENSSSCG00000011555	RPUSD3	77	50.916	ENSFALG00000012968	RPUSD3	99	47.619	Ficedula_albicollis
ENSSSCG00000011555	RPUSD3	74	79.008	ENSFDAG00000008350	RPUSD3	81	79.008	Fukomys_damarensis
ENSSSCG00000011555	RPUSD3	61	59.259	ENSGAGG00000007493	RPUSD3	69	59.259	Gopherus_agassizii
ENSSSCG00000011555	RPUSD3	100	80.682	ENSGGOG00000013120	RPUSD3	100	80.682	Gorilla_gorilla
ENSSSCG00000011555	RPUSD3	97	63.472	ENSHGLG00000011722	RPUSD3	99	63.472	Heterocephalus_glaber_female
ENSSSCG00000011555	RPUSD3	97	63.472	ENSHGLG00100016038	RPUSD3	99	63.472	Heterocephalus_glaber_male
ENSSSCG00000011555	RPUSD3	99	74.212	ENSSTOG00000002125	RPUSD3	99	74.212	Ictidomys_tridecemlineatus
ENSSSCG00000011555	RPUSD3	98	69.767	ENSJJAG00000012679	Rpusd3	100	69.767	Jaculus_jaculus
ENSSSCG00000011555	RPUSD3	98	77.326	ENSLAFG00000017501	RPUSD3	100	77.326	Loxodonta_africana
ENSSSCG00000011555	RPUSD3	100	80.682	ENSMFAG00000032407	RPUSD3	100	80.682	Macaca_fascicularis
ENSSSCG00000011555	RPUSD3	100	76.705	ENSMMUG00000010628	RPUSD3	97	83.974	Macaca_mulatta
ENSSSCG00000011555	RPUSD3	100	80.398	ENSMNEG00000040308	RPUSD3	100	80.398	Macaca_nemestrina
ENSSSCG00000011555	RPUSD3	100	80.682	ENSMLEG00000033940	RPUSD3	100	80.682	Mandrillus_leucophaeus
ENSSSCG00000011555	RPUSD3	98	72.674	ENSMAUG00000015473	Rpusd3	100	72.674	Mesocricetus_auratus
ENSSSCG00000011555	RPUSD3	98	78.779	ENSMICG00000002315	RPUSD3	100	78.779	Microcebus_murinus
ENSSSCG00000011555	RPUSD3	97	70.968	ENSMOCG00000022613	Rpusd3	99	70.968	Microtus_ochrogaster
ENSSSCG00000011555	RPUSD3	89	58.333	ENSMODG00000005210	RPUSD3	82	58.333	Monodelphis_domestica
ENSSSCG00000011555	RPUSD3	98	70.349	MGP_CAROLIEiJ_G0028725	Rpusd3	100	70.349	Mus_caroli
ENSSSCG00000011555	RPUSD3	98	70.640	ENSMUSG00000051169	Rpusd3	100	70.640	Mus_musculus
ENSSSCG00000011555	RPUSD3	98	71.512	MGP_PahariEiJ_G0022476	Rpusd3	100	71.512	Mus_pahari
ENSSSCG00000011555	RPUSD3	98	70.640	MGP_SPRETEiJ_G0029753	Rpusd3	100	70.640	Mus_spretus
ENSSSCG00000011555	RPUSD3	100	78.125	ENSMPUG00000017132	RPUSD3	100	78.125	Mustela_putorius_furo
ENSSSCG00000011555	RPUSD3	97	83.918	ENSMLUG00000006135	RPUSD3	98	83.918	Myotis_lucifugus
ENSSSCG00000011555	RPUSD3	97	70.968	ENSNGAG00000023704	Rpusd3	99	70.968	Nannospalax_galili
ENSSSCG00000011555	RPUSD3	100	67.330	ENSNLEG00000004214	RPUSD3	95	82.178	Nomascus_leucogenys
ENSSSCG00000011555	RPUSD3	74	64.368	ENSMEUG00000013098	-	100	64.368	Notamacropus_eugenii
ENSSSCG00000011555	RPUSD3	99	60.920	ENSOPRG00000002300	RPUSD3	99	60.920	Ochotona_princeps
ENSSSCG00000011555	RPUSD3	75	78.788	ENSODEG00000018137	RPUSD3	91	78.788	Octodon_degus
ENSSSCG00000011555	RPUSD3	81	48.951	ENSOANG00000012081	-	99	48.951	Ornithorhynchus_anatinus
ENSSSCG00000011555	RPUSD3	98	63.610	ENSOCUG00000027885	RPUSD3	100	63.714	Oryctolagus_cuniculus
ENSSSCG00000011555	RPUSD3	89	80.573	ENSOGAG00000012592	RPUSD3	100	80.573	Otolemur_garnettii
ENSSSCG00000011555	RPUSD3	99	80.627	ENSOARG00000005928	RPUSD3	99	80.627	Ovis_aries
ENSSSCG00000011555	RPUSD3	100	80.114	ENSPPAG00000038083	RPUSD3	100	80.114	Pan_paniscus
ENSSSCG00000011555	RPUSD3	100	80.114	ENSPPRG00000024433	RPUSD3	100	80.114	Panthera_pardus
ENSSSCG00000011555	RPUSD3	98	81.686	ENSPTIG00000006828	RPUSD3	100	81.686	Panthera_tigris_altaica
ENSSSCG00000011555	RPUSD3	100	79.830	ENSPTRG00000051760	RPUSD3	100	79.830	Pan_troglodytes
ENSSSCG00000011555	RPUSD3	100	80.966	ENSPANG00000023885	RPUSD3	100	80.966	Papio_anubis
ENSSSCG00000011555	RPUSD3	98	72.965	ENSPEMG00000017245	Rpusd3	100	72.965	Peromyscus_maniculatus_bairdii
ENSSSCG00000011555	RPUSD3	96	57.895	ENSPCIG00000021901	RPUSD3	98	57.895	Phascolarctos_cinereus
ENSSSCG00000011555	RPUSD3	100	81.250	ENSPPYG00000013676	RPUSD3	100	81.250	Pongo_abelii
ENSSSCG00000011555	RPUSD3	82	59.170	ENSPCAG00000013731	-	100	59.170	Procavia_capensis
ENSSSCG00000011555	RPUSD3	100	81.818	ENSPCOG00000018314	RPUSD3	100	81.818	Propithecus_coquereli
ENSSSCG00000011555	RPUSD3	100	78.125	ENSPVAG00000011107	RPUSD3	100	78.125	Pteropus_vampyrus
ENSSSCG00000011555	RPUSD3	95	67.164	ENSRNOG00000009084	Rpusd3	96	67.164	Rattus_norvegicus
ENSSSCG00000011555	RPUSD3	99	80.571	ENSRBIG00000041230	RPUSD3	100	80.114	Rhinopithecus_bieti
ENSSSCG00000011555	RPUSD3	99	80.286	ENSRROG00000043328	RPUSD3	100	79.830	Rhinopithecus_roxellana
ENSSSCG00000011555	RPUSD3	100	77.557	ENSSBOG00000036106	RPUSD3	100	77.557	Saimiri_boliviensis_boliviensis
ENSSSCG00000011555	RPUSD3	88	58.252	ENSSHAG00000015536	RPUSD3	99	58.252	Sarcophilus_harrisii
ENSSSCG00000011555	RPUSD3	62	52.535	ENSTGUG00000008744	RPUSD3	93	52.535	Taeniopygia_guttata
ENSSSCG00000011555	RPUSD3	82	75.087	ENSTBEG00000000176	RPUSD3	100	75.087	Tupaia_belangeri
ENSSSCG00000011555	RPUSD3	100	81.818	ENSTTRG00000007544	RPUSD3	100	81.818	Tursiops_truncatus
ENSSSCG00000011555	RPUSD3	89	82.166	ENSUAMG00000011354	RPUSD3	98	82.166	Ursus_americanus
ENSSSCG00000011555	RPUSD3	100	80.398	ENSUMAG00000018830	RPUSD3	100	80.398	Ursus_maritimus
ENSSSCG00000011555	RPUSD3	98	80.523	ENSVVUG00000023735	RPUSD3	100	80.523	Vulpes_vulpes
ENSSSCG00000011555	RPUSD3	79	48.754	ENSXETG00000023546	rpusd3	99	48.754	Xenopus_tropicalis