EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000011827 (Gene tree)
Gene ID: 100155750
Gene Symbol: LSG1
Alias: FLJ11301
Full Name: large 60S subunit nuclear export GTPase 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 25388 bases
Position: chr13:131623827-131649214
Accession: 100155750
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000059075	MMR_HSR1	PF01926.23	1.9e-07	1	1
ENSSSCP00000012598	MMR_HSR1	PF01926.23	2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000036983	LSG1-202	1917	-	ENSSSCP00000059075	638 (aa)	-	A0A287BR18
ENSSSCT00000012939	LSG1-201	1938	XM_021070074	ENSSSCP00000012598	645 (aa)	XP_020925733	F1SFG2

Gene Model

Click here to download ENSSSCG00000011827's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000011827's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000011827	LSG1	99	82.979	ENSG00000041802	LSG1	98	92.529	Homo_sapiens
ENSSSCG00000011827	LSG1	100	63.706	ENSAPOG00000009694	lsg1	100	64.165	Acanthochromis_polyacanthus
ENSSSCG00000011827	LSG1	100	81.818	ENSAMEG00000009343	LSG1	100	81.818	Ailuropoda_melanoleuca
ENSSSCG00000011827	LSG1	98	64.082	ENSACIG00000012406	lsg1	100	63.566	Amphilophus_citrinellus
ENSSSCG00000011827	LSG1	100	63.400	ENSAOCG00000016066	lsg1	100	63.706	Amphiprion_ocellaris
ENSSSCG00000011827	LSG1	100	64.198	ENSAPEG00000003252	lsg1	100	64.198	Amphiprion_percula
ENSSSCG00000011827	LSG1	98	64.038	ENSATEG00000011794	lsg1	100	64.142	Anabas_testudineus
ENSSSCG00000011827	LSG1	95	62.957	ENSACAG00000004222	LSG1	99	62.162	Anolis_carolinensis
ENSSSCG00000011827	LSG1	99	84.043	ENSANAG00000021153	LSG1	99	84.650	Aotus_nancymaae
ENSSSCG00000011827	LSG1	100	62.766	ENSACLG00000000520	lsg1	100	61.898	Astatotilapia_calliptera
ENSSSCG00000011827	LSG1	100	62.406	ENSAMXG00000008271	lsg1	100	63.014	Astyanax_mexicanus
ENSSSCG00000011827	LSG1	99	88.479	ENSBTAG00000008461	LSG1	99	88.479	Bos_taurus
ENSSSCG00000011827	LSG1	73	45.276	WBGene00016907	C53H9.2	99	45.276	Caenorhabditis_elegans
ENSSSCG00000011827	LSG1	99	83.587	ENSCJAG00000013962	LSG1	99	84.195	Callithrix_jacchus
ENSSSCG00000011827	LSG1	95	82.907	ENSCAFG00000013445	LSG1	100	82.907	Canis_familiaris
ENSSSCG00000011827	LSG1	100	81.571	ENSCAFG00020002216	LSG1	100	81.571	Canis_lupus_dingo
ENSSSCG00000011827	LSG1	100	86.533	ENSCHIG00000015769	LSG1	100	87.616	Capra_hircus
ENSSSCG00000011827	LSG1	99	82.827	ENSTSYG00000001447	LSG1	99	83.587	Carlito_syrichta
ENSSSCG00000011827	LSG1	95	75.162	ENSCAPG00000009856	LSG1	99	75.367	Cavia_aperea
ENSSSCG00000011827	LSG1	99	83.739	ENSCCAG00000035744	LSG1	99	84.347	Cebus_capucinus
ENSSSCG00000011827	LSG1	99	83.587	ENSCATG00000042060	LSG1	99	82.979	Cercocebus_atys
ENSSSCG00000011827	LSG1	99	84.195	ENSCSAG00000008796	LSG1	92	84.954	Chlorocebus_sabaeus
ENSSSCG00000011827	LSG1	100	68.533	ENSCPBG00000015941	LSG1	83	68.533	Chrysemys_picta_bellii
ENSSSCG00000011827	LSG1	83	47.037	ENSCING00000007079	-	92	58.947	Ciona_intestinalis
ENSSSCG00000011827	LSG1	77	55.102	ENSCSAVG00000002514	-	96	55.102	Ciona_savignyi
ENSSSCG00000011827	LSG1	99	83.283	ENSCANG00000030709	LSG1	99	84.043	Colobus_angolensis_palliatus
ENSSSCG00000011827	LSG1	99	80.704	ENSCGRG00001019846	Lsg1	99	81.317	Cricetulus_griseus_chok1gshd
ENSSSCG00000011827	LSG1	99	80.704	ENSCGRG00000014617	Lsg1	99	81.317	Cricetulus_griseus_crigri
ENSSSCG00000011827	LSG1	98	63.183	ENSCSEG00000008522	lsg1	100	62.349	Cynoglossus_semilaevis
ENSSSCG00000011827	LSG1	98	64.308	ENSCVAG00000002484	lsg1	100	64.961	Cyprinodon_variegatus
ENSSSCG00000011827	LSG1	100	66.000	ENSDARG00000015352	lsg1	100	65.794	Danio_rerio
ENSSSCG00000011827	LSG1	99	82.219	ENSDNOG00000006224	LSG1	99	81.915	Dasypus_novemcinctus
ENSSSCG00000011827	LSG1	99	45.455	FBgn0266284	Ns3	99	45.455	Drosophila_melanogaster
ENSSSCG00000011827	LSG1	88	86.667	ENSETEG00000003888	LSG1	89	86.667	Echinops_telfairi
ENSSSCG00000011827	LSG1	88	55.236	ENSEBUG00000003119	lsg1	85	54.849	Eptatretus_burgeri
ENSSSCG00000011827	LSG1	99	84.347	ENSEASG00005000678	LSG1	99	84.954	Equus_asinus_asinus
ENSSSCG00000011827	LSG1	99	84.498	ENSECAG00000017659	LSG1	99	85.106	Equus_caballus
ENSSSCG00000011827	LSG1	87	84.615	ENSEEUG00000015217	LSG1	87	84.615	Erinaceus_europaeus
ENSSSCG00000011827	LSG1	100	61.196	ENSELUG00000023973	lsg1	100	61.043	Esox_lucius
ENSSSCG00000011827	LSG1	100	84.825	ENSFCAG00000024957	LSG1	100	84.825	Felis_catus
ENSSSCG00000011827	LSG1	92	64.390	ENSFALG00000007210	LSG1	94	64.715	Ficedula_albicollis
ENSSSCG00000011827	LSG1	99	77.484	ENSFDAG00000017373	LSG1	99	77.484	Fukomys_damarensis
ENSSSCG00000011827	LSG1	97	63.224	ENSFHEG00000003680	lsg1	99	63.636	Fundulus_heteroclitus
ENSSSCG00000011827	LSG1	83	73.191	ENSGMOG00000015834	lsg1	87	71.084	Gadus_morhua
ENSSSCG00000011827	LSG1	99	62.090	ENSGALG00000007058	LSG1	87	62.613	Gallus_gallus
ENSSSCG00000011827	LSG1	97	64.968	ENSGAFG00000015831	lsg1	99	64.596	Gambusia_affinis
ENSSSCG00000011827	LSG1	98	62.791	ENSGACG00000009323	lsg1	100	62.006	Gasterosteus_aculeatus
ENSSSCG00000011827	LSG1	99	83.283	ENSGGOG00000000520	LSG1	99	84.043	Gorilla_gorilla
ENSSSCG00000011827	LSG1	100	62.500	ENSHBUG00000005659	lsg1	100	62.348	Haplochromis_burtoni
ENSSSCG00000011827	LSG1	99	75.809	ENSHGLG00000017390	LSG1	99	75.809	Heterocephalus_glaber_female
ENSSSCG00000011827	LSG1	99	75.655	ENSHGLG00100018587	LSG1	99	75.655	Heterocephalus_glaber_male
ENSSSCG00000011827	LSG1	98	62.888	ENSHCOG00000016848	lsg1	100	63.553	Hippocampus_comes
ENSSSCG00000011827	LSG1	100	64.099	ENSIPUG00000008631	lsg1	100	63.790	Ictalurus_punctatus
ENSSSCG00000011827	LSG1	80	76.400	ENSSTOG00000010234	LSG1	99	78.400	Ictidomys_tridecemlineatus
ENSSSCG00000011827	LSG1	99	78.030	ENSJJAG00000015513	Lsg1	99	79.358	Jaculus_jaculus
ENSSSCG00000011827	LSG1	98	63.349	ENSKMAG00000009681	lsg1	100	62.423	Kryptolebias_marmoratus
ENSSSCG00000011827	LSG1	98	62.342	ENSLBEG00000024261	lsg1	100	62.481	Labrus_bergylta
ENSSSCG00000011827	LSG1	100	65.134	ENSLACG00000013399	LSG1	100	65.134	Latimeria_chalumnae
ENSSSCG00000011827	LSG1	98	64.752	ENSLOCG00000004918	lsg1	100	64.134	Lepisosteus_oculatus
ENSSSCG00000011827	LSG1	99	82.099	ENSLAFG00000012919	-	99	82.716	Loxodonta_africana
ENSSSCG00000011827	LSG1	99	84.043	ENSMFAG00000039903	LSG1	99	83.435	Macaca_fascicularis
ENSSSCG00000011827	LSG1	99	84.043	ENSMMUG00000010708	LSG1	99	84.802	Macaca_mulatta
ENSSSCG00000011827	LSG1	99	84.043	ENSMNEG00000031538	LSG1	99	83.283	Macaca_nemestrina
ENSSSCG00000011827	LSG1	99	83.891	ENSMLEG00000041184	LSG1	99	84.650	Mandrillus_leucophaeus
ENSSSCG00000011827	LSG1	100	62.058	ENSMAMG00000000470	lsg1	100	62.212	Mastacembelus_armatus
ENSSSCG00000011827	LSG1	100	62.500	ENSMZEG00005017865	lsg1	100	62.348	Maylandia_zebra
ENSSSCG00000011827	LSG1	88	63.851	ENSMGAG00000007050	LSG1	99	64.796	Meleagris_gallopavo
ENSSSCG00000011827	LSG1	91	78.912	ENSMAUG00000016976	Lsg1	93	80.235	Mesocricetus_auratus
ENSSSCG00000011827	LSG1	99	82.595	ENSMICG00000049087	LSG1	99	83.206	Microcebus_murinus
ENSSSCG00000011827	LSG1	99	80.734	ENSMOCG00000022136	Lsg1	99	80.887	Microtus_ochrogaster
ENSSSCG00000011827	LSG1	84	71.488	ENSMMOG00000008884	lsg1	100	69.307	Mola_mola
ENSSSCG00000011827	LSG1	99	58.055	ENSMODG00000019828	LSG1	99	58.359	Monodelphis_domestica
ENSSSCG00000011827	LSG1	100	80.186	MGP_CAROLIEiJ_G0020648	Lsg1	100	80.805	Mus_caroli
ENSSSCG00000011827	LSG1	100	80.805	ENSMUSG00000022538	Lsg1	100	81.115	Mus_musculus
ENSSSCG00000011827	LSG1	98	80.560	MGP_PahariEiJ_G0016352	Lsg1	100	81.413	Mus_pahari
ENSSSCG00000011827	LSG1	100	80.186	MGP_SPRETEiJ_G0021544	Lsg1	100	80.805	Mus_spretus
ENSSSCG00000011827	LSG1	100	83.156	ENSMPUG00000003734	LSG1	100	83.156	Mustela_putorius_furo
ENSSSCG00000011827	LSG1	100	84.862	ENSMLUG00000012548	LSG1	100	85.474	Myotis_lucifugus
ENSSSCG00000011827	LSG1	99	79.263	ENSNGAG00000021872	Lsg1	99	79.109	Nannospalax_galili
ENSSSCG00000011827	LSG1	99	83.587	ENSNLEG00000008293	LSG1	99	84.347	Nomascus_leucogenys
ENSSSCG00000011827	LSG1	69	72.165	ENSMEUG00000009041	-	84	72.165	Notamacropus_eugenii
ENSSSCG00000011827	LSG1	100	62.766	ENSONIG00000002635	lsg1	100	63.047	Oreochromis_niloticus
ENSSSCG00000011827	LSG1	95	72.231	ENSOANG00000012742	LSG1	99	72.231	Ornithorhynchus_anatinus
ENSSSCG00000011827	LSG1	99	82.219	ENSOCUG00000004817	LSG1	99	83.435	Oryctolagus_cuniculus
ENSSSCG00000011827	LSG1	98	64.455	ENSORLG00000007695	lsg1	100	63.932	Oryzias_latipes
ENSSSCG00000011827	LSG1	98	63.449	ENSORLG00020016286	lsg1	100	62.538	Oryzias_latipes_hni
ENSSSCG00000011827	LSG1	98	63.449	ENSORLG00015012025	lsg1	100	63.256	Oryzias_latipes_hsok
ENSSSCG00000011827	LSG1	98	63.823	ENSOMEG00000022379	lsg1	100	63.932	Oryzias_melastigma
ENSSSCG00000011827	LSG1	99	81.118	ENSOGAG00000003475	LSG1	99	81.873	Otolemur_garnettii
ENSSSCG00000011827	LSG1	100	87.596	ENSOARG00000020403	LSG1	100	87.596	Ovis_aries
ENSSSCG00000011827	LSG1	99	83.739	ENSPPAG00000029271	LSG1	99	83.587	Pan_paniscus
ENSSSCG00000011827	LSG1	100	84.384	ENSPPRG00000010281	LSG1	100	84.384	Panthera_pardus
ENSSSCG00000011827	LSG1	100	84.977	ENSPTIG00000010789	LSG1	100	84.977	Panthera_tigris_altaica
ENSSSCG00000011827	LSG1	99	83.587	ENSPTRG00000015760	LSG1	99	83.435	Pan_troglodytes
ENSSSCG00000011827	LSG1	99	83.739	ENSPANG00000018249	LSG1	99	83.131	Papio_anubis
ENSSSCG00000011827	LSG1	97	63.191	ENSPKIG00000002895	lsg1	99	62.997	Paramormyrops_kingsleyae
ENSSSCG00000011827	LSG1	96	63.994	ENSPSIG00000009821	LSG1	100	63.422	Pelodiscus_sinensis
ENSSSCG00000011827	LSG1	95	64.286	ENSPMGG00000000931	lsg1	100	63.961	Periophthalmus_magnuspinnatus
ENSSSCG00000011827	LSG1	99	80.305	ENSPEMG00000012082	-	99	79.847	Peromyscus_maniculatus_bairdii
ENSSSCG00000011827	LSG1	99	58.408	ENSPMAG00000007451	lsg1	99	57.895	Petromyzon_marinus
ENSSSCG00000011827	LSG1	100	65.285	ENSPCIG00000013890	LSG1	82	65.539	Phascolarctos_cinereus
ENSSSCG00000011827	LSG1	97	65.142	ENSPFOG00000021882	lsg1	99	65.077	Poecilia_formosa
ENSSSCG00000011827	LSG1	97	64.669	ENSPLAG00000019536	lsg1	99	64.769	Poecilia_latipinna
ENSSSCG00000011827	LSG1	97	64.308	ENSPMEG00000017281	lsg1	99	64.110	Poecilia_mexicana
ENSSSCG00000011827	LSG1	97	55.226	ENSPREG00000006048	lsg1	99	54.407	Poecilia_reticulata
ENSSSCG00000011827	LSG1	92	83.196	ENSPPYG00000014425	LSG1	100	83.196	Pongo_abelii
ENSSSCG00000011827	LSG1	89	85.333	ENSPCAG00000005511	LSG1	90	85.333	Procavia_capensis
ENSSSCG00000011827	LSG1	99	83.131	ENSPCOG00000012360	LSG1	99	83.739	Propithecus_coquereli
ENSSSCG00000011827	LSG1	100	62.614	ENSPNYG00000021994	lsg1	100	61.747	Pundamilia_nyererei
ENSSSCG00000011827	LSG1	100	64.787	ENSPNAG00000015533	lsg1	100	64.427	Pygocentrus_nattereri
ENSSSCG00000011827	LSG1	100	79.573	ENSRNOG00000001727	Lsg1	100	79.573	Rattus_norvegicus
ENSSSCG00000011827	LSG1	99	82.827	ENSRBIG00000029053	LSG1	99	83.587	Rhinopithecus_bieti
ENSSSCG00000011827	LSG1	99	82.827	ENSRROG00000037702	LSG1	99	83.587	Rhinopithecus_roxellana
ENSSSCG00000011827	LSG1	83	38.849	YGL099W	LSG1	65	52.096	Saccharomyces_cerevisiae
ENSSSCG00000011827	LSG1	99	83.739	ENSSBOG00000034938	LSG1	99	84.347	Saimiri_boliviensis_boliviensis
ENSSSCG00000011827	LSG1	78	66.157	ENSSHAG00000003487	LSG1	100	66.157	Sarcophilus_harrisii
ENSSSCG00000011827	LSG1	98	63.522	ENSSFOG00015008955	lsg1	100	63.093	Scleropages_formosus
ENSSSCG00000011827	LSG1	98	63.750	ENSSDUG00000004622	lsg1	100	64.165	Seriola_dumerili
ENSSSCG00000011827	LSG1	98	64.082	ENSSLDG00000010869	lsg1	100	64.341	Seriola_lalandi_dorsalis
ENSSSCG00000011827	LSG1	82	78.363	ENSSARG00000012981	LSG1	81	78.363	Sorex_araneus
ENSSSCG00000011827	LSG1	100	66.163	ENSSPUG00000016347	LSG1	100	74.194	Sphenodon_punctatus
ENSSSCG00000011827	LSG1	100	62.654	ENSSPAG00000005508	lsg1	100	63.735	Stegastes_partitus
ENSSSCG00000011827	LSG1	89	63.211	ENSTGUG00000009068	LSG1	100	63.211	Taeniopygia_guttata
ENSSSCG00000011827	LSG1	98	58.978	ENSTRUG00000017380	lsg1	100	58.931	Takifugu_rubripes
ENSSSCG00000011827	LSG1	98	62.871	ENSTNIG00000015570	lsg1	100	63.846	Tetraodon_nigroviridis
ENSSSCG00000011827	LSG1	100	81.930	ENSTTRG00000000559	LSG1	100	81.930	Tursiops_truncatus
ENSSSCG00000011827	LSG1	100	83.005	ENSUAMG00000012454	LSG1	100	83.005	Ursus_americanus
ENSSSCG00000011827	LSG1	100	83.005	ENSUMAG00000000855	LSG1	100	83.005	Ursus_maritimus
ENSSSCG00000011827	LSG1	95	83.040	ENSVPAG00000012400	LSG1	100	83.040	Vicugna_pacos
ENSSSCG00000011827	LSG1	95	82.428	ENSVVUG00000008956	LSG1	97	82.428	Vulpes_vulpes
ENSSSCG00000011827	LSG1	99	66.411	ENSXETG00000003451	lsg1	99	66.667	Xenopus_tropicalis
ENSSSCG00000011827	LSG1	97	64.082	ENSXCOG00000003239	lsg1	99	64.198	Xiphophorus_couchianus
ENSSSCG00000011827	LSG1	97	64.070	ENSXMAG00000005536	lsg1	99	63.876	Xiphophorus_maculatus