EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000011970 (Gene tree)
Gene ID: 100152199
Gene Symbol: CMSS1
Alias: C3orf26|MGC4308
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 391975 bases
Position: chr13:158800143-159192117
Accession: 100152199
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000012753	CMS1	PF14617.6	1.2e-32	1	1
ENSSSCP00000012753	DEAD	PF00270.29	4.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000013098	CMSS1-201	1180	XM_013981145	ENSSSCP00000012753	279 (aa)	XP_013836599	F1SKY0

Gene Model

Click here to download ENSSSCG00000011970's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000011970's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000011970	CMSS1	100	91.398	ENSG00000184220	CMSS1	99	93.827	Homo_sapiens
ENSSSCG00000011970	CMSS1	72	63.366	ENSAPOG00000010604	cmss1	81	63.000	Acanthochromis_polyacanthus
ENSSSCG00000011970	CMSS1	92	91.892	ENSAMEG00000004092	CMSS1	100	91.892	Ailuropoda_melanoleuca
ENSSSCG00000011970	CMSS1	72	53.960	ENSACIG00000021854	cmss1	91	52.066	Amphilophus_citrinellus
ENSSSCG00000011970	CMSS1	100	52.595	ENSAOCG00000013361	cmss1	100	52.941	Amphiprion_ocellaris
ENSSSCG00000011970	CMSS1	100	52.069	ENSAPEG00000005829	cmss1	100	52.921	Amphiprion_percula
ENSSSCG00000011970	CMSS1	100	53.287	ENSATEG00000008209	cmss1	100	53.425	Anabas_testudineus
ENSSSCG00000011970	CMSS1	82	68.261	ENSAPLG00000010542	CMSS1	100	68.261	Anas_platyrhynchos
ENSSSCG00000011970	CMSS1	95	61.905	ENSACAG00000011065	CMSS1	100	61.905	Anolis_carolinensis
ENSSSCG00000011970	CMSS1	100	91.071	ENSANAG00000023565	CMSS1	100	91.071	Aotus_nancymaae
ENSSSCG00000011970	CMSS1	100	49.338	ENSACLG00000027294	cmss1	100	51.546	Astatotilapia_calliptera
ENSSSCG00000011970	CMSS1	100	44.966	ENSAMXG00000002046	cmss1	100	46.780	Astyanax_mexicanus
ENSSSCG00000011970	CMSS1	100	92.473	ENSBTAG00000013663	CMSS1	100	92.473	Bos_taurus
ENSSSCG00000011970	CMSS1	100	91.071	ENSCJAG00000000610	CMSS1	100	91.071	Callithrix_jacchus
ENSSSCG00000011970	CMSS1	92	93.798	ENSCAFG00000009230	CMSS1	93	93.798	Canis_familiaris
ENSSSCG00000011970	CMSS1	95	91.321	ENSCAFG00020009464	-	97	91.321	Canis_lupus_dingo
ENSSSCG00000011970	CMSS1	87	82.041	ENSCAFG00020024156	-	76	82.041	Canis_lupus_dingo
ENSSSCG00000011970	CMSS1	92	91.440	ENSCHIG00000013003	CMSS1	93	91.440	Capra_hircus
ENSSSCG00000011970	CMSS1	96	87.823	ENSTSYG00000009266	CMSS1	99	90.698	Carlito_syrichta
ENSSSCG00000011970	CMSS1	80	73.799	ENSCAPG00000013584	CMSS1	100	74.236	Cavia_aperea
ENSSSCG00000011970	CMSS1	100	88.530	ENSCPOG00000014680	CMSS1	100	88.530	Cavia_porcellus
ENSSSCG00000011970	CMSS1	100	92.500	ENSCCAG00000034685	CMSS1	100	92.500	Cebus_capucinus
ENSSSCG00000011970	CMSS1	100	92.115	ENSCATG00000031980	CMSS1	100	92.115	Cercocebus_atys
ENSSSCG00000011970	CMSS1	82	94.323	ENSCLAG00000011241	CMSS1	98	94.323	Chinchilla_lanigera
ENSSSCG00000011970	CMSS1	88	93.061	ENSCSAG00000006024	CMSS1	100	93.061	Chlorocebus_sabaeus
ENSSSCG00000011970	CMSS1	100	72.043	ENSCHOG00000012098	CMSS1	100	72.043	Choloepus_hoffmanni
ENSSSCG00000011970	CMSS1	70	39.500	ENSCING00000014848	-	100	40.642	Ciona_intestinalis
ENSSSCG00000011970	CMSS1	100	91.756	ENSCANG00000031337	CMSS1	100	91.756	Colobus_angolensis_palliatus
ENSSSCG00000011970	CMSS1	100	83.154	ENSCGRG00001014305	Cmss1	100	83.154	Cricetulus_griseus_chok1gshd
ENSSSCG00000011970	CMSS1	92	83.594	ENSCGRG00000006722	Cmss1	99	83.594	Cricetulus_griseus_crigri
ENSSSCG00000011970	CMSS1	100	50.168	ENSCSEG00000004958	cmss1	100	50.658	Cynoglossus_semilaevis
ENSSSCG00000011970	CMSS1	100	51.379	ENSCVAG00000005039	cmss1	100	52.397	Cyprinodon_variegatus
ENSSSCG00000011970	CMSS1	100	45.333	ENSDARG00000112579	cmss1	100	46.575	Danio_rerio
ENSSSCG00000011970	CMSS1	97	84.502	ENSDNOG00000040418	CMSS1	96	84.502	Dasypus_novemcinctus
ENSSSCG00000011970	CMSS1	100	91.039	ENSDORG00000010461	Cmss1	100	91.039	Dipodomys_ordii
ENSSSCG00000011970	CMSS1	96	82.528	ENSEASG00005010966	CMSS1	99	93.151	Equus_asinus_asinus
ENSSSCG00000011970	CMSS1	94	88.889	ENSECAG00000015662	CMSS1	99	91.593	Equus_caballus
ENSSSCG00000011970	CMSS1	100	56.272	ENSEEUG00000007624	-	100	55.914	Erinaceus_europaeus
ENSSSCG00000011970	CMSS1	100	49.333	ENSELUG00000019459	cmss1	100	50.667	Esox_lucius
ENSSSCG00000011970	CMSS1	100	95.341	ENSFCAG00000044577	CMSS1	100	95.341	Felis_catus
ENSSSCG00000011970	CMSS1	86	64.017	ENSFALG00000005816	CMSS1	100	64.017	Ficedula_albicollis
ENSSSCG00000011970	CMSS1	82	91.667	ENSFDAG00000012577	CMSS1	100	91.667	Fukomys_damarensis
ENSSSCG00000011970	CMSS1	81	60.606	ENSFHEG00000012008	cmss1	95	60.606	Fundulus_heteroclitus
ENSSSCG00000011970	CMSS1	99	49.831	ENSGMOG00000016729	cmss1	100	52.113	Gadus_morhua
ENSSSCG00000011970	CMSS1	96	62.687	ENSGALG00000015267	CMSS1	99	62.687	Gallus_gallus
ENSSSCG00000011970	CMSS1	74	62.802	ENSGAFG00000021217	cmss1	76	62.500	Gambusia_affinis
ENSSSCG00000011970	CMSS1	99	48.387	ENSGACG00000002798	cmss1	100	48.746	Gasterosteus_aculeatus
ENSSSCG00000011970	CMSS1	100	63.799	ENSGAGG00000019861	CMSS1	100	63.799	Gopherus_agassizii
ENSSSCG00000011970	CMSS1	92	93.023	ENSGGOG00000014125	CMSS1	99	93.023	Gorilla_gorilla
ENSSSCG00000011970	CMSS1	100	49.502	ENSHBUG00000008431	cmss1	100	51.379	Haplochromis_burtoni
ENSSSCG00000011970	CMSS1	91	87.747	ENSHGLG00000019481	CMSS1	100	87.747	Heterocephalus_glaber_female
ENSSSCG00000011970	CMSS1	92	87.549	ENSHGLG00100010314	CMSS1	100	87.549	Heterocephalus_glaber_male
ENSSSCG00000011970	CMSS1	100	52.703	ENSHCOG00000003222	cmss1	100	54.237	Hippocampus_comes
ENSSSCG00000011970	CMSS1	100	47.119	ENSIPUG00000011591	cmss1	100	47.603	Ictalurus_punctatus
ENSSSCG00000011970	CMSS1	100	91.398	ENSSTOG00000019366	CMSS1	100	91.398	Ictidomys_tridecemlineatus
ENSSSCG00000011970	CMSS1	100	85.305	ENSJJAG00000014894	Cmss1	100	85.305	Jaculus_jaculus
ENSSSCG00000011970	CMSS1	72	53.960	ENSKMAG00000002390	cmss1	80	53.500	Kryptolebias_marmoratus
ENSSSCG00000011970	CMSS1	79	52.083	ENSLBEG00000006298	cmss1	82	57.214	Labrus_bergylta
ENSSSCG00000011970	CMSS1	82	63.478	ENSLACG00000009293	CMSS1	100	63.478	Latimeria_chalumnae
ENSSSCG00000011970	CMSS1	100	50.704	ENSLOCG00000009391	cmss1	100	51.761	Lepisosteus_oculatus
ENSSSCG00000011970	CMSS1	82	91.667	ENSLAFG00000017509	CMSS1	100	91.667	Loxodonta_africana
ENSSSCG00000011970	CMSS1	100	92.832	ENSMFAG00000045006	CMSS1	100	92.832	Macaca_fascicularis
ENSSSCG00000011970	CMSS1	100	92.473	ENSMMUG00000002939	CMSS1	100	92.473	Macaca_mulatta
ENSSSCG00000011970	CMSS1	100	92.473	ENSMNEG00000031315	CMSS1	100	92.473	Macaca_nemestrina
ENSSSCG00000011970	CMSS1	100	92.115	ENSMLEG00000033660	CMSS1	100	92.115	Mandrillus_leucophaeus
ENSSSCG00000011970	CMSS1	100	52.189	ENSMAMG00000017176	cmss1	100	53.103	Mastacembelus_armatus
ENSSSCG00000011970	CMSS1	100	49.338	ENSMZEG00005021886	cmss1	100	51.546	Maylandia_zebra
ENSSSCG00000011970	CMSS1	82	67.544	ENSMGAG00000014360	CMSS1	100	67.544	Meleagris_gallopavo
ENSSSCG00000011970	CMSS1	100	62.366	ENSMAUG00000020609	Cmss1	100	62.366	Mesocricetus_auratus
ENSSSCG00000011970	CMSS1	100	92.473	ENSMICG00000048977	CMSS1	100	92.473	Microcebus_murinus
ENSSSCG00000011970	CMSS1	100	83.871	ENSMOCG00000021937	Cmss1	100	83.871	Microtus_ochrogaster
ENSSSCG00000011970	CMSS1	72	60.891	ENSMMOG00000019794	cmss1	83	60.500	Mola_mola
ENSSSCG00000011970	CMSS1	94	73.664	ENSMODG00000002275	CMSS1	98	73.664	Monodelphis_domestica
ENSSSCG00000011970	CMSS1	100	52.740	ENSMALG00000004250	cmss1	100	51.890	Monopterus_albus
ENSSSCG00000011970	CMSS1	100	83.571	MGP_CAROLIEiJ_G0020824	Cmss1	100	83.571	Mus_caroli
ENSSSCG00000011970	CMSS1	100	84.643	ENSMUSG00000022748	Cmss1	100	84.643	Mus_musculus
ENSSSCG00000011970	CMSS1	100	83.214	MGP_PahariEiJ_G0016524	Cmss1	100	83.214	Mus_pahari
ENSSSCG00000011970	CMSS1	100	83.929	MGP_SPRETEiJ_G0021724	Cmss1	100	83.929	Mus_spretus
ENSSSCG00000011970	CMSS1	92	95.720	ENSMPUG00000011324	CMSS1	99	95.720	Mustela_putorius_furo
ENSSSCG00000011970	CMSS1	92	93.462	ENSMLUG00000001131	CMSS1	99	93.462	Myotis_lucifugus
ENSSSCG00000011970	CMSS1	100	87.814	ENSNGAG00000020316	Cmss1	100	87.814	Nannospalax_galili
ENSSSCG00000011970	CMSS1	100	49.007	ENSNBRG00000003095	cmss1	100	51.546	Neolamprologus_brichardi
ENSSSCG00000011970	CMSS1	100	93.907	ENSNLEG00000034172	CMSS1	100	93.907	Nomascus_leucogenys
ENSSSCG00000011970	CMSS1	82	66.228	ENSMEUG00000014505	CMSS1	100	66.228	Notamacropus_eugenii
ENSSSCG00000011970	CMSS1	100	92.832	ENSOPRG00000002986	CMSS1	100	92.832	Ochotona_princeps
ENSSSCG00000011970	CMSS1	100	71.326	ENSODEG00000009446	-	100	71.326	Octodon_degus
ENSSSCG00000011970	CMSS1	100	82.206	ENSODEG00000003558	-	100	82.206	Octodon_degus
ENSSSCG00000011970	CMSS1	100	87.455	ENSODEG00000005226	-	100	87.455	Octodon_degus
ENSSSCG00000011970	CMSS1	100	76.703	ENSODEG00000001853	-	100	76.703	Octodon_degus
ENSSSCG00000011970	CMSS1	72	60.891	ENSONIG00000006678	cmss1	77	60.500	Oreochromis_niloticus
ENSSSCG00000011970	CMSS1	92	71.923	ENSOANG00000007529	CMSS1	100	74.249	Ornithorhynchus_anatinus
ENSSSCG00000011970	CMSS1	92	93.411	ENSOCUG00000025366	CMSS1	93	93.411	Oryctolagus_cuniculus
ENSSSCG00000011970	CMSS1	100	54.737	ENSORLG00000020340	cmss1	100	55.088	Oryzias_latipes
ENSSSCG00000011970	CMSS1	76	55.924	ENSORLG00020012235	cmss1	85	56.000	Oryzias_latipes_hni
ENSSSCG00000011970	CMSS1	72	56.436	ENSORLG00015015551	cmss1	75	56.000	Oryzias_latipes_hsok
ENSSSCG00000011970	CMSS1	100	53.793	ENSOMEG00000012555	cmss1	100	53.979	Oryzias_melastigma
ENSSSCG00000011970	CMSS1	82	92.105	ENSOGAG00000002045	CMSS1	100	92.105	Otolemur_garnettii
ENSSSCG00000011970	CMSS1	96	88.148	ENSOARG00000017899	CMSS1	95	86.909	Ovis_aries
ENSSSCG00000011970	CMSS1	92	93.023	ENSPPAG00000038515	CMSS1	95	93.023	Pan_paniscus
ENSSSCG00000011970	CMSS1	100	94.982	ENSPPRG00000016767	CMSS1	100	94.982	Panthera_pardus
ENSSSCG00000011970	CMSS1	100	94.624	ENSPTIG00000018274	CMSS1	100	94.624	Panthera_tigris_altaica
ENSSSCG00000011970	CMSS1	100	91.756	ENSPTRG00000015157	CMSS1	100	92.653	Pan_troglodytes
ENSSSCG00000011970	CMSS1	92	89.535	ENSPANG00000019980	CMSS1	99	89.535	Papio_anubis
ENSSSCG00000011970	CMSS1	91	55.849	ENSPKIG00000012609	cmss1	97	56.371	Paramormyrops_kingsleyae
ENSSSCG00000011970	CMSS1	82	72.926	ENSPSIG00000003849	CMSS1	100	72.926	Pelodiscus_sinensis
ENSSSCG00000011970	CMSS1	72	61.084	ENSPMGG00000010286	cmss1	86	60.697	Periophthalmus_magnuspinnatus
ENSSSCG00000011970	CMSS1	100	84.643	ENSPEMG00000016384	Cmss1	100	84.643	Peromyscus_maniculatus_bairdii
ENSSSCG00000011970	CMSS1	73	52.451	ENSPMAG00000001146	cmss1	98	52.500	Petromyzon_marinus
ENSSSCG00000011970	CMSS1	89	76.923	ENSPCIG00000015656	CMSS1	97	74.231	Phascolarctos_cinereus
ENSSSCG00000011970	CMSS1	100	51.916	ENSPFOG00000016849	cmss1	100	53.819	Poecilia_formosa
ENSSSCG00000011970	CMSS1	100	51.568	ENSPLAG00000008323	cmss1	100	53.472	Poecilia_latipinna
ENSSSCG00000011970	CMSS1	100	49.833	ENSPMEG00000021020	cmss1	100	52.941	Poecilia_mexicana
ENSSSCG00000011970	CMSS1	84	58.091	ENSPREG00000007618	cmss1	68	61.500	Poecilia_reticulata
ENSSSCG00000011970	CMSS1	100	91.398	ENSPPYG00000013606	CMSS1	100	91.398	Pongo_abelii
ENSSSCG00000011970	CMSS1	100	93.190	ENSPCOG00000020035	CMSS1	100	93.190	Propithecus_coquereli
ENSSSCG00000011970	CMSS1	100	82.437	ENSPVAG00000017031	CMSS1	100	82.437	Pteropus_vampyrus
ENSSSCG00000011970	CMSS1	91	49.275	ENSPNYG00000013428	cmss1	97	51.698	Pundamilia_nyererei
ENSSSCG00000011970	CMSS1	100	48.822	ENSPNAG00000007912	cmss1	100	49.495	Pygocentrus_nattereri
ENSSSCG00000011970	CMSS1	92	83.398	ENSRNOG00000027888	Cmss1	99	83.398	Rattus_norvegicus
ENSSSCG00000011970	CMSS1	100	91.039	ENSRBIG00000037931	CMSS1	100	91.039	Rhinopithecus_bieti
ENSSSCG00000011970	CMSS1	100	91.039	ENSRROG00000042910	CMSS1	100	91.039	Rhinopithecus_roxellana
ENSSSCG00000011970	CMSS1	100	86.786	ENSSBOG00000030980	CMSS1	99	92.664	Saimiri_boliviensis_boliviensis
ENSSSCG00000011970	CMSS1	89	73.810	ENSSHAG00000009321	CMSS1	99	73.810	Sarcophilus_harrisii
ENSSSCG00000011970	CMSS1	100	52.174	ENSSFOG00015001509	cmss1	100	54.483	Scleropages_formosus
ENSSSCG00000011970	CMSS1	100	52.234	ENSSMAG00000001653	cmss1	100	51.890	Scophthalmus_maximus
ENSSSCG00000011970	CMSS1	100	52.921	ENSSDUG00000007719	cmss1	100	54.452	Seriola_dumerili
ENSSSCG00000011970	CMSS1	74	63.285	ENSSLDG00000012300	cmss1	88	53.302	Seriola_lalandi_dorsalis
ENSSSCG00000011970	CMSS1	100	76.071	ENSSARG00000003584	CMSS1	100	76.071	Sorex_araneus
ENSSSCG00000011970	CMSS1	81	69.027	ENSSPUG00000003865	CMSS1	100	69.027	Sphenodon_punctatus
ENSSSCG00000011970	CMSS1	93	54.307	ENSSPAG00000019182	cmss1	62	63.000	Stegastes_partitus
ENSSSCG00000011970	CMSS1	82	64.629	ENSTGUG00000013635	CMSS1	100	64.629	Taeniopygia_guttata
ENSSSCG00000011970	CMSS1	100	48.936	ENSTRUG00000015265	cmss1	100	48.936	Takifugu_rubripes
ENSSSCG00000011970	CMSS1	72	55.446	ENSTNIG00000002880	cmss1	72	55.000	Tetraodon_nigroviridis
ENSSSCG00000011970	CMSS1	100	62.143	ENSTBEG00000016722	CMSS1	100	62.143	Tupaia_belangeri
ENSSSCG00000011970	CMSS1	100	90.323	ENSTTRG00000001562	CMSS1	100	90.323	Tursiops_truncatus
ENSSSCG00000011970	CMSS1	97	89.744	ENSUAMG00000024209	CMSS1	100	95.067	Ursus_americanus
ENSSSCG00000011970	CMSS1	95	91.288	ENSUMAG00000001983	CMSS1	99	92.248	Ursus_maritimus
ENSSSCG00000011970	CMSS1	100	69.892	ENSVPAG00000000263	CMSS1	100	69.892	Vicugna_pacos
ENSSSCG00000011970	CMSS1	88	92.683	ENSVVUG00000021647	-	100	92.683	Vulpes_vulpes
ENSSSCG00000011970	CMSS1	81	90.708	ENSVVUG00000007776	-	89	90.708	Vulpes_vulpes
ENSSSCG00000011970	CMSS1	100	55.830	ENSXETG00000011858	cmss1	100	55.830	Xenopus_tropicalis
ENSSSCG00000011970	CMSS1	75	62.019	ENSXCOG00000018724	cmss1	68	62.000	Xiphophorus_couchianus
ENSSSCG00000011970	CMSS1	75	62.019	ENSXMAG00000011243	cmss1	75	62.000	Xiphophorus_maculatus